mRNA_Ecto-sp13_S_contig13178.2578.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13178.2578.1
Unique NamemRNA_Ecto-sp13_S_contig13178.2578.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13178.2578.1 vs. uniprot
Match: D7FUR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR0_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 9.050e-26
Identity = 84/93 (90.32%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:    1 MAMPAFHGYHGILALELVLAWVSFSPIFPLLAAPRRDFPHQEPPSPAPRVLCAXXXXXXXXXXXXXXXXXXXXXXXXXXX-SAEQHGRLGNGI 276
            MAMPA  GYHGILALELVLAWVSFSPIFPLLAAPRRDFPH+EPPSPAPRVLCAXXXXXXXXXXXXXXXXXXXXXXXXX   SAEQH  LG+GI
Sbjct:    1 MAMPACLGYHGILALELVLAWVSFSPIFPLLAAPRRDFPHEEPPSPAPRVLCAXXXXXXXXXXXXXXXXXXXXXXXXXEAASAEQHRGLGDGI 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13178.2578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUR0_ECTSI9.050e-2690.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13178contigEcto-sp13_S_contig13178:2752..4767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score104.8
Seed ortholog evalue2.4e-20
Seed eggNOG ortholog2880.D7FUR0
Preferred namePIGF
Model size300
KEGG rclassRC00017,RC00089
KEGG koko:K04708,ko:K05287,ko:K12831,ko:K19845,ko:K20405,ko:K22132
KEGG ReactionR02978,R05923,R05924,R08107
KEGG Pathwayko00563,ko00600,ko01100,ko03040,ko04011,ko04150,map00563,map00600,map01100,map03040,map04011,map04150
KEGG ModuleM00065,M00094,M00099,M00352
Hectar predicted targeting categorychloroplast
GOsGO:0000234,GO:0003674,GO:0003824,GO:0004307,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006665,GO:0006666,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008610,GO:0008654,GO:0008757,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016254,GO:0016491,GO:0016651,GO:0016740,GO:0016741,GO:0016772,GO:0016780,GO:0017169,GO:0019538,GO:0019637,GO:0030447,GO:0031224,GO:0031984,GO:0032259,GO:0034645,GO:0036211,GO:0040007,GO:0042157,GO:0042158,GO:0042175,GO:0042180,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0046519,GO:0051377,GO:0055114,GO:0071704,GO:0090407,GO:0097164,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
Exons2
EggNOG free text desc.GPI anchor biosynthetic process
EggNOG OGsKOG3144@1,KOG3144@2759
EC1.1.1.102
Cds size300
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462705.4557855-CDS-Ecto-sp13_S_contig13178:2751..28491681462705.4557855-CDS-Ecto-sp13_S_contig13178:2751..2849Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13178 2752..2849 +
1681462705.474677-CDS-Ecto-sp13_S_contig13178:4565..47671681462705.474677-CDS-Ecto-sp13_S_contig13178:4565..4767Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13178 4566..4767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13178.2578.1prot_Ecto-sp13_S_contig13178.2578.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13178 2752..4767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13178.2578.1

>prot_Ecto-sp13_S_contig13178.2578.1 ID=prot_Ecto-sp13_S_contig13178.2578.1|Name=mRNA_Ecto-sp13_S_contig13178.2578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MAMPAFHGYHGILALELVLAWVSFSPIFPLLAAPRRDFPHQEPPSPAPRV
LCAAAATAVVTATAASTMALLRRRRRMAAASAEQHGRLGNGIVSVTGVK*
back to top

