mRNA_Ecto-sp13_S_contig10227.252.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10227.252.1
Unique NamemRNA_Ecto-sp13_S_contig10227.252.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10227.252.1 vs. uniprot
Match: A0A6H5KW87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW87_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 7.410e-86
Identity = 142/147 (96.60%), Postives = 142/147 (96.60%), Query Frame = 1 
Query:    1 EQLSDSGVSHSKKLAELADVTQELNRTKVALERAERLVFDQRREADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCASFCSCFRGKPAYRRVASPAPFAPPPGSSPGDSPWLREETVGSLSGG 441
            EQLSDSGVS SKKLAELADVTQEL RTK ALERAERLVFDQRREADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCASFCSCFRGKPAYRRVASPAPFAPP GSSPGDSPWL EETVGSLSGG
Sbjct:  164 EQLSDSGVSQSKKLAELADVTQELKRTKAALERAERLVFDQRREADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCASFCSCFRGKPAYRRVASPAPFAPPLGSSPGDSPWLGEETVGSLSGG 310
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BLAST of mRNA_Ecto-sp13_S_contig10227.252.1 vs. uniprot
Match: D8LU91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU91_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 5.870e-83
Identity = 138/147 (93.88%), Postives = 138/147 (93.88%), Query Frame = 1 
Query:    1 EQLSDSGVSHSKKLAELADVTQELNRTKVALERAERLVFDQRREADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCASFCSCFRGKPAYRRVASPAPFAPPPGSSPGDSPWLREETVGSLSGG 441
            EQLSDSGVS SKKLAELADVTQEL  TK ALERAERLVFDQRREADERQ DEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCA FCSCFRGKPAYRRVASPAPFAPPPGSSPGD PWL EETV SLSGG
Sbjct:   85 EQLSDSGVSQSKKLAELADVTQELKLTKAALERAERLVFDQRREADERQRDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCALFCSCFRGKPAYRRVASPAPFAPPPGSSPGDIPWLGEETVASLSGG 231
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10227.252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KW87_9PHAE7.410e-8696.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU91_ECTSI5.870e-8393.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10227contigEcto-sp13_S_contig10227:54..1451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size465
Hectar predicted targeting categoryother localisation
Exons3
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462516.9037292-CDS-Ecto-sp13_S_contig10227:53..1861681462516.9037292-CDS-Ecto-sp13_S_contig10227:53..186Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10227 54..186 +
1681462516.9189785-CDS-Ecto-sp13_S_contig10227:473..5651681462516.9189785-CDS-Ecto-sp13_S_contig10227:473..565Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10227 474..565 +
1681462516.9302764-CDS-Ecto-sp13_S_contig10227:1211..14511681462516.9302764-CDS-Ecto-sp13_S_contig10227:1211..1451Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10227 1212..1451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10227.252.1prot_Ecto-sp13_S_contig10227.252.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10227 54..1451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10227.252.1

