mRNA_Ecto-sp13_S_contig13266.2628.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13266.2628.1
Unique NamemRNA_Ecto-sp13_S_contig13266.2628.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13266.2628.1 vs. uniprot
Match: A0A6H5L565_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L565_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 4.640e-94
Identity = 308/481 (64.03%), Postives = 313/481 (65.07%), Query Frame = 1 
Query:  817 RGPLLDMAARGGGRRGPLPQQQXXXXXXXXXXXXXXXGQQQPDMDRPAGNRMAPFPQGTADGWSRRSLSNNVGGGMNVGPPGALMGGPGGAGNMPPTGTGGGGHFSRXXXXXXXXXXXXXXXGPGFMPIAGGGPMNGPGGGGRGAGPLNRGRTGNNNNHRADKXXXXXXXXXXKKQLKHVDNDESLTPEQKDEAWAKLRTEIGVEKAAEAXXXXXXXXXXXXXXXXXXXXPLVPSGDGQAGGLPRTSGAEVPSQPPAGDDGGAVASDSDGKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPARGDNGNLGSDRPPPLDDQSAIPVPAGGGSSGEPRDGPAQHXXXXXXXXXXXXXXXXXXXXXXYGXXXXXXXXXAPLSDGWQRQQGEKXXXXXXXMMAGDHPRLEGRPGQYQQQGDNPGFLPXXXXXXXXXXXXXRGG----YRQRICRYFLQGHCTQGNKCTWLHAVDR 2247
            RGPL DMAARG        QQQ               GQQQP MDRPAGNRMAPFPQ            +NVGGGMNVGPPGALMGGPGG GNMPPTG      F  XXXXXXXX       GPGFMPIAGGGPMNGP    RGAGPLNRGRTGNNN H+ADK          KKQLKHV NDESLTPEQKDEAWAKLRTEIGVEKAA AXXXXXXXXXXXXXXXXXXXXPLVPSGDGQAGGLPRTSGAEVPSQPPAGDD GAV+SDS GK                                      PPAR DNGNL SDR P LDDQSA+P  AGGGSSGEPRDGPAQHXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXX              XXXXXXX                           XXXXXXXXXXXXX       YRQR C+YFLQG CTQGNKCTWLHAVDR
Sbjct:  694 RGPLPDMAARGXXXXXXXXQQQQQARGAGRGGGMGSGGQQQPGMDRPAGNRMAPFPQ------------DNVGGGMNVGPPGALMGGPGGGGNMPPTGAXXXXXFXXXXXXXXXXALGGGDAGPGFMPIAGGGPMNGPXXXXRGAGPLNRGRTGNNN-HKADKAAEQRKRKNRKKQLKHVSNDESLTPEQKDEAWAKLRTEIGVEKAA-AXXXXXXXXXXXXXXXXXXXXPLVPSGDGQAGGLPRTSGAEVPSQPPAGDDDGAVSSDSGGKHGNGAGGDDNAPTGAAPARTAPASAKDGQDDRAAAHETPPAREDNGNLSSDRHPSLDDQSAVPAHAGGGSSGEPRDGPAQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRQRTCKYFLQGKCTQGNKCTWLHAVDR 1160
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BLAST of mRNA_Ecto-sp13_S_contig13266.2628.1 vs. uniprot
Match: D8LMD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD6_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 8.820e-48
Identity = 155/193 (80.31%), Postives = 156/193 (80.83%), Query Frame = 1 
