mRNA_Ecto-sp13_S_contig13206.2597.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13206.2597.1
Unique NamemRNA_Ecto-sp13_S_contig13206.2597.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13206.2597.1 vs. uniprot
Match: A0A6H5JRS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS7_9PHAE)

HSP 1 Score: 422 bits (1084), Expect = 1.920e-143
Identity = 297/362 (82.04%), Postives = 301/362 (83.15%), Query Frame = 1 
Query:  106 SPTAILAESVARRVRAGPVRGPRRLASADGRNSNNTGNSTSSEEYVCPGETAYIANGACDDMNNNVYCGYDGGDCCSXXXXXXXXXXXXXXSPPSYFNCVDPAAACVGEENEDGGSDVADDAQQRYSSSGRAASASDESSASRLSDCVEQWIGDGACDDMNNSAECSYDGGDCCSEDGDYSECLDPAALAASPSPYSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------SSDETVGNSKPTLAKAFFGIGAACVVASGVAFLAVSYFRLAERRKQEVAAVRRGSGQDHVRGDGGDGRASGSTPAVASDGF 1158
            SPTAILAESVA RVRAGPVRGPR+LASA+GR S  TGNS SSEEYVCPGETAYIANGACDDMNNNVYCGYDGGDCCS   XXXXXXXXXX SPPSYFNCVDPAAACVGEENEDGGSDVADDAQQRYSSSGRAASASDESSASRLSDCVEQWIGDGACDDMNNSAECSYDGGDCCSEDGDYSECLDP ALAA+ SPYSE   XXXXXXXXXXXXXXXXXXXXXXX   X  X                  XXX     XXXXXXXXXXXXX           SS ETV NSKPTLAKAFFGIGAACVV SGVAFL VSYFRLAERRKQEVAAVRRGS QDH +GDGGDGRASGS PAVAS GF
Sbjct:   32 SPTAILAESVAPRVRAGPVRGPRQLASANGRYST-TGNSASSEEYVCPGETAYIANGACDDMNNNVYCGYDGGDCCSCTAXXXXXXXXXXASPPSYFNCVDPAAACVGEENEDGGSDVADDAQQRYSSSGRAASASDESSASRLSDCVEQWIGDGACDDMNNSAECSYDGGDCCSEDGDYSECLDPDALAATSSPYSEEEEXXXXXXXXXXXXXXXXXXXXXXXEHEXHEXQESVFFSSDSNTAPPSPSXXXSNATEXXXXXXXXXXXXXXXXXXXXXXXASSRETVDNSKPTLAKAFFGIGAACVVVSGVAFLTVSYFRLAERRKQEVAAVRRGSSQDHTQGDGGDGRASGSAPAVASAGF 392
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BLAST of mRNA_Ecto-sp13_S_contig13206.2597.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.320e-11
Identity = 47/130 (36.15%), Postives = 58/130 (44.62%), Query Frame = 1 
Query:  241 VCPGETAYIANGACDDMNNNVYCGYDGGDCCSXXXXXXXXXXXXXXSPPSYFNCVDPAAACVGEENEDGGSDVADDAQQRYSSSGRAASASDESSASRLSDCVEQWIGDGACDDMNNSAECSYDGGDCCS 630
             C G   ++A+G CD +NNN  CGYDGGDCC                    F C+DP+A C            ADD               D+ +   + +C  + IGDG CD  NN  EC YDGGDCCS
Sbjct:  176 TCGGNIVHLADGDCDQINNNEECGYDGGDCCFCTCLDDFYECGIRG-----FACIDPSAEC------------ADD---------------DDVTVDTVENCGVRSIGDGQCDLDNNREECHYDGGDCCS 273
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BLAST of mRNA_Ecto-sp13_S_contig13206.2597.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 6.310e-9
Identity = 50/147 (34.01%), Postives = 59/147 (40.14%), Query Frame = 1 
Query:  265 IANGACDDMNNNVYCGYDGGDCCSXXXXXXXXXXXXXX---SPPSY--FNCVDPAAACVGEENEDGGSDVADDAQQRYSSSGRAASASDESSASRLSDCVEQWIGDGACDDMNNSAECSYDGGDCC-----SEDGDYSECLDPAALA 675
            I NGACD + NN  C YDGGDCC                      Y  F C+DP A CV +                           D  +A  +  C    IG+G CDD NNS EC+YDGGDCC     S D  Y    +P + A
Sbjct:  166 IGNGACDSLLNNEDCAYDGGDCCECTCDPSRYPWYDSGVGCQTGMYGGFACIDPDAPCVDD---------------------------DIVTAEMMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFA 285
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BLAST of mRNA_Ecto-sp13_S_contig13206.2597.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.410e-6
Identity = 50/142 (35.21%), Postives = 62/142 (43.66%), Query Frame = 1 
Query:  220 STSSEEYV-CPGETAYIANGACDDMNNNVYCGYDGGDCCSXXXXXXXXXXXXXXSPP--SYFNCVDPAAACVGEENEDGGSDVADDAQQRYSSSGRAASASDESSASRLSDCVE---QWIGDGACDDMNNSAECSYDGGDCC 627