mRNA from alignment at Ecto-sp13_S_contig13178:2752..4767+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13178.2578.1 ID=mRNA_Ecto-sp13_S_contig13178.2578.1|Name=mRNA_Ecto-sp13_S_contig13178.2578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2016bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13178:2752..4767+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGATGCCTGCCTTCCACGGCTACCATGGAATCCTGGCGCTGGAATT
GGTGCTAGCTTGGGTCAGCTTCTCGCCTATCTTTCCGCTTCTAGCCGCGT
GAGTGTCTGGCATCCAACCCCTATCTCTTGCCCATGTTCTTCTGTCGCCA
ACAGCAGACGCTGCACACATGGAGTCTGGTTTAGCAAGCAGAGGACCTCG
GTAGGGAGCTTAAGTTAGAGGGGTTTTGTGGGGGGGATAGATGGATACGG
CGGTGAGTGCAGAGCAAGTCGTTATTTTTGTCATCGTGCACTAACAACGC
ACCTGCTATAGCTAACAGCGCGAAGTATCGGAAGTTCTTGTTTACGCCGG
TGCGCCGCGCACTCTAGTTGGCTGAGGGATCCAACAACGTAGCTGCTGCA
GTGAAAAACCGTTGAATCCGACGGCGGTACTGCGTACAGCTTCTCTTGGT
CATCTCCACGTTTGAAATCCATTTTTTCTCGTGCACCCCCGTTCCGAGAC
ATCCGAACACCGCCTCCCCCACCGCTCCTCCGCGAGATCGGAAGCAACAG
AGTGGTAGACGCACCGTCCGTCGAAGAACATGATGTCTCCGTCTCCACAA
CAAGTTGGGGTGTGTGACTTTAATTATTTTTCAGGACGGAGACTGACTGC
TGCTCTCCTGCCATGCGGTCGTTCTCTCGTTGCCATTGGACAATAGTAGT
CCCTTCCTAGACTTCTCCGTCTCCACAACAGATGGGGTGTGTGATTTTGA
TTAATTATTTTTCAGGTTTGGGGAGTACTAGAAGTGCTGACTGCTGTGAA
TAGTACGGCACTTTGTCCTTCTTGCTGCTGTGGTACGGAATGCACTTGTC
CCAACTCTGTTTCGTACTCTGCCCTTGTGAGCCGACAGTCGAAGCCGTCC
ATTTTGGACACATCGAGGTGTACTCCAGTATGCATAGGATAAGACAGAAC
CGCTCTTTACCGCACACGCACACACCTGGACACGTTACACAGCTGCACAG
ATGCAACCTGGGCGCCATCACAGCAGCGCGGGTTTTACACCAGAACTGCT
GTAGGTACTGGTGTGATCTTCGACCTTGTGACCACGGCGACGCGAGCCGA
GACATTTTGTGCTCGGTGTGGGTTGGTTGGAACGTTGCACGCCAAACACT
TGCGCTACAACCTCTCTCTGGGCGTAGCAAGGCCTAACATGGCTTTGCTT
CTACGCGCAAGGCATCCGGCGTTCGCTGCTCCAATAACCACGTTCCATGT
GTGACCCTGGATGGTTGTAGTACAGTAGTACGAATGAATAAACTGACAAG
TGTAGGACCAAGGCCGCATGCAAGGGATGCACTGGCCGTTGATTGTCCAT
AGGCAGGTCGGCAGGCAAGAGGTTGCTGAGTTCCACGTGCGATCCGTGCT
CTAGGGGTGTGTTGCATACGCAGAACCTCGGGGCGGGTTTCTAGACACTA
TCCCTGTGTCGGATTTAGAACGATGAATCCCCGTCACAGTCTGACCTTGT
CACCCCTCGCGAAGTCTCTACATACACTGAAAAGTGCAGTACACGTCTTA
CCACGAAAAATGGGGCGACTGTCGCCATAGTAAACAGGACGAAAACACAC
ACACGTGTGTGTTCGGTTCGCATCCACCCGAAAACCTTGACGGAACATCC
CTCCTTCGAGTATCCGTAACGCTTCTTCAGAAAACAAGCATACAATCACT
GATTAAGTGACTACGCCTTCCAGATAACACCACAGCAGTCCACCGTCGGC
TTGACTCTGAGGACATACATTTTGAACGTTTTTTCTGCTGCCTGTCTTCG
TCGCGTACGCACAGGCCTCGCCGAGACTTTCCACACCAAGAGCCTCCCTC
CCCAGCCCCGCGGGTGTTGTGCGCGGCCGCAGCCACCGCTGTCGTGACGG
CCACGGCGGCGTCCACCATGGCGCTGCTGAGGCGGAGGAGGAGGATGGCG
GCAGCGAGTGCCGAACAGCACGGTCGACTGGGCAATGGGATCGTGAGTGT
CACGGGGGTAAAATAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13178:2752..4767+

>mRNA_Ecto-sp13_S_contig13178.2578.1 ID=mRNA_Ecto-sp13_S_contig13178.2578.1|Name=mRNA_Ecto-sp13_S_contig13178.2578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13178:2752..4767+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGATGCCTGCCTTCCACGGCTACCATGGAATCCTGGCGCTGGAATT
GGTGCTAGCTTGGGTCAGCTTCTCGCCTATCTTTCCGCTTCTAGCCGCGC
CTCGCCGAGACTTTCCACACCAAGAGCCTCCCTCCCCAGCCCCGCGGGTG
TTGTGCGCGGCCGCAGCCACCGCTGTCGTGACGGCCACGGCGGCGTCCAC
CATGGCGCTGCTGAGGCGGAGGAGGAGGATGGCGGCAGCGAGTGCCGAAC
AGCACGGTCGACTGGGCAATGGGATCGTGAGTGTCACGGGGGTAAAATAA
back to top