Query: 1063 ALMGGPGGAGNMPPTGTGGGGHFSRXXXXXXXXXXXXXXXGPGFMPIAGGGPMNGPGGGGRGAGPLNRGRTGNNNNHRADKXXXXXXXXXXK--KQLKHVDNDESLTPEQKDEAWAKLRTEIGVEKAAEAXXXXXXXXXXXXXXXXXXXX--PLVPSGDGQAGGLPRTSGAEVPSQPPAGDDGGAVASDSDGK 1629
            A MGG    GNMPP G GG GHFSR  XXXXXX       GPGFMPIAGGGPMNGPGGGGRGAGP+NRGRTGNN       XXXXXXXXXX   KQLKHV NDESLTPEQKDEA AKLR EIGVEKAAEAXXXXXXXXXXXXXXXXXX    PLVPSGDGQAGGLPRTSGAEVPSQPPAGDDGGAVA D  GK
Sbjct:  340 ARMGGAXAGGNMPPAGAGGSGHFSRGRXXXXXXTLGGGDAGPGFMPIAGGGPMNGPGGGGRGAGPMNRGRTGNNXXXXXXXXXXXXXXXXXXXXKQLKHVGNDESLTPEQKDEARAKLRMEIGVEKAAEAXXXXXXXXXXXXXXXXXXQQQQPLVPSGDGQAGGLPRTSGAEVPSQPPAGDDGGAVAPDPGGK 532
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13266.2628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L565_9PHAE4.640e-9464.03C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LMD6_ECTSI8.820e-4880.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13266contigEcto-sp13_S_contig13266:197..3203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2248
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_002380.1
Cds size2247
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462709.488694-CDS-Ecto-sp13_S_contig13266:196..12201681462709.488694-CDS-Ecto-sp13_S_contig13266:196..1220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13266 197..1220 +
1681462709.5018148-CDS-Ecto-sp13_S_contig13266:1771..23771681462709.5018148-CDS-Ecto-sp13_S_contig13266:1771..2377Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13266 1772..2377 +
1681462709.510648-CDS-Ecto-sp13_S_contig13266:2586..32031681462709.510648-CDS-Ecto-sp13_S_contig13266:2586..3203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13266 2587..3203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13266.2628.1prot_Ecto-sp13_S_contig13266.2628.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13266 197..3203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13266.2628.1

>prot_Ecto-sp13_S_contig13266.2628.1 ID=prot_Ecto-sp13_S_contig13266.2628.1|Name=mRNA_Ecto-sp13_S_contig13266.2628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=749bp
MRRDGPSPRGGVGVGVGVGGGGGGGGRGTGSHSHSRSPMRDGLAGEDGAA
AGRGPPPGGQRQQQQQPSRPLPPPHGMAPGAAAGAGGGAPTGRSGPGGNR
GGGGGPGMSPSSPMHQQQGRGGPPGGGGGGMAGGRGPGPNNMGRGADSGG
RGGRGQLTDPSGHGHLGGPSLARGGEGRGIRHEPPGRGGMVSAGRPAGGG