            S  S EY+ C G T +I +G CD   NN  CG+DGGDCC+                     ++C+DP              DV DD     S +          +A    DC E   +W  DG CDD  N+AEC YDGGDCC
Sbjct:   58 SDGSPEYLGCLGYTNHIKDGYCDTDLNNAECGWDGGDCCACTCGSDSDEELAHPCGQLGDGYDCLDP--------------DVPDDCGVTPSPA----------AAIGYPDCEEYLYEWQ-DGVCDDNLNTAECGYDGGDCC 174
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13206.2597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JRS7_9PHAE1.920e-14382.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT4_9PHAE4.320e-1136.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEP6_ECTSI6.310e-934.01Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7FX77_ECTSI3.410e-635.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13206contigEcto-sp13_S_contig13206:644..2396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score65.9
Seed ortholog evalue4.8e-08
Seed eggNOG ortholog2880.D7FTI5
Model size1158
Hectar predicted targeting categorychloroplast
Exons3
EggNOG OGs2BFIX@1,2S176@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-15_003190.1
Cds size1140
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462707.0039122-UTR-Ecto-sp13_S_contig13206:643..6611681462707.0039122-UTR-Ecto-sp13_S_contig13206:643..661Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13206 644..661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462707.0161593-CDS-Ecto-sp13_S_contig13206:661..9541681462707.0161593-CDS-Ecto-sp13_S_contig13206:661..954Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13206 662..954 +
1681462707.0241203-CDS-Ecto-sp13_S_contig13206:1213..15071681462707.0241203-CDS-Ecto-sp13_S_contig13206:1213..1507Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13206 1214..1507 +
1681462707.0322747-CDS-Ecto-sp13_S_contig13206:1843..23961681462707.0322747-CDS-Ecto-sp13_S_contig13206:1843..2396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13206 1844..2396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13206.2597.1prot_Ecto-sp13_S_contig13206.2597.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13206 662..2396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13206.2597.1

>prot_Ecto-sp13_S_contig13206.2597.1 ID=prot_Ecto-sp13_S_contig13206.2597.1|Name=mRNA_Ecto-sp13_S_contig13206.2597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=380bp
MVMELRRRRRRRPRWLVMTLLATATASAASPTAILAESVARRVRAGPVRG
PRRLASADGRNSNNTGNSTSSEEYVCPGETAYIANGACDDMNNNVYCGYD
GGDCCSCTATAASGSASASASPPSYFNCVDPAAACVGEENEDGGSDVADD
AQQRYSSSGRAASASDESSASRLSDCVEQWIGDGACDDMNNSAECSYDGG
DCCSEDGDYSECLDPAALAASPSPYSEEEEEQEEGEEEEEEEEEEDQEQE
EAVFFSSDSNTAPPSPSPPPYNATESSGPSLGGEQDDPAVSSSSSPPGAS
SDETVGNSKPTLAKAFFGIGAACVVASGVAFLAVSYFRLAERRKQEVAAV
RRGSGQDHVRGDGGDGRASGSTPAVASDGF
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mRNA from alignment at Ecto-sp13_S_contig13206:644..2396+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13206.2597.1 ID=mRNA_Ecto-sp13_S_contig13206.2597.1|Name=mRNA_Ecto-sp13_S_contig13206.2597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13206:644..2396+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGATTTTTCGTCTAAGATGGTGATGGAGTTGCGACGACGACGACGTCG
ACGACCAAGATGGCTAGTAATGACCCTCCTCGCGACCGCCACTGCTTCGG
CGGCTTCTCCTACCGCGATTCTCGCGGAGAGCGTCGCCCGAAGGGTTCGA
