mRNA_Ecto-sp13_S_contig10226.250.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10226.250.1
Unique NamemRNA_Ecto-sp13_S_contig10226.250.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: D8LR67_ECTSI (Uroporphyrinogen-III C-methyltransferase, putative chloroplast n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR67_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 9.310e-93
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 1
Query:    1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVRRSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLSDAAEGMFAGVDKERVASAAERVAEKKEGLFSEKAGDKVPVRRQA 453
            QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELC DLVRRSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLSDAAEGMFAGVDKERVASAAERVAEKKEGLFS +AG+KVPVRRQA
Sbjct:  252 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCADLVRRSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLSDAAEGMFAGVDKERVASAAERVAEKKEGLFSGEAGEKVPVRRQA 402          
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: A0A835ZDP8_9STRA (Tetrapyrrole methylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP8_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.450e-40
Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 1
Query:    1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVRRSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLSDAA 330
            QV LGTGY +DY  PDI DYHP++TAVFLMA+GRL+ELC DL+RR YP  TPVAI+E+ASTP QR +K TV+TI+ VA    V+APATI+VG+VV VLHG  QGL+ D A
Sbjct:  434 QVVLGTGYAKDYGTPDISDYHPEQTAVFLMAVGRLKELCADLMRRGYPAATPVAIVESASTPTQRTVKATVETITAVATEHAVRAPATIIVGDVVRVLHGDAQGLIQDVA 543          
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: A0A6T5QQD2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QQD2_HETAK)

HSP 1 Score: 118 bits (295), Expect = 4.560e-29
Identity = 55/107 (51.40%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVRRSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLS 321
            Q+ +GTGYGQ+  +  I  YHP++TAVFLMA+GRL  LC DL    YP D PVAIIE ASTP QR++ G + +I  +A   +VK P+ +V G VV+ LHG ++GL++
Sbjct:  220 QLVIGTGYGQNCTKTGITPYHPERTAVFLMAVGRLPTLCADLAAEGYPADCPVAIIEKASTPEQRLVLGKISSIVALAEEHRVKPPSIVVFGAVVAALHGAKEGLVA 326          
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: A0A7S4QY92_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QY92_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.660e-28
Identity = 55/115 (47.83%), Postives = 77/115 (66.96%), Query Frame = 1
Query:    1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVR-RSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLSDAAEGMF 342
            QV + TGYG++   PD+  YHP++T VFLMA+GRL  LCE L    +YP+  PVAI+ENA  P QR I G+++ I+ +A   KV  P+TIVVG+VV VL   E G++++   G+ 
Sbjct:   26 QVVMCTGYGRENTSPDLIQYHPEQTVVFLMAVGRLRTLCERLQSLANYPSTVPVAIVENAGRPFQRTIVGSIENIADIAEAAKVVPPSTIVVGDVVRVLLEDENGIIAEKTNGVM 140          
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: B8C0W2_THAPS (TP_methylase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0W2_THAPS)

HSP 1 Score: 107 bits (268), Expect = 4.180e-26
Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 1
Query:    1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVRRS-YPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVL 294
            QV + TGYG++   P++  YH ++T VFLMA+GRL  LCE+LV+ + YP +TPV I+E A  P QRV+ GT++TI+ +A    VK P+TIVVGEVV+VL
Sbjct:  135 QVVMCTGYGRNNTSPELIQYHKEQTVVFLMAVGRLRTLCENLVKMAGYPIETPVGIVERAGCPDQRVVVGTMETIADLAEEYDVKPPSTIVVGEVVNVL 233          
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: A0A7S4QY78_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QY78_9STRA)

HSP 1 Score: 111 bits (277), Expect = 6.920e-26
Identity = 55/115 (47.83%), Postives = 77/115 (66.96%), Query Frame = 1
Query:    1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVR-RSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLSDAAEGMF 342
            QV + TGYG++   PD+  YHP++T VFLMA+GRL  LCE L    +YP+  PVAI+ENA  P QR I G+++ I+ +A   KV  P+TIVVG+VV VL   E G++++   G+ 
Sbjct:  290 QVVMCTGYGRENTSPDLIQYHPEQTVVFLMAVGRLRTLCERLQSLANYPSTVPVAIVENAGRPFQRTIVGSIENIADIAEAAKVVPPSTIVVGDVVRVLLEDENGIIAEKTNGVM 404          
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: K0RL04_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RL04_THAOC)

HSP 1 Score: 105 bits (262), Expect = 2.720e-25
Identity = 51/99 (51.52%), Postives = 72/99 (72.73%), Query Frame = 1
Query:    1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVRRS-YPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVL 294
            QV + TGYG+D   PD+  Y  ++T VFLMA+GRL  LC++L R++ +P DTPVAI+E A  P QR + GT+++I+ +A    V+ P+TIVVGEVV+VL
Sbjct:  104 QVVMCTGYGRDNTSPDLIQYQKEQTVVFLMAVGRLRTLCDNLHRKANFPVDTPVAIVERAGCPDQRTVVGTMESIADIAEANNVRPPSTIVVGEVVNVL 202          
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: A0A6U3YBR3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3YBR3_9STRA)

HSP 1 Score: 107 bits (268), Expect = 8.350e-25
Identity = 50/99 (50.51%), Postives = 72/99 (72.73%), Query Frame = 1
Query:    1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVRRS-YPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVL 294
            QV + TGYG++   PD+  YHP++T VFLMA+GRL +LC+ L+ ++ YP  TPV I+E A  P QR + GT+++I+ +A    V+ P+TIVVGEVV+VL
Sbjct:  264 QVVMCTGYGKNNTSPDLIQYHPEQTVVFLMAVGRLRKLCDSLIHQAGYPPQTPVGIVERAGCPEQRTVVGTMESIADLAERFNVRPPSTIVVGEVVNVL 362          
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: A0A7S0HSB0_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HSB0_9CRYP)

HSP 1 Score: 106 bits (265), Expect = 1.410e-24
Identity = 51/103 (49.51%), Postives = 71/103 (68.93%), Query Frame = 1
Query:    1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVRRSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQ 309
            +V   TG G++ + PD+  YHP++T VFLMA+GRLE L +DL R  YP  TPV IIE A+TP +R I+GT+  I  +A   +++ P+ IVVGE V+VL  PE+
Sbjct:  239 RVVFCTGMGKEESVPDVPAYHPEQTCVFLMAVGRLEALTDDLTREGYPQSTPVGIIERATTPHERTIRGTISDIVNLAHEEQIRPPSVIVVGEAVNVLCKPEK 341          
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: A0A7S2LDV1_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LDV1_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.180e-24
Identity = 52/114 (45.61%), Postives = 74/114 (64.91%), Query Frame = 1
Query:    1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVR-RSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLSDAAEGM 339
            QV + TGYG++   PD+  YH ++T VFLMA+GRL ELC++L    +YP DTPVA++E A  P QR + G ++TI+       +K P+TIVVGEVV VL     G + +  +G+
Sbjct:  207 QVVMCTGYGRNGTSPDLIQYHKEQTVVFLMAVGRLRELCDNLCNLANYPRDTPVAVVEKAGCPEQRTVVGDLNTIADYCIRYDIKPPSTIVVGEVVDVLLNEGVGSMEERVQGL 320          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR67_ECTSI9.310e-9397.35Uroporphyrinogen-III C-methyltransferase, putative... [more]
A0A835ZDP8_9STRA1.450e-4066.36Tetrapyrrole methylase n=1 Tax=Tribonema minus Tax... [more]
A0A6T5QQD2_HETAK4.560e-2951.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4QY92_9STRA7.660e-2847.83Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B8C0W2_THAPS4.180e-2653.54TP_methylase domain-containing protein (Fragment) ... [more]
A0A7S4QY78_9STRA6.920e-2647.83Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0RL04_THAOC2.720e-2551.52Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A6U3YBR3_9STRA8.350e-2550.51Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S0HSB0_9CRYP1.410e-2449.51Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S2LDV1_9STRA3.180e-2445.61Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10226contigEcto-sp13_S_contig10226:134..1019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score285.0
Seed ortholog evalue2e-74
Seed eggNOG ortholog2880.D8LR67
Model size456
KEGG rclassRC00003,RC00871
KEGG koko:K00589
KEGG ReactionR03194
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.uroporphyrin-III C-methyltransferase activity
EggNOG OGsCOG0007@1,KOG1527@2759
Ec32 ortholog descriptionuroporphyrinogen-III C-methyltransferase, putative chloroplast precursor
Ec32 orthologEc-06_004170.1
EC2.1.1.107
Cds size456
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462516.7982864-CDS-Ecto-sp13_S_contig10226:133..3271681462516.7982864-CDS-Ecto-sp13_S_contig10226:133..327Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10226 134..327 +
1681462516.8115852-CDS-Ecto-sp13_S_contig10226:757..10191681462516.8115852-CDS-Ecto-sp13_S_contig10226:757..1019Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10226 758..1019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10226.250.1prot_Ecto-sp13_S_contig10226.250.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10226 134..1019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10226.250.1

