mRNA_Ecto-sp13_S_contig10226.251.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10226.251.1 vs. uniprot
Match: D8LR68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR68_ECTSI) HSP 1 Score: 174 bits (440), Expect = 3.040e-51 Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 1 Query: 49 MPQNRLSASPFREGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDGIRSWLLDWPVAGKIRGMCVSPDLQCVLCATDG 321
MPQNR SAS FR GGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDGIRSWLLDWPVAGKIRGMCVSPDLQCVLCAT+G
Sbjct: 1 MPQNRFSASSFRGGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDGIRSWLLDWPVAGKIRGMCVSPDLQCVLCATEG 91
BLAST of mRNA_Ecto-sp13_S_contig10226.251.1 vs. uniprot
Match: A0A6H5KV72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV72_9PHAE) HSP 1 Score: 173 bits (438), Expect = 6.260e-48 Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 1 Query: 49 MPQNRLSASPFREGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDGIRSWLLDWPVAGKIRGMCVSPDLQCVLCATDG 321
MPQNR SAS FREGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSD IRSWLLDWPVAGKIRGMCVSPDLQCVLCAT+G
Sbjct: 1 MPQNRFSASSFREGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDCIRSWLLDWPVAGKIRGMCVSPDLQCVLCATEG 91 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10226.251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10226.251.1 >prot_Ecto-sp13_S_contig10226.251.1 ID=prot_Ecto-sp13_S_contig10226.251.1|Name=mRNA_Ecto-sp13_S_contig10226.251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp RRSSFASSCVGTPIVNMPQNRLSASPFREGGGEQEAAAKNVGIEVFAHGAback to top mRNA from alignment at Ecto-sp13_S_contig10226:4468..5914+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10226.251.1 ID=mRNA_Ecto-sp13_S_contig10226.251.1|Name=mRNA_Ecto-sp13_S_contig10226.251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10226:4468..5914+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10226:4468..5914+ >mRNA_Ecto-sp13_S_contig10226.251.1 ID=mRNA_Ecto-sp13_S_contig10226.251.1|Name=mRNA_Ecto-sp13_S_contig10226.251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10226:4468..5914+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |