Homology
BLAST of mRNA_Ecto-sp13_S_contig10226.251.1 vs. uniprot
Match:
D8LR68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR68_ECTSI)
HSP 1 Score: 174 bits (440), Expect = 3.040e-51
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 1
Query: 49 MPQNRLSASPFREGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDGIRSWLLDWPVAGKIRGMCVSPDLQCVLCATDG 321
MPQNR SAS FR GGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDGIRSWLLDWPVAGKIRGMCVSPDLQCVLCAT+G
Sbjct: 1 MPQNRFSASSFRGGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDGIRSWLLDWPVAGKIRGMCVSPDLQCVLCATEG 91
BLAST of mRNA_Ecto-sp13_S_contig10226.251.1 vs. uniprot
Match:
A0A6H5KV72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV72_9PHAE)
HSP 1 Score: 173 bits (438), Expect = 6.260e-48
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 1
Query: 49 MPQNRLSASPFREGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDGIRSWLLDWPVAGKIRGMCVSPDLQCVLCATDG 321
MPQNR SAS FREGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSD IRSWLLDWPVAGKIRGMCVSPDLQCVLCAT+G
Sbjct: 1 MPQNRFSASSFREGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDCIRSWLLDWPVAGKIRGMCVSPDLQCVLCATEG 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10226.251.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 3.04e-51 / Id = 95.60 Expect = 6.26e-48 / Id = 95.60 Sequence D8LR68_ECTSI A0A6H5KV72_9PHAE
Match Name E-value Identity Description
D8LR68_ECTSI 3.040e-51 95.60 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5KV72_9PHAE 6.260e-48 95.60 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 0 Model size 324 Hectar predicted targeting category other localisation Exons 3 Cds size 321
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462516.8497632-CDS-Ecto-sp13_S_contig10226:4467..4491 1681462516.8497632-CDS-Ecto-sp13_S_contig10226:4467..4491 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10226 4468..4491 + 1681462516.8598645-CDS-Ecto-sp13_S_contig10226:4919..5159 1681462516.8598645-CDS-Ecto-sp13_S_contig10226:4919..5159 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10226 4920..5159 + 1681462516.870028-CDS-Ecto-sp13_S_contig10226:5856..5913 1681462516.870028-CDS-Ecto-sp13_S_contig10226:5856..5913 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10226 5857..5913 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10226.251.1
>prot_Ecto-sp13_S_contig10226.251.1 ID=prot_Ecto-sp13_S_contig10226.251.1|Name=mRNA_Ecto-sp13_S_contig10226.251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
RRSSFASSCVGTPIVNMPQNRLSASPFREGGGEQEAAAKNVGIEVFAHGA back to top mRNA from alignment at Ecto-sp13_S_contig10226:4468..5914+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10226.251.1 ID=mRNA_Ecto-sp13_S_contig10226.251.1|Name=mRNA_Ecto-sp13_S_contig10226.251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10226:4468..5914+ (Ectocarpus species13 EcNAP12_S_4_19m)AGGAGATCATCGTTCGCTAGTTCG GTAGGTGCGGGGGGTCTCCCCTCTCA
GGTGCTGCTGTGTGTATTCTTCTGATTGCAAGATCCCAGGAGCTGGAATG
TAGTAAGGTATAGTCCCGGGAGCTGCTGGTATGTACTTAGGTATGGGAAT
CATGGGGCTCACATCATTTTGATGTAGTCGGCAGTTGAGGTGGTCAGGCC
CAAGAACCAAGAACTGTTCTTGTCTCCGACGATTTGGGTGTAGAAGCATG
TAGTCTACAGCCTTCTCTCGGCAACTGCACGAAGTTACGACGGAAACGGC
CACGGCAACGTACTTGCTGCGGAGATATTTAAGTGTTTAAGTGTTTATTT
GCGTCAAGACCCATCTCTCTCTCTCTCTCTCTCTCTCTTTCTGTGTCTCT
CTCCCCCCCTCTCTCCCCCCCCCATCCCCTCGCTCTCTCTCTTTCTCTCT
AGTGCGTGGGCACACCGATCGTCAACATGCCCCAGAATCGCCTCTCGGCC
TCCCCTTTCCGCGAGGGCGGCGGAGAGCAGGAGGCCGCGGCGAAGAATGT
CGGCATCGAAGTCTTCGCGCACGGGGCTTTGGGCACGGACGCTCTTCTTG
TGGCGTCGCTATCCAACTCTGCTCTCCTCATCTTGCGGATCGGATCTGAC
GGTATTCGAAGCTGGCTGTTAGACTGGCCCGTTGCGGGCAAG GTGAGAAT
GGATGCACGTTTGGTCCTTGGATATCTCAGACGAAGATGGCCCTTAGTTT
GCCAGGTGGAGCTGCTAGCGTAGCACAGGTGGCTCCTTTTTGCTCCACAG
CAGTCTATTGCCTGCTAAATTTTGCGTTGTTGCGGCGTGACAATAATGGT
TACAGTAGTGCAGCTGTGTCTCACGGGTCGGGTTACATCTTAGCTCGTGC
CCCCCACGCGCGCTTGGAGGCCTACGAAACCTGATCTACGAACTCTGCAA
GGTACGGCGTTATGTCTTTGTTTTCGAAGCATACCTGCATGCCACGGCGG
TGTTTCCCTGCAGGTGAATCCACCACAGAGCGGCCGCGGTGAGGGATTGG
GATGTTGGGATTACACAGCAGTATTTACATGCGATGTAGAAAAGTCTTCC
GATTTTTGTTTCGGTTCGAGCACGTGGGAGAATGTCAACGTGAAGCGGCC
ACCGGCATCACATGCTGTCACCCACGTAGTAGCGAGACTCAAACCGTTTG
TCATCCCATGTTGATGGCTACTAGACGCTAACGTGTCCTCCTCGGCGAAA
TAGTACGAAACCGCCGTTGCATCGGCGTCGCAATCGCAGGAAACGCGCCC
AAACCGCGGCAACGCTACACCTCACCAAAATCACTCGGACAGTCGTGTCC
CCCCCATCCCGTAACTAACACAAAACAACCAATAACCAGATTCGGGGGAT
GTGCGTCAGCCCGGACCTGCAGTGCGTCCTCTGCGCGACCGACGGT back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10226:4468..5914+
>mRNA_Ecto-sp13_S_contig10226.251.1 ID=mRNA_Ecto-sp13_S_contig10226.251.1|Name=mRNA_Ecto-sp13_S_contig10226.251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10226:4468..5914+ (Ectocarpus species13 EcNAP12_S_4_19m) back to top