mRNA_Ecto-sp13_S_contig10226.251.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10226.251.1
Unique NamemRNA_Ecto-sp13_S_contig10226.251.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10226.251.1 vs. uniprot
Match: D8LR68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR68_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 3.040e-51
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 1 
Query:   49 MPQNRLSASPFREGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDGIRSWLLDWPVAGKIRGMCVSPDLQCVLCATDG 321
            MPQNR SAS FR GGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDGIRSWLLDWPVAGKIRGMCVSPDLQCVLCAT+G
Sbjct:    1 MPQNRFSASSFRGGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDGIRSWLLDWPVAGKIRGMCVSPDLQCVLCATEG 91
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BLAST of mRNA_Ecto-sp13_S_contig10226.251.1 vs. uniprot
Match: A0A6H5KV72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV72_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 6.260e-48
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 1 
Query:   49 MPQNRLSASPFREGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDGIRSWLLDWPVAGKIRGMCVSPDLQCVLCATDG 321
            MPQNR SAS FREGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSD IRSWLLDWPVAGKIRGMCVSPDLQCVLCAT+G
Sbjct:    1 MPQNRFSASSFREGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDCIRSWLLDWPVAGKIRGMCVSPDLQCVLCATEG 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10226.251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LR68_ECTSI3.040e-5195.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV72_9PHAE6.260e-4895.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10226contigEcto-sp13_S_contig10226:4468..5914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size324
Hectar predicted targeting categoryother localisation
Exons3
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462516.8497632-CDS-Ecto-sp13_S_contig10226:4467..44911681462516.8497632-CDS-Ecto-sp13_S_contig10226:4467..4491Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10226 4468..4491 +
1681462516.8598645-CDS-Ecto-sp13_S_contig10226:4919..51591681462516.8598645-CDS-Ecto-sp13_S_contig10226:4919..5159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10226 4920..5159 +
1681462516.870028-CDS-Ecto-sp13_S_contig10226:5856..59131681462516.870028-CDS-Ecto-sp13_S_contig10226:5856..5913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10226 5857..5913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10226.251.1prot_Ecto-sp13_S_contig10226.251.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10226 4468..5913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10226.251.1

>prot_Ecto-sp13_S_contig10226.251.1 ID=prot_Ecto-sp13_S_contig10226.251.1|Name=mRNA_Ecto-sp13_S_contig10226.251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
RRSSFASSCVGTPIVNMPQNRLSASPFREGGGEQEAAAKNVGIEVFAHGA
LGTDALLVASLSNSALLILRIGSDGIRSWLLDWPVAGKIRGMCVSPDLQC
VLCATDG
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mRNA from alignment at Ecto-sp13_S_contig10226:4468..5914+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10226.251.1 ID=mRNA_Ecto-sp13_S_contig10226.251.1|Name=mRNA_Ecto-sp13_S_contig10226.251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10226:4468..5914+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAGATCATCGTTCGCTAGTTCGGTAGGTGCGGGGGGTCTCCCCTCTCA
GGTGCTGCTGTGTGTATTCTTCTGATTGCAAGATCCCAGGAGCTGGAATG
TAGTAAGGTATAGTCCCGGGAGCTGCTGGTATGTACTTAGGTATGGGAAT
CATGGGGCTCACATCATTTTGATGTAGTCGGCAGTTGAGGTGGTCAGGCC
CAAGAACCAAGAACTGTTCTTGTCTCCGACGATTTGGGTGTAGAAGCATG
TAGTCTACAGCCTTCTCTCGGCAACTGCACGAAGTTACGACGGAAACGGC
CACGGCAACGTACTTGCTGCGGAGATATTTAAGTGTTTAAGTGTTTATTT
GCGTCAAGACCCATCTCTCTCTCTCTCTCTCTCTCTCTTTCTGTGTCTCT
CTCCCCCCCTCTCTCCCCCCCCCATCCCCTCGCTCTCTCTCTTTCTCTCT
AGTGCGTGGGCACACCGATCGTCAACATGCCCCAGAATCGCCTCTCGGCC
TCCCCTTTCCGCGAGGGCGGCGGAGAGCAGGAGGCCGCGGCGAAGAATGT
CGGCATCGAAGTCTTCGCGCACGGGGCTTTGGGCACGGACGCTCTTCTTG
TGGCGTCGCTATCCAACTCTGCTCTCCTCATCTTGCGGATCGGATCTGAC
GGTATTCGAAGCTGGCTGTTAGACTGGCCCGTTGCGGGCAAGGTGAGAAT
GGATGCACGTTTGGTCCTTGGATATCTCAGACGAAGATGGCCCTTAGTTT
GCCAGGTGGAGCTGCTAGCGTAGCACAGGTGGCTCCTTTTTGCTCCACAG
CAGTCTATTGCCTGCTAAATTTTGCGTTGTTGCGGCGTGACAATAATGGT
TACAGTAGTGCAGCTGTGTCTCACGGGTCGGGTTACATCTTAGCTCGTGC
CCCCCACGCGCGCTTGGAGGCCTACGAAACCTGATCTACGAACTCTGCAA
GGTACGGCGTTATGTCTTTGTTTTCGAAGCATACCTGCATGCCACGGCGG
TGTTTCCCTGCAGGTGAATCCACCACAGAGCGGCCGCGGTGAGGGATTGG
GATGTTGGGATTACACAGCAGTATTTACATGCGATGTAGAAAAGTCTTCC
GATTTTTGTTTCGGTTCGAGCACGTGGGAGAATGTCAACGTGAAGCGGCC
ACCGGCATCACATGCTGTCACCCACGTAGTAGCGAGACTCAAACCGTTTG
TCATCCCATGTTGATGGCTACTAGACGCTAACGTGTCCTCCTCGGCGAAA
TAGTACGAAACCGCCGTTGCATCGGCGTCGCAATCGCAGGAAACGCGCCC
AAACCGCGGCAACGCTACACCTCACCAAAATCACTCGGACAGTCGTGTCC
CCCCCATCCCGTAACTAACACAAAACAACCAATAACCAGATTCGGGGGAT
GTGCGTCAGCCCGGACCTGCAGTGCGTCCTCTGCGCGACCGACGGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10226:4468..5914+

>mRNA_Ecto-sp13_S_contig10226.251.1 ID=mRNA_Ecto-sp13_S_contig10226.251.1|Name=mRNA_Ecto-sp13_S_contig10226.251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10226:4468..5914+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAGATCATCGTTCGCTAGTTCGTGCGTGGGCACACCGATCGTCAACAT
GCCCCAGAATCGCCTCTCGGCCTCCCCTTTCCGCGAGGGCGGCGGAGAGC
AGGAGGCCGCGGCGAAGAATGTCGGCATCGAAGTCTTCGCGCACGGGGCT
TTGGGCACGGACGCTCTTCTTGTGGCGTCGCTATCCAACTCTGCTCTCCT
CATCTTGCGGATCGGATCTGACGGTATTCGAAGCTGGCTGTTAGACTGGC
CCGTTGCGGGCAAGATTCGGGGGATGTGCGTCAGCCCGGACCTGCAGTGC
GTCCTCTGCGCGACCGACGGT
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