GLRGPPAPPAGGQGELMSREGGTGGRGGGGAPPPMHGRGGAGAQQQQQQR
QLPMMNQQPSGAKVNQRGGGGGRGPLLDMAARGGGRRGPLPQQQQQARGA
GRGGGMGSGGQQQPDMDRPAGNRMAPFPQGTADGWSRRSLSNNVGGGMNV
GPPGALMGGPGGAGNMPPTGTGGGGHFSRGTGGGGGGTLGGGDSGPGFMP
IAGGGPMNGPGGGGRGAGPLNRGRTGNNNNHRADKAAEQKKRKNRKKQLK
HVDNDESLTPEQKDEAWAKLRTEIGVEKAAEAAAATAAAAGTEGTEQQQQ
QQPLVPSGDGQAGGLPRTSGAEVPSQPPAGDDGGAVASDSDGKDGNGAGG
DDNAPTGAAPATTASASAKGGQDDRAAARETPPARGDNGNLGSDRPPPLD
DQSAIPVPAGGGSSGEPRDGPAQHGGGSSSPPRHRDGGPGGNSGLPYGGG
GGGDGGGAPLSDGWQRQQGEKGGPGGGGMMAGDHPRLEGRPGQYQQQGDN
PGFLPPPPPPFSGGGGGGRGGYRQRICRYFLQGHCTQGNKCTWLHAVDR
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mRNA from alignment at Ecto-sp13_S_contig13266:197..3203+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13266.2628.1 ID=mRNA_Ecto-sp13_S_contig13266.2628.1|Name=mRNA_Ecto-sp13_S_contig13266.2628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3007bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13266:197..3203+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGAGGGATGGGCCGTCCCCGCGCGGCGGCGTAGGCGTAGGCGTAGG
CGTAGGCGGCGGCGGCGGCGGCGGCGGCCGTGGGACGGGTTCGCACTCTC
ATTCGCGGTCCCCCATGCGGGACGGTCTCGCGGGCGAAGACGGGGCCGCC
GCAGGCAGAGGCCCTCCTCCTGGAGGACAACGCCAGCAGCAGCAACAGCC
GTCGCGACCGCTGCCGCCGCCTCATGGCATGGCGCCGGGGGCGGCGGCGG
GAGCGGGGGGAGGAGCACCGACCGGGAGAAGCGGTCCGGGGGGAAACCGC
GGCGGAGGTGGCGGACCCGGGATGAGCCCGAGCTCTCCCATGCATCAGCA
GCAGGGGAGGGGCGGTCCGCCGGGCGGTGGCGGCGGCGGCATGGCCGGCG
GACGTGGCCCCGGGCCGAACAACATGGGCCGCGGTGCCGACAGCGGCGGC
AGGGGAGGCAGAGGGCAGTTGACCGATCCGAGTGGCCACGGCCATCTAGG
CGGGCCGTCACTTGCCAGAGGCGGAGAAGGTAGGGGCATAAGGCACGAGC
CGCCGGGACGAGGAGGGATGGTTTCGGCCGGCCGCCCGGCGGGTGGGGGG
GGGCTCCGTGGACCGCCGGCGCCCCCGGCGGGGGGGCAGGGCGAGCTTAT
GTCGCGCGAAGGCGGCACCGGTGGCCGAGGCGGTGGCGGTGCTCCTCCTC
CGATGCATGGCCGGGGAGGAGCAGGAGCGCAGCAGCAGCAGCAGCAACGG
CAACTGCCGATGATGAACCAACAGCCTTCGGGGGCAAAGGTGAACCAGCG
AGGCGGAGGGGGAGGCCGCGGCCCGCTCCTCGACATGGCGGCTAGGGGCG
GCGGCCGCCGTGGCCCACTACCCCAGCAGCAGCAGCAGGCGCGGGGTGCT
GGGCGAGGAGGAGGAATGGGCAGCGGCGGGCAACAGCAGCCTGACATGGA
TCGCCCTGCTGGAAATCGCATGGCGCCGTTCCCCCAGGGTACGGCAGATG
GCTGGTCGCGACGCTCTTTGTCCAGTTGCTGACTGGTGGTTGTTTGACGG
TCATGTTTCTTGCGCTCTCTCTCTCTTTGATAATGTCGTGGTCGTCCCAG
GTCGTTGATTCCTTCCGGTTCTTCTTGTGTATTGACCGCTTAGTTGCGTG
CAGGGCACAGCAGTACACTCACCAAAAAGACTCCCAACACATCCTGTTGG
ACTGTGGGTATATCTCAAACGGTAGTCTTTCTGTGTTTGTACTTTTTTTC
CCTATTTAGTACGTAGTCCCTACCCGATTAGTTTTTTGCTATCAGTGTGC
TGTCTTCCCGTTCCCGCATGGGAAAGAGGCACTCCGTCGTACCTACGGCA
GTTGAGGTCGAGAGTTGATTTGAGTGAGTATCCTCTGGTGTTTGGAACGG
TCGGCTGCACCCCTTCTTAGCTTCCTCCAGTGTATCTCCATTTCGTTTTT
TTCTCGGGACTTCCCCCGCCGCTTCCTTTCACCTTTGTTGGCGGACGTGC
TCCACATCCCATCTACAAACACATGAGTCTTGATCGAGGTTCCATTGACG
TCGCCAACGCCTTGATTTTCCTCAGATAACGTGGGCGGCGGCATGAACGT
CGGCCCCCCAGGAGCTCTTATGGGGGGCCCCGGCGGCGCTGGAAACATGC
CTCCGACGGGGACGGGCGGGGGCGGTCACTTTTCGCGCGGCACGGGTGGC
GGAGGGGGGGGAACGCTGGGCGGGGGCGATTCCGGACCTGGTTTCATGCC
GATTGCCGGCGGTGGTCCGATGAACGGGCCGGGCGGCGGCGGGCGTGGGG
CCGGTCCGCTGAACAGGGGGCGCACTGGCAACAACAACAACCACAGGGCG
GACAAGGCGGCGGAGCAGAAGAAGAGGAAGAACAGGAAGAAGCAGCTCAA
GCACGTCGACAACGACGAGAGCCTGACGCCCGAGCAGAAGGATGAGGCCT
GGGCCAAGCTGAGGACGGAGATCGGGGTCGAGAAGGCGGCGGAGGCGGCG
GCGGCGACGGCGGCGGCCGCGGGGACGGAAGGAACGGAGCAGCAGCAGCA
GCAGCAGCCGTTGGTACCTTCCGGCGATGGGCAAGCTGGAGGGCTGCCCC
GGACGAGCGGGGCGGAGGTGCCTTCCCAGCCACCCGCGGGAGACGATGGT
GGTGCCGTCGCGTCGGACTCCGATGGCAAAGGTGAGCAGGCCGCACACCT
TGTATCTCTCTGGTTTCCCTTCCGCCTTTCCAAGACGTCCGCACGTGCCG
AATCATCTCATGCTTGCCTCTCCTGTTCGTACGTGGCTCCTCCACAATGC
GTCTCACTGTCCCCTCCCACCCACCATTGACATTTCCGTGCCCCCCTCCC
CGGACGGCTTGCCTCGATGTACCGCCCTTTCGTGCGACAGATGGAAACGG
CGCCGGCGGCGACGACAACGCCCCGACTGGCGCTGCCCCCGCCACGACGG
CGTCGGCTTCAGCCAAGGGCGGGCAGGACGATCGGGCGGCGGCACGCGAA
ACCCCGCCCGCCCGAGGAGACAACGGCAACCTCGGGTCAGACAGACCCCC
CCCGCTCGACGACCAGTCCGCGATCCCCGTCCCCGCGGGGGGGGGCAGCA
GCGGAGAGCCTCGCGACGGCCCCGCTCAACACGGCGGCGGCAGCAGCAGC
CCTCCCCGACACCGGGACGGAGGTCCTGGCGGGAACAGCGGGCTGCCGTA
CGGCGGCGGCGGCGGCGGCGACGGCGGGGGGGCGCCATTATCGGATGGAT
GGCAGCGACAGCAAGGCGAGAAAGGAGGTCCTGGCGGCGGCGGCATGATG
GCGGGAGACCACCCCCGGCTCGAAGGCCGCCCCGGCCAGTACCAGCAGCA
GGGTGACAACCCTGGGTTTTTGCCGCCCCCTCCGCCTCCGTTTTCGGGAG
GCGGTGGCGGCGGTCGCGGGGGATATCGCCAGAGAATCTGCAGGTACTTC
CTGCAGGGGCATTGCACCCAAGGCAACAAATGCACGTGGCTCCACGCGGT
CGACCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13266:197..3203+

>mRNA_Ecto-sp13_S_contig13266.2628.1 ID=mRNA_Ecto-sp13_S_contig13266.2628.1|Name=mRNA_Ecto-sp13_S_contig13266.2628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2247bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13266:197..3203+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGAGGGATGGGCCGTCCCCGCGCGGCGGCGTAGGCGTAGGCGTAGG
CGTAGGCGGCGGCGGCGGCGGCGGCGGCCGTGGGACGGGTTCGCACTCTC
