prot_Ecto-sp13_S_contig13206.2597.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13206.2597.1
Unique Nameprot_Ecto-sp13_S_contig13206.2597.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length380
Homology
BLAST of mRNA_Ecto-sp13_S_contig13206.2597.1 vs. uniprot
Match: A0A6H5JRS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS7_9PHAE)

HSP 1 Score: 422 bits (1084), Expect = 1.540e-143
Identity = 297/362 (82.04%), Postives = 301/362 (83.15%), Query Frame = 0
Query:   30 SPTAILAESVARRVRAGPVRGPRRLASADGRNSNNTGNSTSSEEYVCPGETAYIANGACDDMNNNVYCGYDGGDCCSXXXXXXXXXXXXXXSPPSYFNCVDPAAACVGEENEDGGSDVADDAQQRYSSSGRAASASDESSASRLSDCVEQWIGDGACDDMNNSAECSYDGGDCCSEDGDYSECLDPAALAASPSPYSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------SSDETVGNSKPTLAKAFFGIGAACVVASGVAFLAVSYFRLAERRKQEVAAVRRGSGQDHVRGDGGDGRASGSTPAVASDGF 380
            SPTAILAESVA RVRAGPVRGPR+LASA+GR S  TGNS SSEEYVCPGETAYIANGACDDMNNNVYCGYDGGDCCS   XXXXXXXXXX SPPSYFNCVDPAAACVGEENEDGGSDVADDAQQRYSSSGRAASASDESSASRLSDCVEQWIGDGACDDMNNSAECSYDGGDCCSEDGDYSECLDP ALAA+ SPYSE   XXXXXXXXXXXXXXXXXXXXXXX   X  X                  XXX     XXXXXXXXXXXXX           SS ETV NSKPTLAKAFFGIGAACVV SGVAFL VSYFRLAERRKQEVAAVRRGS QDH +GDGGDGRASGS PAVAS GF
Sbjct:   32 SPTAILAESVAPRVRAGPVRGPRQLASANGRYST-TGNSASSEEYVCPGETAYIANGACDDMNNNVYCGYDGGDCCSCTAXXXXXXXXXXASPPSYFNCVDPAAACVGEENEDGGSDVADDAQQRYSSSGRAASASDESSASRLSDCVEQWIGDGACDDMNNSAECSYDGGDCCSEDGDYSECLDPDALAATSSPYSEEEEXXXXXXXXXXXXXXXXXXXXXXXEHEXHEXQESVFFSSDSNTAPPSPSXXXSNATEXXXXXXXXXXXXXXXXXXXXXXXASSRETVDNSKPTLAKAFFGIGAACVVVSGVAFLTVSYFRLAERRKQEVAAVRRGSSQDHTQGDGGDGRASGSAPAVASAGF 392          
BLAST of mRNA_Ecto-sp13_S_contig13206.2597.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.080e-11
Identity = 47/130 (36.15%), Postives = 58/130 (44.62%), Query Frame = 0
Query:   75 VCPGETAYIANGACDDMNNNVYCGYDGGDCCSXXXXXXXXXXXXXXSPPSYFNCVDPAAACVGEENEDGGSDVADDAQQRYSSSGRAASASDESSASRLSDCVEQWIGDGACDDMNNSAECSYDGGDCCS 204
             C G   ++A+G CD +NNN  CGYDGGDCC                    F C+DP+A C            ADD               D+ +   + +C  + IGDG CD  NN  EC YDGGDCCS
Sbjct:  176 TCGGNIVHLADGDCDQINNNEECGYDGGDCCFCTCLDDFYECGIRG-----FACIDPSAEC------------ADD---------------DDVTVDTVENCGVRSIGDGQCDLDNNREECHYDGGDCCS 273          
BLAST of mRNA_Ecto-sp13_S_contig13206.2597.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 6.050e-9
Identity = 50/147 (34.01%), Postives = 59/147 (40.14%), Query Frame = 0
Query:   83 IANGACDDMNNNVYCGYDGGDCCSXXXXXXXXXXXXXX---SPPSY--FNCVDPAAACVGEENEDGGSDVADDAQQRYSSSGRAASASDESSASRLSDCVEQWIGDGACDDMNNSAECSYDGGDCC-----SEDGDYSECLDPAALA 219
            I NGACD + NN  C YDGGDCC                      Y  F C+DP A CV +                           D  +A  +  C    IG+G CDD NNS EC+YDGGDCC     S D  Y    +P + A
Sbjct:  166 IGNGACDSLLNNEDCAYDGGDCCECTCDPSRYPWYDSGVGCQTGMYGGFACIDPDAPCVDD---------------------------DIVTAEMMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFA 285          
BLAST of mRNA_Ecto-sp13_S_contig13206.2597.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.270e-6
Identity = 50/142 (35.21%), Postives = 62/142 (43.66%), Query Frame = 0
Query:   68 STSSEEYV-CPGETAYIANGACDDMNNNVYCGYDGGDCCSXXXXXXXXXXXXXXSPP--SYFNCVDPAAACVGEENEDGGSDVADDAQQRYSSSGRAASASDESSASRLSDCVE---QWIGDGACDDMNNSAECSYDGGDCC 203
            S  S EY+ C G T +I +G CD   NN  CG+DGGDCC+                     ++C+DP              DV DD     S +          +A    DC E   +W  DG CDD  N+AEC YDGGDCC
Sbjct:   58 SDGSPEYLGCLGYTNHIKDGYCDTDLNNAECGWDGGDCCACTCGSDSDEELAHPCGQLGDGYDCLDP--------------DVPDDCGVTPSPA----------AAIGYPDCEEYLYEWQ-DGVCDDNLNTAECGYDGGDCC 174          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13206.2597.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JRS7_9PHAE1.540e-14382.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT4_9PHAE4.080e-1136.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEP6_ECTSI6.050e-934.01Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7FX77_ECTSI3.270e-635.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 225..253
NoneNo IPR availableGENE3D3.30.300.240coord: 168..253
e-value: 5.3E-6
score: 28.5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 315..337
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..27
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 338..380
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 28..36
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 37..314
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.746
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 315..337
IPR000800Notch domainSMARTSM00004NL_2coord: 164..203
e-value: 0.0048
score: 19.5
coord: 69..105
e-value: 0.012
score: 16.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13206contigEcto-sp13_S_contig13206:662..2396 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13206.2597.1mRNA_Ecto-sp13_S_contig13206.2597.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13206 644..2396 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13206.2597.1 ID=prot_Ecto-sp13_S_contig13206.2597.1|Name=mRNA_Ecto-sp13_S_contig13206.2597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=380bp
MVMELRRRRRRRPRWLVMTLLATATASAASPTAILAESVARRVRAGPVRG
PRRLASADGRNSNNTGNSTSSEEYVCPGETAYIANGACDDMNNNVYCGYD
GGDCCSCTATAASGSASASASPPSYFNCVDPAAACVGEENEDGGSDVADD
AQQRYSSSGRAASASDESSASRLSDCVEQWIGDGACDDMNNSAECSYDGG
DCCSEDGDYSECLDPAALAASPSPYSEEEEEQEEGEEEEEEEEEEDQEQE
EAVFFSSDSNTAPPSPSPPPYNATESSGPSLGGEQDDPAVSSSSSPPGAS
SDETVGNSKPTLAKAFFGIGAACVVASGVAFLAVSYFRLAERRKQEVAAV
RRGSGQDHVRGDGGDGRASGSTPAVASDGF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000800Notch_dom