mRNA_Ecto-sp13_S_contig13188.2584.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13188.2584.1
Unique NamemRNA_Ecto-sp13_S_contig13188.2584.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13188.2584.1 vs. uniprot
Match: D7FSM1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSM1_ECTSI)

HSP 1 Score: 322 bits (824), Expect = 2.220e-101
Identity = 167/175 (95.43%), Postives = 168/175 (96.00%), Query Frame = 1 
Query:    1 WRLASGGDTAAVSPVEGEAGPAAAXXXXARGGVVGHVWVSLKLRDPSMLMMRVVRQWNMARDEASVQQRRAAQLEATRLWMFMPGISLWRVLLQLVGMSLLVSYCVTLTLRAFHSTRCRAAFNCDPETDPKLASLREWQTFADNMLSALSFLDMLLQFRTGYVDKNSKIIINPKK 525
            WRLASGGDTAAVSPVEGEAGPAAA    ARGGVVGHVWVSLKLRDPSMLMMRVVRQWNMARDEASVQQRRAAQLEA RLWMFMPGISLWRVLLQL GMSLLVSYCVTLTLRAFHSTRCRAAFNCDPETDPKLASLREWQT ADNMLSALSFLDMLLQFRTGYVDKNSKIII+PKK
Sbjct:  202 WRLASGGDTAAVSPVEGEAGPAAAAAA-ARGGVVGHVWVSLKLRDPSMLMMRVVRQWNMARDEASVQQRRAAQLEAKRLWMFMPGISLWRVLLQLAGMSLLVSYCVTLTLRAFHSTRCRAAFNCDPETDPKLASLREWQTLADNMLSALSFLDMLLQFRTGYVDKNSKIIIDPKK 375
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13188.2584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSM1_ECTSI2.220e-10195.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13188contigEcto-sp13_S_contig13188:1628..3523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score244.6
Seed ortholog evalue2.6e-62
Seed eggNOG ortholog2880.D7FSM1
Model size757
Hectar predicted targeting categorysignal anchor
Exons3
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsKOG0498@1,KOG0498@2759
Cds size399
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462705.9516528-UTR-Ecto-sp13_S_contig13188:1627..17681681462705.9516528-UTR-Ecto-sp13_S_contig13188:1627..1768Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13188 1628..1768 +
1681462706.003901-UTR-Ecto-sp13_S_contig13188:3306..35231681462706.003901-UTR-Ecto-sp13_S_contig13188:3306..3523Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13188 3307..3523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462705.972406-CDS-Ecto-sp13_S_contig13188:1768..18601681462705.972406-CDS-Ecto-sp13_S_contig13188:1768..1860Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13188 1769..1860 +
1681462705.983711-CDS-Ecto-sp13_S_contig13188:2439..26231681462705.983711-CDS-Ecto-sp13_S_contig13188:2439..2623Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13188 2440..2623 +
1681462705.9936512-CDS-Ecto-sp13_S_contig13188:3183..33061681462705.9936512-CDS-Ecto-sp13_S_contig13188:3183..3306Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13188 3184..3306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13188.2584.1prot_Ecto-sp13_S_contig13188.2584.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13188 1769..3306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13188.2584.1

