mRNA_Ecto-sp13_S_contig13120.2542.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13120.2542.1
Unique NamemRNA_Ecto-sp13_S_contig13120.2542.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13120.2542.1 vs. uniprot
Match: A0A2I7R0R9_9CAUD (GIY-YIG nuclease superfamily protein n=1 Tax=Vibrio phage 1.097.O._10N.286.49.B3 TaxID=1881383 RepID=A0A2I7R0R9_9CAUD)

HSP 1 Score: 56.6 bits (135), Expect = 9.910e-8
Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:   13 VYVLKLEDGCWFVGLADNISETVALHREQ-QFDGWTQAHKASQVVTREMAPMVKRQKDLARWERLETMNIARQHGVDRVRGYNWT 264
            VYV++LEDGCW++G   +I + + LH        WT+ HK  +VV  E     +R+ +L       T+ +AR++G  +VRG  WT
Sbjct:    5 VYVIRLEDGCWYIGYTTDIKQRINLHLNTVSGPKWTKLHKPIEVVHIEECDGPEREVEL-------TLELARRYGCAQVRGGAWT 82
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BLAST of mRNA_Ecto-sp13_S_contig13120.2542.1 vs. uniprot
Match: A0A1Y5I9J6_OSTTA (Uncharacterized protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5I9J6_OSTTA)

HSP 1 Score: 57.0 bits (136), Expect = 2.500e-7
Identity = 34/112 (30.36%), Postives = 54/112 (48.21%), Query Frame = 1 
Query:   10 GVYVLKLEDGCWFVGLADNISETVALHREQQFDGWTQAHKASQVVTREMAPMVKRQKDLARWERLETMNIARQHGVDRVRGYNWTGCYLTDSERQDFVRAVRHHIGVCERCG 345
            GVYVL+L  G ++VG + +I + V  H         + H     + ++  P+   Q+DL  WER ET+    QHG+ RVRG+ + G  L+  +             +C +CG
Sbjct:    5 GVYVLELNSGWFYVGSSGDIDKRVEQHENSLL---VRVHGG---IYKKHPPVKPCQEDLRSWERAETLERMMQHGISRVRGWEFQGDTLSLDKLHTIKNLFIGDFDLCRKCG 110
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BLAST of mRNA_Ecto-sp13_S_contig13120.2542.1 vs. uniprot
Match: A0A7Z0TV98_9GAMM (GIY-YIG nuclease family protein n=1 Tax=Luteimonas deserti TaxID=2752306 RepID=A0A7Z0TV98_9GAMM)

HSP 1 Score: 49.3 bits (116), Expect = 6.390e-5
Identity = 36/107 (33.64%), Postives = 55/107 (51.40%), Query Frame = 1 
Query:   13 VYVLKLEDGCWFVGLADNISETVALHREQQFDGWTQAHKASQVVTREMAPMVKRQKDLARWERLE---TMNIARQHGVDRVRGYNWTG-CYLTDSERQDFVRAVRHH 321
            VYVL+L+DGC++VG +    E +  H   +   WT+ H   +V+    A  VK  +D    ER+E   T+ + R HG  RVRG  W+  C ++ +      R + HH
Sbjct:   15 VYVLELQDGCYYVGQSCKFRERIYQHFTNKGSAWTRLHPPVKVIC---AKTVKT-RDWKVAERIENRLTIFLMRHHGWTRVRGGFWSNTCEISTA------RNLEHH 111
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13120.2542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2I7R0R9_9CAUD9.910e-836.47GIY-YIG nuclease superfamily protein n=1 Tax=Vibri... [more]
A0A1Y5I9J6_OSTTA2.500e-730.36Uncharacterized protein n=1 Tax=Ostreococcus tauri... [more]
A0A7Z0TV98_9GAMM6.390e-533.64GIY-YIG nuclease family protein n=1 Tax=Luteimonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13120contigEcto-sp13_S_contig13120:626..1404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons2
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462702.7427874-CDS-Ecto-sp13_S_contig13120:625..8501681462702.7427874-CDS-Ecto-sp13_S_contig13120:625..850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13120 626..850 -
1681462702.7544038-CDS-Ecto-sp13_S_contig13120:1263..14041681462702.7544038-CDS-Ecto-sp13_S_contig13120:1263..1404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13120 1264..1404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13120.2542.1prot_Ecto-sp13_S_contig13120.2542.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13120 626..1404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13120.2542.1