>prot_Ecto-sp13_S_contig10227.252.1 ID=prot_Ecto-sp13_S_contig10227.252.1|Name=mRNA_Ecto-sp13_S_contig10227.252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp
EQLSDSGVSHSKKLAELADVTQELNRTKVALERAERLVFDQRREADERQC
DEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFC
ASFCSCFRGKPAYRRVASPAPFAPPPGSSPGDSPWLREETVGSLSGGGGG
GRGL*
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mRNA from alignment at Ecto-sp13_S_contig10227:54..1451+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10227.252.1 ID=mRNA_Ecto-sp13_S_contig10227.252.1|Name=mRNA_Ecto-sp13_S_contig10227.252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1398bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10227:54..1451+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCAGCTGTCAGATTCCGGGGTTTCGCATTCGAAGAAGCTGGCTGAGCT
GGCCGACGTGACGCAAGAGCTCAATCGTACGAAGGTGGCGTTGGAGCGAG
CCGAGAGGCTAGTGTTCGACCAACGACGGGAAGGTTCGTACGGCGATACG
GCCGCTTCGAAGAAGTCAAAATGCTAACAGACCGTCAGCAGTTGTTGTGT
GTCGTATGACCCGCACCGGGCTTACGGGAAAGCCTGCCTCTGGCCTCCCC
TGACGTCTCACATACAGCAGCACGATTGTTGTGGGTATGACATGTTGTTG
CTATCGTTGACTTGATCTTGATGTAATCTGCTGTCCAACGTGCTGTGCGT
CCAACTGGTTGATTTGGGGGGTTCCGCGATATCGCAACGGTATCTGCCTG
ACGGGGATCGGGTGGCGCAGCGGACGAGAGGCAGTGCGACGAAGACCGCC
GGCGAGCGGAGACGGAGGCGCTGAGAGATAAGCTCACCCGCGTGGAGCGG
AAAAACACAGAGGTATGTACACCTAGAGTAAATATTACACAGCCACAAAT
CACGCCGCACGTAAGCTTTCCATGAAGTGCTCCAAATCCGTAGGCGTGCG
AACATGGCCCATTTAGTGCACACACGCGTTTTTTTTTGCAAGCAACAAGT
CCACGGATTGGTTGGCACAGAGGTGTGTACGCCACCAAGAGCACAGCAAA
GCAAGGTCGCAGAGACCTCACCAAAAGCCTGTACATCAAGTTAAAATTCG
TGCGTGTGTGCCCTCGGCGGCAGCGGCGATTCTCAAGACCGCGGCAGATG
TCGCGCTGCTCGTTTAGTACACGCCCGCGCTCCTCCGAAGTCCTTCCTCC
ACCTCGTTTTCCTCCCTCCTTTCCGGATGCACATACCCCGAGGGGGCCCC
AACCACCTGCGTTCCCCCCTTGTGCCCGTGCGTACATACGCCGGTCTCTT
TCTTTGTTTCCGTGGTTGGGTCGGTGTGCCACATGTACTTGCTACGTCGC
AGCTGTTTGATGGACTCGTTTCGCAGACACACTCGGGGCTTCCTCCTCAC
GTACCTGCCGAGTATTGATCGTGTTCTCCGTTTATTTAACCCTACTCTGC
TTGTTTCCTGCCTACAACCTGGGCCCGCCGCTGTGTTGCTGCTGTTAAAA
AAAAACAGCTGATGGCGAAGCAGGCGGCCGGGCGGCTGGCCAAGCGAATG
CGCGGAAATTTCGGGAGGAGCAGCACGTTCTGCGCGTCGTTCTGCAGCTG
CTTCCGGGGGAAGCCGGCCTACCGGCGGGTGGCGTCGCCGGCGCCGTTTG
CGCCCCCTCCCGGCTCGTCGCCAGGGGATAGCCCGTGGCTGAGAGAGGAA
ACCGTCGGCTCGCTCAGCGGCGGTGGCGGCGGCGGCCGGGGGTTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10227:54..1451+

>mRNA_Ecto-sp13_S_contig10227.252.1 ID=mRNA_Ecto-sp13_S_contig10227.252.1|Name=mRNA_Ecto-sp13_S_contig10227.252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10227:54..1451+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCAGCTGTCAGATTCCGGGGTTTCGCATTCGAAGAAGCTGGCTGAGCT
GGCCGACGTGACGCAAGAGCTCAATCGTACGAAGGTGGCGTTGGAGCGAG
CCGAGAGGCTAGTGTTCGACCAACGACGGGAAGCGGACGAGAGGCAGTGC
GACGAAGACCGCCGGCGAGCGGAGACGGAGGCGCTGAGAGATAAGCTCAC
CCGCGTGGAGCGGAAAAACACAGAGCTGATGGCGAAGCAGGCGGCCGGGC
GGCTGGCCAAGCGAATGCGCGGAAATTTCGGGAGGAGCAGCACGTTCTGC
GCGTCGTTCTGCAGCTGCTTCCGGGGGAAGCCGGCCTACCGGCGGGTGGC
GTCGCCGGCGCCGTTTGCGCCCCCTCCCGGCTCGTCGCCAGGGGATAGCC
CGTGGCTGAGAGAGGAAACCGTCGGCTCGCTCAGCGGCGGTGGCGGCGGC
GGCCGGGGGTTGTAG
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