ATTCGCGGTCCCCCATGCGGGACGGTCTCGCGGGCGAAGACGGGGCCGCC
GCAGGCAGAGGCCCTCCTCCTGGAGGACAACGCCAGCAGCAGCAACAGCC
GTCGCGACCGCTGCCGCCGCCTCATGGCATGGCGCCGGGGGCGGCGGCGG
GAGCGGGGGGAGGAGCACCGACCGGGAGAAGCGGTCCGGGGGGAAACCGC
GGCGGAGGTGGCGGACCCGGGATGAGCCCGAGCTCTCCCATGCATCAGCA
GCAGGGGAGGGGCGGTCCGCCGGGCGGTGGCGGCGGCGGCATGGCCGGCG
GACGTGGCCCCGGGCCGAACAACATGGGCCGCGGTGCCGACAGCGGCGGC
AGGGGAGGCAGAGGGCAGTTGACCGATCCGAGTGGCCACGGCCATCTAGG
CGGGCCGTCACTTGCCAGAGGCGGAGAAGGTAGGGGCATAAGGCACGAGC
CGCCGGGACGAGGAGGGATGGTTTCGGCCGGCCGCCCGGCGGGTGGGGGG
GGGCTCCGTGGACCGCCGGCGCCCCCGGCGGGGGGGCAGGGCGAGCTTAT
GTCGCGCGAAGGCGGCACCGGTGGCCGAGGCGGTGGCGGTGCTCCTCCTC
CGATGCATGGCCGGGGAGGAGCAGGAGCGCAGCAGCAGCAGCAGCAACGG
CAACTGCCGATGATGAACCAACAGCCTTCGGGGGCAAAGGTGAACCAGCG
AGGCGGAGGGGGAGGCCGCGGCCCGCTCCTCGACATGGCGGCTAGGGGCG
GCGGCCGCCGTGGCCCACTACCCCAGCAGCAGCAGCAGGCGCGGGGTGCT
GGGCGAGGAGGAGGAATGGGCAGCGGCGGGCAACAGCAGCCTGACATGGA
TCGCCCTGCTGGAAATCGCATGGCGCCGTTCCCCCAGGGTACGGCAGATG
GCTGGTCGCGACGCTCTTTGTCCAATAACGTGGGCGGCGGCATGAACGTC
GGCCCCCCAGGAGCTCTTATGGGGGGCCCCGGCGGCGCTGGAAACATGCC
TCCGACGGGGACGGGCGGGGGCGGTCACTTTTCGCGCGGCACGGGTGGCG
GAGGGGGGGGAACGCTGGGCGGGGGCGATTCCGGACCTGGTTTCATGCCG
ATTGCCGGCGGTGGTCCGATGAACGGGCCGGGCGGCGGCGGGCGTGGGGC
CGGTCCGCTGAACAGGGGGCGCACTGGCAACAACAACAACCACAGGGCGG
ACAAGGCGGCGGAGCAGAAGAAGAGGAAGAACAGGAAGAAGCAGCTCAAG
CACGTCGACAACGACGAGAGCCTGACGCCCGAGCAGAAGGATGAGGCCTG
GGCCAAGCTGAGGACGGAGATCGGGGTCGAGAAGGCGGCGGAGGCGGCGG
CGGCGACGGCGGCGGCCGCGGGGACGGAAGGAACGGAGCAGCAGCAGCAG
CAGCAGCCGTTGGTACCTTCCGGCGATGGGCAAGCTGGAGGGCTGCCCCG
GACGAGCGGGGCGGAGGTGCCTTCCCAGCCACCCGCGGGAGACGATGGTG
GTGCCGTCGCGTCGGACTCCGATGGCAAAGATGGAAACGGCGCCGGCGGC
GACGACAACGCCCCGACTGGCGCTGCCCCCGCCACGACGGCGTCGGCTTC
AGCCAAGGGCGGGCAGGACGATCGGGCGGCGGCACGCGAAACCCCGCCCG
CCCGAGGAGACAACGGCAACCTCGGGTCAGACAGACCCCCCCCGCTCGAC
GACCAGTCCGCGATCCCCGTCCCCGCGGGGGGGGGCAGCAGCGGAGAGCC
TCGCGACGGCCCCGCTCAACACGGCGGCGGCAGCAGCAGCCCTCCCCGAC
ACCGGGACGGAGGTCCTGGCGGGAACAGCGGGCTGCCGTACGGCGGCGGC
GGCGGCGGCGACGGCGGGGGGGCGCCATTATCGGATGGATGGCAGCGACA
GCAAGGCGAGAAAGGAGGTCCTGGCGGCGGCGGCATGATGGCGGGAGACC
ACCCCCGGCTCGAAGGCCGCCCCGGCCAGTACCAGCAGCAGGGTGACAAC
CCTGGGTTTTTGCCGCCCCCTCCGCCTCCGTTTTCGGGAGGCGGTGGCGG
CGGTCGCGGGGGATATCGCCAGAGAATCTGCAGGTACTTCCTGCAGGGGC
ATTGCACCCAAGGCAACAAATGCACGTGGCTCCACGCGGTCGACCGG
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