>prot_Ecto-sp13_S_contig13188.2584.1 ID=prot_Ecto-sp13_S_contig13188.2584.1|Name=mRNA_Ecto-sp13_S_contig13188.2584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MLMMRVVRQWNMARDEASVQQRRAAQLEATRLWMFMPGISLWRVLLQLVG
MSLLVSYCVTLTLRAFHSTRCRAAFNCDPETDPKLASLREWQTFADNMLS
ALSFLDMLLQFRTGYVDKNSKIIINPKKARGG*
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mRNA from alignment at Ecto-sp13_S_contig13188:1628..3523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13188.2584.1 ID=mRNA_Ecto-sp13_S_contig13188.2584.1|Name=mRNA_Ecto-sp13_S_contig13188.2584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1896bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13188:1628..3523+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGAGGCTTGCTTCGGGCGGGGACACGGCTGCCGTGTCCCCGGTGGAGGG
GGAGGCGGGTCCCGCTGCTGCTGCTGCTGCTGCCGCCCGCGGCGGCGTGG
TGGGCCACGTGTGGGTGTCTCTGAAGCTGCGGGACCCCTCGATGCTCATG
ATGAGGGTGGTTCGGCAGTGGAACATGGCGAGGGATGAGGCGTCGGTGCA
GCAGCGACGAGCGGCCCAGCTGGAGGCGACGAGGTGAGGGTGGGAGTACT
GTAGGGTTTTTGTGGTGGTTCAAGGCGTTCATCTGTTGTTGTTCTTGTTG
TGCTTGTTGGTGGCGATGTTGCTACTGTTGTTGGATGTTGTTGTTGTTGC
TGATGTTGTTGTGGTTGTTGTGATAGTTGTCGTTGTGCTTGTTGGTGGTG
TTGCTTCTGCTGCTGTTGGGGGTTGTTGTTGTTGTACCCGTTGGTTGTAT
TGGTTGTCGGTGTGACTATCGTTGTTGGTTGGCTGCGCAAGTGTTGTGTC
GTCCCTCTTGCAACGCTTATGCCTGGCTCGGGCCCTTGGGTTACCCCGAC
TTTCTTGGCTGTGGTGAAACAGCGGTTTAGGCAACAGGACACAAGCCAAC
ACCATGACCTGGAATGTCCAACAACTTCGAAGAATTCAGGGGTATAAAAA
ACAACAGCATGTATCTACATCGCGACGCCGCTCCGGGCGTAGTAGTAACC
GGCTACAAGCTGCACGCGAGCATTTTCGTCGCCAGAAGTTGAAGTAATTT
ATTTATTTACGAACCGATGTTTTGTTGCCACACGCAACCGAATGATGGAC
CCGCCGAGGCAGGCTGTGGATGTTCATGCCCGGGATCTCTCTGTGGAGAG
TGCTGCTGCAGCTGGTGGGCATGTCGCTGCTGGTGAGCTACTGCGTCACC
CTCACCCTGCGGGCCTTCCACAGCACCCGCTGCAGGGCCGCCTTCAACTG
CGACCCCGAAACCGACCCCAAGCTCGCCAGCCTTCGAGAGTGGCAGGTGA
GCAAAAGAAAATGAAAAATCGGTATGAAAGTACAGCAAAACGCTTGAAAA
ACAGCGAAAAACTGGATCATCTTGGACGGATAGAATGGGTAGTTTCTCTG
TGATTGTATCCACTGTTTGTCTTCACATTAGGTACGCCTTTCTAAAAACA
AATCTAGGGTGTCTAGGGGGTTGCATGGAAATCGGGGTTGAACGTCGGGA
TCTCGATGGAAACGAAATGGGTGCGATCTGTCCCACCATTTGTCGCTGGG
AAGAACCCCCTTGTACTGCGGCCAGCCTCCGAGAGTGGCAGGTGAAAACG
GACGAAAGAAATAGGTATGAAATTACAGCGCAATAATTGGAGGGTGTACG
ATGCTGTTGTTGGTATGTTGCTGGACATTCTAGCTGTTGTCGCAGTGATC
GTCGTCGTCGTGACCGTTGTTGTTGTTGTTGTTGCTGTTGTTGTCTTCCC
CTATGCTTTTCTGCGACGTCGGGGACAGTAACCTCCACCCCTCGATGCAT
GTCGTCGCGTGTAATGCATGTCGTCGTGTGATGATTCTTCACTTCTTTCC
GCATAGACCTTCGCCGACAACATGCTGAGCGCCTTGTCCTTCCTAGATAT
GCTGCTTCAGTTCCGCACCGGATACGTCGACAAAAACTCCAAGATCATCA
TCAATCCCAAGAAGGCAAGAGGAGGTTGATGACGCTACGATTAGCGTTTG
TTGGGGTGTTTTAAGGTTGCATCGGTATTAACTTTCTGCGATAACGTCCC
ATCCAACTGCCGGGAAAGGATTGGTTCGGTAATTATGTCGTAGAGCGCTT
TCCTTACGCCTACCCGCCGGTTACCCCATCCTCTTGGTTGTGGGGAAATA
TACCTCCGAAAGTCAGCCTACAGGGGGGGAAACACTCGGACAAAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13188:1628..3523+

>mRNA_Ecto-sp13_S_contig13188.2584.1 ID=mRNA_Ecto-sp13_S_contig13188.2584.1|Name=mRNA_Ecto-sp13_S_contig13188.2584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13188:1628..3523+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCATGATGAGGGTGGTTCGGCAGTGGAACATGGCGAGGGATGAGGC
GTCGGTGCAGCAGCGACGAGCGGCCCAGCTGGAGGCGACGAGGCTGTGGA
TGTTCATGCCCGGGATCTCTCTGTGGAGAGTGCTGCTGCAGCTGGTGGGC
ATGTCGCTGCTGGTGAGCTACTGCGTCACCCTCACCCTGCGGGCCTTCCA
CAGCACCCGCTGCAGGGCCGCCTTCAACTGCGACCCCGAAACCGACCCCA
AGCTCGCCAGCCTTCGAGAGTGGCAGACCTTCGCCGACAACATGCTGAGC
GCCTTGTCCTTCCTAGATATGCTGCTTCAGTTCCGCACCGGATACGTCGA
CAAAAACTCCAAGATCATCATCAATCCCAAGAAGGCAAGAGGAGGTTGA
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