>prot_Ecto-sp13_S_contig10226.250.1 ID=prot_Ecto-sp13_S_contig10226.250.1|Name=mRNA_Ecto-sp13_S_contig10226.250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp
QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVRRSYPTD
TPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHG
PEQGLLSDAAEGMFAGVDKERVASAAERVAEKKEGLFSEKAGDKVPVRRQ
A*
back to top

mRNA from alignment at Ecto-sp13_S_contig10226:134..1019+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10226.250.1 ID=mRNA_Ecto-sp13_S_contig10226.250.1|Name=mRNA_Ecto-sp13_S_contig10226.250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=886bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10226:134..1019+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTAACGCTCGGCACCGGTTACGGGCAGGACTACGCGCGCCCGGACAT CTGCGACTACCACCCGCAGAAGACGGCCGTCTTCCTCATGGCGATCGGTC GCCTGGAGGAGCTTTGCGAGGACCTCGTGCGCCGCTCCTACCCGACAGAC ACCCCCGTGGCCATCATCGAGAACGCCTCCACTCCTCGACAAAGGTATTG AGTCGTGGTGGGCGGGGGCTGCTTTCTTCGTCGTGTGTGCAGCAGACGCC ACGGTCTGTTCGGTTGTGTTGTAGTGGGGAGTAGGACTTGGTGCTACGCT GGTTGTCTTGTGTCTATGCGCTTACGATAAGCGATGGGTCGCCCTCATGT GTCTTTCGTGCTGAGTACATTCATGGTGGCGGTGGCCATTTTTCTTGTGG CGGAGTTTGGACGGAAAAAGTGTTCGGTGGATGGCGTGGGAGTTCAGTCC GTAGCCGTGGCTTGTCTCTTGTACTTTTCGTCTTTGTTACTTTGGCGATG CCGATATTCACTCCTCATTTCCCTACCAACGCATATACACGCATCCCTCC CGTTGTTGCAGCCCCCCCCCCCACCACCTGTCCATCGTTTCCTCCGTGCC AATTGATGCTACAACGCTTGGCAGGGTCATCAAGGGCACCGTGGACACGA TTTCGAAGGTGGCGCGCGGGCTGAAGGTGAAGGCGCCGGCCACCATCGTC GTCGGGGAGGTCGTGAGCGTCCTGCACGGGCCCGAGCAGGGCCTCCTAAG CGATGCCGCGGAGGGGATGTTCGCTGGCGTGGACAAGGAGAGGGTCGCGA GCGCCGCCGAGAGAGTCGCGGAGAAGAAGGAAGGCCTGTTCAGCGAAAAA GCGGGGGACAAGGTGCCTGTTCGCCGTCAAGCGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10226:134..1019+

>mRNA_Ecto-sp13_S_contig10226.250.1 ID=mRNA_Ecto-sp13_S_contig10226.250.1|Name=mRNA_Ecto-sp13_S_contig10226.250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10226:134..1019+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTAACGCTCGGCACCGGTTACGGGCAGGACTACGCGCGCCCGGACAT
CTGCGACTACCACCCGCAGAAGACGGCCGTCTTCCTCATGGCGATCGGTC
GCCTGGAGGAGCTTTGCGAGGACCTCGTGCGCCGCTCCTACCCGACAGAC
ACCCCCGTGGCCATCATCGAGAACGCCTCCACTCCTCGACAAAGGGTCAT
CAAGGGCACCGTGGACACGATTTCGAAGGTGGCGCGCGGGCTGAAGGTGA
AGGCGCCGGCCACCATCGTCGTCGGGGAGGTCGTGAGCGTCCTGCACGGG
CCCGAGCAGGGCCTCCTAAGCGATGCCGCGGAGGGGATGTTCGCTGGCGT
GGACAAGGAGAGGGTCGCGAGCGCCGCCGAGAGAGTCGCGGAGAAGAAGG
AAGGCCTGTTCAGCGAAAAAGCGGGGGACAAGGTGCCTGTTCGCCGTCAA
GCGTGA
back to top