prot_Ecto-sp13_S_contig13178.2578.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13178.2578.1
Unique Nameprot_Ecto-sp13_S_contig13178.2578.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length100
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13178.2578.1 vs. uniprot
Match: D7FUR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR0_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 9.050e-26
Identity = 84/93 (90.32%), Postives = 86/93 (92.47%), Query Frame = 0 
Query:    1 MAMPAFHGYHGILALELVLAWVSFSPIFPLLAAPRRDFPHQEPPSPAPRVLCAXXXXXXXXXXXXXXXXXXXXXXXXXXX-SAEQHGRLGNGI 92
            MAMPA  GYHGILALELVLAWVSFSPIFPLLAAPRRDFPH+EPPSPAPRVLCAXXXXXXXXXXXXXXXXXXXXXXXXX   SAEQH  LG+GI
Sbjct:    1 MAMPACLGYHGILALELVLAWVSFSPIFPLLAAPRRDFPHEEPPSPAPRVLCAXXXXXXXXXXXXXXXXXXXXXXXXXEAASAEQHRGLGDGI 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13178.2578.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUR0_ECTSI9.050e-2690.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 72..99
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..52
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..71
NoneNo IPR availableTMHMMTMhelixcoord: 49..71
NoneNo IPR availableTMHMMTMhelixcoord: 12..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13178contigEcto-sp13_S_contig13178:2752..4767 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13178.2578.1mRNA_Ecto-sp13_S_contig13178.2578.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13178 2752..4767 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13178.2578.1 ID=prot_Ecto-sp13_S_contig13178.2578.1|Name=mRNA_Ecto-sp13_S_contig13178.2578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MAMPAFHGYHGILALELVLAWVSFSPIFPLLAAPRRDFPHQEPPSPAPRV
LCAAAATAVVTATAASTMALLRRRRRMAAASAEQHGRLGNGIVSVTGVK*
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