GCTGGGCCCGTCAGGGGCCCTCGTCGGCTAGCCAGCGCCGACGGCAGAAA
CAGCAACAACACCGGAAACAGCACTTCCTCAGAGGAATATGTGTGCCCTG
GCGAGACGGCCTATATCGCAAACGGTGCATGCGACGACATGAACAATAAC
GTGTATTGTGGGTACGTGCGATGGTGCGGTAGACTGGAACGTTGTCGTAA
AACACGAAGTAGCACCACTGGCAGCAGCAGCAGCAGCAGCAGAAGCAGCA
GCAGAGACAGAGAGATGTAGGATACGTACGATATCTGTGTGGCTCAGGAG
AGGCATCTTCCGTTGAACTATGCGCACGTTTCGGTCGTAAACAGTCCCAC
CACCCTGCAAAATCACGCAATACCGGGTGAGAGCTGCATAATCGAAGGCC
TTTACTCTCTTCATCTCCAGGTACGACGGCGGCGATTGCTGCTCCTGCAC
AGCGACCGCAGCGTCCGGCAGCGCTTCGGCGAGCGCCTCTCCCCCTTCGT
ACTTCAACTGCGTCGACCCCGCCGCGGCTTGCGTTGGTGAAGAAAACGAA
GACGGCGGCAGCGACGTCGCCGACGACGCGCAACAACGTTACTCCTCTTC
CGGCAGAGCCGCCTCCGCCAGCGACGAAAGCAGCGCGTCGCGTCTGTCGG
ATTGCGTCGAGCAGTGGATTGGCGATGGCGCGTGCGACGACATGAACAAT
AGCGCGGAGTGCAGGTACGCCTCACGAGCAAGGTTCTTTTTTATTGAGGC
GCGGTCGTACAAGGACTGTCTCGTGACGTTTTCCCCCATGGTATTTGTGG
TGCGGGAAGTGTGTAGGACTCATAACACGGGCAGAATGTAATGGTGCATT
TGGTGGTTGGATCGGCGATATCGAGTACGCGACGACGAAGACCTCGCAGC
TCAACAACGACCAACCACAGCAGGCGACCACGACAACAAACCGCCGTCGT
CGACCATGGGCGCCTGAACGCTGTGCACGTGCGTCCGTTTTCGTTCCCCC
CGCTGTACGCACACGAACTCGTTGCCACAACGATCTTGCGCCTGCAACAG
CTACGACGGGGGAGACTGCTGCTCTGAGGACGGGGATTATTCGGAGTGTT
TGGACCCGGCCGCCCTTGCTGCTAGTCCCTCTCCCTACTCGGAGGAGGAG
GAGGAGCAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
TCAGGAGCAGGAGGAGGCGGTGTTTTTTTCTTCTGACAGCAACACCGCGC
CGCCATCACCATCACCTCCACCGTACAACGCAACGGAGAGCAGCGGCCCT
TCGCTCGGAGGAGAGCAGGACGATCCCGCCGTCTCGTCCTCCTCGTCTCC
GCCGGGTGCGTCGAGCGACGAAACCGTCGGCAACAGCAAGCCAACCCTCG
CGAAGGCGTTCTTCGGGATCGGGGCGGCGTGCGTCGTTGCGTCGGGCGTG
GCCTTCCTGGCTGTCAGCTACTTTCGCCTCGCCGAGAGGCGGAAGCAAGA
GGTGGCGGCGGTGAGAAGAGGCTCGGGTCAAGACCACGTCCGGGGTGATG
GTGGCGATGGACGAGCATCGGGGAGTACTCCAGCTGTTGCAAGTGATGGT
TTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13206:644..2396+

>mRNA_Ecto-sp13_S_contig13206.2597.1 ID=mRNA_Ecto-sp13_S_contig13206.2597.1|Name=mRNA_Ecto-sp13_S_contig13206.2597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1140bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13206:644..2396+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGATGGAGTTGCGACGACGACGACGTCGACGACCAAGATGGCTAGT
AATGACCCTCCTCGCGACCGCCACTGCTTCGGCGGCTTCTCCTACCGCGA
TTCTCGCGGAGAGCGTCGCCCGAAGGGTTCGAGCTGGGCCCGTCAGGGGC
CCTCGTCGGCTAGCCAGCGCCGACGGCAGAAACAGCAACAACACCGGAAA
CAGCACTTCCTCAGAGGAATATGTGTGCCCTGGCGAGACGGCCTATATCG
CAAACGGTGCATGCGACGACATGAACAATAACGTGTATTGTGGGTACGAC
GGCGGCGATTGCTGCTCCTGCACAGCGACCGCAGCGTCCGGCAGCGCTTC
GGCGAGCGCCTCTCCCCCTTCGTACTTCAACTGCGTCGACCCCGCCGCGG
CTTGCGTTGGTGAAGAAAACGAAGACGGCGGCAGCGACGTCGCCGACGAC
GCGCAACAACGTTACTCCTCTTCCGGCAGAGCCGCCTCCGCCAGCGACGA
AAGCAGCGCGTCGCGTCTGTCGGATTGCGTCGAGCAGTGGATTGGCGATG
GCGCGTGCGACGACATGAACAATAGCGCGGAGTGCAGCTACGACGGGGGA
GACTGCTGCTCTGAGGACGGGGATTATTCGGAGTGTTTGGACCCGGCCGC
CCTTGCTGCTAGTCCCTCTCCCTACTCGGAGGAGGAGGAGGAGCAGGAGG
AGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATCAGGAGCAGGAG
GAGGCGGTGTTTTTTTCTTCTGACAGCAACACCGCGCCGCCATCACCATC
ACCTCCACCGTACAACGCAACGGAGAGCAGCGGCCCTTCGCTCGGAGGAG
AGCAGGACGATCCCGCCGTCTCGTCCTCCTCGTCTCCGCCGGGTGCGTCG
AGCGACGAAACCGTCGGCAACAGCAAGCCAACCCTCGCGAAGGCGTTCTT
CGGGATCGGGGCGGCGTGCGTCGTTGCGTCGGGCGTGGCCTTCCTGGCTG
TCAGCTACTTTCGCCTCGCCGAGAGGCGGAAGCAAGAGGTGGCGGCGGTG
AGAAGAGGCTCGGGTCAAGACCACGTCCGGGGTGATGGTGGCGATGGACG
AGCATCGGGGAGTACTCCAGCTGTTGCAAGTGATGGTTTT
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