>prot_Ecto-sp13_S_contig13120.2542.1 ID=prot_Ecto-sp13_S_contig13120.2542.1|Name=mRNA_Ecto-sp13_S_contig13120.2542.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
NGPGVYVLKLEDGCWFVGLADNISETVALHREQQFDGWTQAHKASQVVTR
EMAPMVKRQKDLARWERLETMNIARQHGVDRVRGYNWTGCYLTDSERQDF
VRAVRHHIGVCERCGKGFHVYH
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mRNA from alignment at Ecto-sp13_S_contig13120:626..1404-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13120.2542.1 ID=mRNA_Ecto-sp13_S_contig13120.2542.1|Name=mRNA_Ecto-sp13_S_contig13120.2542.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=779bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13120:626..1404- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGGGCCGGGGGTCTATGTTCTGAAGTTGGAGGACGGCTGTTGGTTCGT
CGGATTAGCAGACAACATCTCGGAGACGGTCGCTCTACACAGGGAACAGC
AATTTGACGGATGGACACAAGCGCACAAGGCAAGTCAAGTGGTCGCCTGA
TAAATTTCGGTTCCGTTTTGAAGATCGAGACACATGCCGTACGTAGATAA
CCAGGAGCAAGAATAGCAGGAGGGTCCGATCGTTGGGCATTGGCTCCTGT
CACCGTTTTGCTTGTTGTTTACACCCAATATTGCGTACTGTCAGCTCACC
AGTATAACACGACAAGCACAGAGGTGAAGCTGCCGGGTCCAGCCCCCTTT
GTACTTCTTTGACGAATTGTTCCCGCCACTGCGGCGACCATTCGACGCAA
AAACATGTCTTGAGGTGTTTGTTCCCCCTCCTTGCTTTCAGGAGATACTT
CGCTAGCATGCAAACGCGTTCTAGTAAATCACGTGTGGCGCCTTGAAAAC
ATAGAATTTCGACTTCCTCACGCCACACCCTTGTGGTGGTTATCTTAATA
ATAGGTGACTCGCGAGATGGCTCCCATGGTAAAGCGGCAGAAGGATCTTG
CAAGATGGGAGCGACTCGAGACTATGAACATCGCGAGACAACACGGGGTC
GACAGGGTTCGGGGGTATAATTGGACGGGCTGTTATCTGACTGACTCTGA
GAGGCAGGACTTTGTGCGTGCGGTTCGCCACCATATTGGGGTGTGTGAGA
GGTGCGGCAAGGGGTTTCACGTTTATCAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13120:626..1404-

>mRNA_Ecto-sp13_S_contig13120.2542.1 ID=mRNA_Ecto-sp13_S_contig13120.2542.1|Name=mRNA_Ecto-sp13_S_contig13120.2542.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13120:626..1404- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGGGCCGGGGGTCTATGTTCTGAAGTTGGAGGACGGCTGTTGGTTCGT
CGGATTAGCAGACAACATCTCGGAGACGGTCGCTCTACACAGGGAACAGC
AATTTGACGGATGGACACAAGCGCACAAGGCAAGTCAAGTGGTGACTCGC
GAGATGGCTCCCATGGTAAAGCGGCAGAAGGATCTTGCAAGATGGGAGCG
ACTCGAGACTATGAACATCGCGAGACAACACGGGGTCGACAGGGTTCGGG
GGTATAATTGGACGGGCTGTTATCTGACTGACTCTGAGAGGCAGGACTTT
GTGCGTGCGGTTCGCCACCATATTGGGGTGTGTGAGAGGTGCGGCAAGGG
GTTTCACGTTTATCAT
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