prot_Ecto-sp13_S_contig13266.2628.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13266.2628.1
Unique Nameprot_Ecto-sp13_S_contig13266.2628.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length749
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13266.2628.1 vs. uniprot
Match: A0A6H5L565_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L565_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 4.640e-94
Identity = 308/481 (64.03%), Postives = 313/481 (65.07%), Query Frame = 0 
Query:  273 RGPLLDMAARGGGRRGPLPQQQXXXXXXXXXXXXXXXGQQQPDMDRPAGNRMAPFPQGTADGWSRRSLSNNVGGGMNVGPPGALMGGPGGAGNMPPTGTGGGGHFSRXXXXXXXXXXXXXXXGPGFMPIAGGGPMNGPGGGGRGAGPLNRGRTGNNNNHRADKXXXXXXXXXXKKQLKHVDNDESLTPEQKDEAWAKLRTEIGVEKAAEAXXXXXXXXXXXXXXXXXXXXPLVPSGDGQAGGLPRTSGAEVPSQPPAGDDGGAVASDSDGKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPARGDNGNLGSDRPPPLDDQSAIPVPAGGGSSGEPRDGPAQHXXXXXXXXXXXXXXXXXXXXXXYGXXXXXXXXXAPLSDGWQRQQGEKXXXXXXXMMAGDHPRLEGRPGQYQQQGDNPGFLPXXXXXXXXXXXXXRGG----YRQRICRYFLQGHCTQGNKCTWLHAVDR 749
            RGPL DMAARG        QQQ               GQQQP MDRPAGNRMAPFPQ            +NVGGGMNVGPPGALMGGPGG GNMPPTG      F  XXXXXXXX       GPGFMPIAGGGPMNGP    RGAGPLNRGRTGNNN H+ADK          KKQLKHV NDESLTPEQKDEAWAKLRTEIGVEKAA AXXXXXXXXXXXXXXXXXXXXPLVPSGDGQAGGLPRTSGAEVPSQPPAGDD GAV+SDS GK                                      PPAR DNGNL SDR P LDDQSA+P  AGGGSSGEPRDGPAQHXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXX              XXXXXXX                           XXXXXXXXXXXXX       YRQR C+YFLQG CTQGNKCTWLHAVDR
Sbjct:  694 RGPLPDMAARGXXXXXXXXQQQQQARGAGRGGGMGSGGQQQPGMDRPAGNRMAPFPQ------------DNVGGGMNVGPPGALMGGPGGGGNMPPTGAXXXXXFXXXXXXXXXXALGGGDAGPGFMPIAGGGPMNGPXXXXRGAGPLNRGRTGNNN-HKADKAAEQRKRKNRKKQLKHVSNDESLTPEQKDEAWAKLRTEIGVEKAA-AXXXXXXXXXXXXXXXXXXXXPLVPSGDGQAGGLPRTSGAEVPSQPPAGDDDGAVSSDSGGKHGNGAGGDDNAPTGAAPARTAPASAKDGQDDRAAAHETPPAREDNGNLSSDRHPSLDDQSAVPAHAGGGSSGEPRDGPAQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRQRTCKYFLQGKCTQGNKCTWLHAVDR 1160
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BLAST of mRNA_Ecto-sp13_S_contig13266.2628.1 vs. uniprot
Match: D8LMD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD6_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 8.820e-48
Identity = 155/193 (80.31%), Postives = 156/193 (80.83%), Query Frame = 0 
Query:  355 ALMGGPGGAGNMPPTGTGGGGHFSRXXXXXXXXXXXXXXXGPGFMPIAGGGPMNGPGGGGRGAGPLNRGRTGNNNNHRADKXXXXXXXXXXK--KQLKHVDNDESLTPEQKDEAWAKLRTEIGVEKAAEAXXXXXXXXXXXXXXXXXXXX--PLVPSGDGQAGGLPRTSGAEVPSQPPAGDDGGAVASDSDGK 543
            A MGG    GNMPP G GG GHFSR  XXXXXX       GPGFMPIAGGGPMNGPGGGGRGAGP+NRGRTGNN       XXXXXXXXXX   KQLKHV NDESLTPEQKDEA AKLR EIGVEKAAEAXXXXXXXXXXXXXXXXXX    PLVPSGDGQAGGLPRTSGAEVPSQPPAGDDGGAVA D  GK
Sbjct:  340 ARMGGAXAGGNMPPAGAGGSGHFSRGRXXXXXXTLGGGDAGPGFMPIAGGGPMNGPGGGGRGAGPMNRGRTGNNXXXXXXXXXXXXXXXXXXXXKQLKHVGNDESLTPEQKDEARAKLRMEIGVEKAAEAXXXXXXXXXXXXXXXXXXQQQQPLVPSGDGQAGGLPRTSGAEVPSQPPAGDDGGAVAPDPGGK 532
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13266.2628.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L565_9PHAE4.640e-9464.03C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LMD6_ECTSI8.820e-4880.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 721..747
e-value: 0.002
score: 27.4
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 721..748
score: 14.014
NoneNo IPR availableGENE3D4.10.1000.10coord: 717..749
e-value: 1.6E-5
score: 26.8
IPR041367E3 ligase, CCCH-type zinc fingerPFAMPF18044zf-CCCH_4coord: 725..745
e-value: 1.2E-5
score: 25.0
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 722..746

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13266contigEcto-sp13_S_contig13266:197..3203 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13266.2628.1mRNA_Ecto-sp13_S_contig13266.2628.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13266 197..3203 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13266.2628.1 ID=prot_Ecto-sp13_S_contig13266.2628.1|Name=mRNA_Ecto-sp13_S_contig13266.2628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=749bp
MRRDGPSPRGGVGVGVGVGGGGGGGGRGTGSHSHSRSPMRDGLAGEDGAA
AGRGPPPGGQRQQQQQPSRPLPPPHGMAPGAAAGAGGGAPTGRSGPGGNR
GGGGGPGMSPSSPMHQQQGRGGPPGGGGGGMAGGRGPGPNNMGRGADSGG
RGGRGQLTDPSGHGHLGGPSLARGGEGRGIRHEPPGRGGMVSAGRPAGGG
GLRGPPAPPAGGQGELMSREGGTGGRGGGGAPPPMHGRGGAGAQQQQQQR
QLPMMNQQPSGAKVNQRGGGGGRGPLLDMAARGGGRRGPLPQQQQQARGA
GRGGGMGSGGQQQPDMDRPAGNRMAPFPQGTADGWSRRSLSNNVGGGMNV
GPPGALMGGPGGAGNMPPTGTGGGGHFSRGTGGGGGGTLGGGDSGPGFMP
IAGGGPMNGPGGGGRGAGPLNRGRTGNNNNHRADKAAEQKKRKNRKKQLK
HVDNDESLTPEQKDEAWAKLRTEIGVEKAAEAAAATAAAAGTEGTEQQQQ
QQPLVPSGDGQAGGLPRTSGAEVPSQPPAGDDGGAVASDSDGKDGNGAGG
DDNAPTGAAPATTASASAKGGQDDRAAARETPPARGDNGNLGSDRPPPLD
DQSAIPVPAGGGSSGEPRDGPAQHGGGSSSPPRHRDGGPGGNSGLPYGGG
GGGDGGGAPLSDGWQRQQGEKGGPGGGGMMAGDHPRLEGRPGQYQQQGDN
PGFLPPPPPPFSGGGGGGRGGYRQRICRYFLQGHCTQGNKCTWLHAVDR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR041367Znf-CCCH_4
IPR036855Znf_CCCH_sf