Homology
BLAST of mRNA_Ecto-sp13_S_contig10227.252.1 vs. uniprot
Match:
A0A6H5KW87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW87_9PHAE)
HSP 1 Score: 263 bits (672), Expect = 7.410e-86
Identity = 142/147 (96.60%), Postives = 142/147 (96.60%), Query Frame = 1
Query: 1 EQLSDSGVSHSKKLAELADVTQELNRTKVALERAERLVFDQRREADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCASFCSCFRGKPAYRRVASPAPFAPPPGSSPGDSPWLREETVGSLSGG 441
EQLSDSGVS SKKLAELADVTQEL RTK ALERAERLVFDQRREADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCASFCSCFRGKPAYRRVASPAPFAPP GSSPGDSPWL EETVGSLSGG
Sbjct: 164 EQLSDSGVSQSKKLAELADVTQELKRTKAALERAERLVFDQRREADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCASFCSCFRGKPAYRRVASPAPFAPPLGSSPGDSPWLGEETVGSLSGG 310
BLAST of mRNA_Ecto-sp13_S_contig10227.252.1 vs. uniprot
Match:
D8LU91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU91_ECTSI)
HSP 1 Score: 253 bits (645), Expect = 5.870e-83
Identity = 138/147 (93.88%), Postives = 138/147 (93.88%), Query Frame = 1
Query: 1 EQLSDSGVSHSKKLAELADVTQELNRTKVALERAERLVFDQRREADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCASFCSCFRGKPAYRRVASPAPFAPPPGSSPGDSPWLREETVGSLSGG 441
EQLSDSGVS SKKLAELADVTQEL TK ALERAERLVFDQRREADERQ DEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCA FCSCFRGKPAYRRVASPAPFAPPPGSSPGD PWL EETV SLSGG
Sbjct: 85 EQLSDSGVSQSKKLAELADVTQELKLTKAALERAERLVFDQRREADERQRDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCALFCSCFRGKPAYRRVASPAPFAPPPGSSPGDIPWLGEETVASLSGG 231
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10227.252.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 7.41e-86 / Id = 96.60 Expect = 5.87e-83 / Id = 93.88 Sequence A0A6H5KW87_9PHAE D8LU91_ECTSI
Match Name E-value Identity Description
A0A6H5KW87_9PHAE 7.410e-86 96.60 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D8LU91_ECTSI 5.870e-83 93.88 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 0 Model size 465 Hectar predicted targeting category other localisation Exons 3 Cds size 465
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462516.9037292-CDS-Ecto-sp13_S_contig10227:53..186 1681462516.9037292-CDS-Ecto-sp13_S_contig10227:53..186 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10227 54..186 + 1681462516.9189785-CDS-Ecto-sp13_S_contig10227:473..565 1681462516.9189785-CDS-Ecto-sp13_S_contig10227:473..565 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10227 474..565 + 1681462516.9302764-CDS-Ecto-sp13_S_contig10227:1211..1451 1681462516.9302764-CDS-Ecto-sp13_S_contig10227:1211..1451 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10227 1212..1451 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10227.252.1
>prot_Ecto-sp13_S_contig10227.252.1 ID=prot_Ecto-sp13_S_contig10227.252.1|Name=mRNA_Ecto-sp13_S_contig10227.252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp
EQLSDSGVSHSKKLAELADVTQELNRTKVALERAERLVFDQRREADERQC back to top mRNA from alignment at Ecto-sp13_S_contig10227:54..1451+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10227.252.1 ID=mRNA_Ecto-sp13_S_contig10227.252.1|Name=mRNA_Ecto-sp13_S_contig10227.252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1398bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10227:54..1451+ (Ectocarpus species13 EcNAP12_S_4_19m)GAGCAGCTGTCAGATTCCGGGGTTTCGCATTCGAAGAAGCTGGCTGAGCT
GGCCGACGTGACGCAAGAGCTCAATCGTACGAAGGTGGCGTTGGAGCGAG
CCGAGAGGCTAGTGTTCGACCAACGACGGGAAG GTTCGTACGGCGATACG
GCCGCTTCGAAGAAGTCAAAATGCTAACAGACCGTCAGCAGTTGTTGTGT
GTCGTATGACCCGCACCGGGCTTACGGGAAAGCCTGCCTCTGGCCTCCCC
TGACGTCTCACATACAGCAGCACGATTGTTGTGGGTATGACATGTTGTTG
CTATCGTTGACTTGATCTTGATGTAATCTGCTGTCCAACGTGCTGTGCGT
CCAACTGGTTGATTTGGGGGGTTCCGCGATATCGCAACGGTATCTGCCTG
ACGGGGATCGGGTGGCGCAGCGGACGAGAGGCAGTGCGACGAAGACCGCC
GGCGAGCGGAGACGGAGGCGCTGAGAGATAAGCTCACCCGCGTGGAGCGG
AAAAACACAGAG GTATGTACACCTAGAGTAAATATTACACAGCCACAAAT
CACGCCGCACGTAAGCTTTCCATGAAGTGCTCCAAATCCGTAGGCGTGCG
AACATGGCCCATTTAGTGCACACACGCGTTTTTTTTTGCAAGCAACAAGT
CCACGGATTGGTTGGCACAGAGGTGTGTACGCCACCAAGAGCACAGCAAA
GCAAGGTCGCAGAGACCTCACCAAAAGCCTGTACATCAAGTTAAAATTCG
TGCGTGTGTGCCCTCGGCGGCAGCGGCGATTCTCAAGACCGCGGCAGATG
TCGCGCTGCTCGTTTAGTACACGCCCGCGCTCCTCCGAAGTCCTTCCTCC
ACCTCGTTTTCCTCCCTCCTTTCCGGATGCACATACCCCGAGGGGGCCCC
AACCACCTGCGTTCCCCCCTTGTGCCCGTGCGTACATACGCCGGTCTCTT
TCTTTGTTTCCGTGGTTGGGTCGGTGTGCCACATGTACTTGCTACGTCGC
AGCTGTTTGATGGACTCGTTTCGCAGACACACTCGGGGCTTCCTCCTCAC
GTACCTGCCGAGTATTGATCGTGTTCTCCGTTTATTTAACCCTACTCTGC
TTGTTTCCTGCCTACAACCTGGGCCCGCCGCTGTGTTGCTGCTGTTAAAA
AAAAACAGCTGATGGCGAAGCAGGCGGCCGGGCGGCTGGCCAAGCGAATG
CGCGGAAATTTCGGGAGGAGCAGCACGTTCTGCGCGTCGTTCTGCAGCTG
CTTCCGGGGGAAGCCGGCCTACCGGCGGGTGGCGTCGCCGGCGCCGTTTG
CGCCCCCTCCCGGCTCGTCGCCAGGGGATAGCCCGTGGCTGAGAGAGGAA
ACCGTCGGCTCGCTCAGCGGCGGTGGCGGCGGCGGCCGGGGGTTGTAG back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10227:54..1451+
>mRNA_Ecto-sp13_S_contig10227.252.1 ID=mRNA_Ecto-sp13_S_contig10227.252.1|Name=mRNA_Ecto-sp13_S_contig10227.252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10227:54..1451+ (Ectocarpus species13 EcNAP12_S_4_19m) back to top