mRNA_Ecto-sp13_S_contig13043.2499.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: D8LCC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCC2_ECTSI) HSP 1 Score: 394 bits (1011), Expect = 7.100e-133 Identity = 195/200 (97.50%), Postives = 197/200 (98.50%), Query Frame = 1
Query: 1 DISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQGIAKAGAVITAGAACTLVGLSLKDLVLGARGGDYDEDY 600
DISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLH GWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAI LLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQG+AKAGAVITA AACTLVGLSLKDLV+GARGGDYDEDY
Sbjct: 387 DISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLHLGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAITLLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQGVAKAGAVITASAACTLVGLSLKDLVIGARGGDYDEDY 586
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: D7FS55_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS55_ECTSI) HSP 1 Score: 172 bits (436), Expect = 6.080e-50 Identity = 82/151 (54.30%), Postives = 104/151 (68.87%), Query Frame = 1
Query: 4 ISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAGWDELRGR 456
+SPW + A L Q+ WC SFR WARDSGLLW PA LLGGT LGG H ++R A +M+ LQY VH+P+SLHFGW+SCATLVN N Y + + S++ KL +L S+ +AV L VA+ DP+YA VVAWAL AV S GW +++GR
Sbjct: 131 LSPWLSSAFLVQSCWCLSFREWARDSGLLWFPAALLGGTAACLGGAHHVVRGALAAGEMSNLQYGLVHLPVSLHFGWVSCATLVNFNNYISLL-PFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKGWAKMKGR 280
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: A0A835Z9R9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9R9_9STRA) HSP 1 Score: 167 bits (422), Expect = 1.460e-47 Identity = 89/188 (47.34%), Postives = 122/188 (64.89%), Query Frame = 1
Query: 1 DISPWFAGAMLFQALWCFSFRPWARDSGL--LWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQGIAKAGA-VITAGAACTLVGLSLK 555
++SP+F+GAML Q LWC +FRPWAR +GL W+PALLLG ALGG H IL +A S+++ L Y VPL+LHFGW++ A LVN NG+ A S+ VK A+ S+ AV +G A+ R DPIYAAV+AWAL A+ A W +LRG+V+ +++ Q+ AK G+ + A AA L +L+
Sbjct: 114 ELSPYFSGAMLLQTLWCGAFRPWARAAGLNLQWIPALLLGLGAAALGGAHGILVQALEDSELSPLSYALAFVPLALHFGWLTAAALVNANGFVAAAAPRSHAVKASAAIASIYLAVLVGAAVTFARRDPIYAAVIAWALAAIADEAAWGKLRGQVDETVLQIQRLTAKGGSRAMLAVAAAPLAAQALR 301
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: A0A7S2UXB1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXB1_9STRA) HSP 1 Score: 146 bits (369), Expect = 1.490e-39 Identity = 72/171 (42.11%), Postives = 111/171 (64.91%), Query Frame = 1
Query: 4 ISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQGIAKAGAVIT 516
++ W+ A+ Q+LWC +FRPWA+ SG LWLPA LL T VALGG H++L +A + ++++L+Y+ V++PL+LHFGWI+ A+LV+ NGY A++ S +K + S+VA V + R +P Y VV+WAL AV GW +L G+V +++ G+A G+ I+
Sbjct: 135 LTVWWIPAVACQSLWCSAFRPWAKKSGFLWLPAALLTLTAVALGGAHKVLFDALHSEEVSMLEYIIVNIPLTLHFGWITAASLVSWNGYLASVTA-SISIKSLASSASIVAGVIAAALVGWNRIEPFYPLVVSWALAAVADKKGWSQLEGKVPGPILKRLSGLASLGSGIS 304
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: A0A4D9D883_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D883_9STRA) HSP 1 Score: 132 bits (331), Expect = 3.340e-33 Identity = 72/139 (51.80%), Postives = 88/139 (63.31%), Query Frame = 1
Query: 4 ISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAV 420
++P A A Q+LWC +FRPW + ++P+ LL T V L VH +LREA M YL VH+PLSLHFGWI+CATLVNLNG+FA L KLGLAL S+ AV LG + L DP+ A VVAWAL+AV
Sbjct: 194 LAPPLAQAFAAQSLWCVAFRPWVGR--MQFVPSALLAMTAVGLSRVHTVLREAVAAGAMRPWDYLIVHLPLSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPVIALVVAWALYAV 330
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: A4S135_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S135_OSTLU) HSP 1 Score: 120 bits (300), Expect = 6.210e-30 Identity = 68/144 (47.22%), Postives = 83/144 (57.64%), Query Frame = 1
Query: 4 ISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAG 435
++P +A A FQALWC +FRPWA+ W+ + LL VALG HR LR A S + Y HVPLS+HFGWISCA LVNLN + A + +L A S A LG A+ L DP+YA V+AWAL AV S G
Sbjct: 77 VAPSWALACAFQALWCAAFRPWAKAPRHFWVSSALLVAEAVALGSAHRALRAA--ASAASKAWYWTTHVPLSMHFGWISCAALVNLNSHVA--KTCAPDTQLATAFLSAFGAGGLGAAVTLTTGDPVYALVIAWALTAVASDGG 216
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: A0A7S0WI04_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WI04_9CHLO) HSP 1 Score: 119 bits (298), Expect = 7.690e-29 Identity = 67/178 (37.64%), Postives = 107/178 (60.11%), Query Frame = 1
Query: 1 DISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILR-EAWFTSDMTVL-QYLAVHVPLSLHFGWISCATLVNLNGYFATINK---LSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQGIAKAGAVITA 519
D+SPW+ A ++Q+LWC +FR WAR SG+ W+ A LL T +AL G ++ + T T + Q + +PLSLHFGW++ A+LVN N +FA + + +S R ++ LA S+ A +G +A++R D +Y+ +AWAL A+ + G +G VE ++ + G A GA++ A
Sbjct: 153 DVSPWWVAANIYQSLWCAAFRDWARPSGVFWISAALLTATAIALAGAEAVVTGPSVGTGSWTAVGQRVLAQMPLSLHFGWVTAASLVNWNSFFAVLYRDAHISLRTQIWLAFASLHLAYIVGSIVAVVRMDFLYSLTLAWALTAIKTDKG-RRAQGLVEQKVLDSLSGTAGFGAMLCA 329
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: A0A7S3UZ57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZ57_HETAK) HSP 1 Score: 108 bits (269), Expect = 2.820e-26 Identity = 64/144 (44.44%), Postives = 77/144 (53.47%), Query Frame = 1
Query: 88 LWLPALLLGGTGVALGGVH-----RILREAWFTSDMTVLQYLAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQGIAKAG 504
LW PA LL T AL G H L+ A + Y ++PLSLHFGWI+ ATLVN NG A + + K +A SV AVA G A+A LR DP+Y+ VVAWAL AV GW LRG V L+ G A+ G
Sbjct: 3 LWAPAALLAATAAALAGAHGAVRAHFLQGAAAPGGSSWTDYCLCNLPLSLHFGWITAATLVNANGAVANDTRRTVVTKSLVARASVAVAVAAGAAVAWLRRDPVYSLVVAWALAAVADEQGWGRLRGEVPDALLEGYVGFARLG 146
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: A0A7S0H0W2_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0H0W2_MICPS) HSP 1 Score: 109 bits (272), Expect = 4.020e-25 Identity = 68/180 (37.78%), Postives = 96/180 (53.33%), Query Frame = 1
Query: 4 ISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHR--ILREAWFTSDMTVLQYLAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQGIAKAGAVITAGAACTL 537
++P++A A QALWC +FRPWAR WLP LL VALGG HR +L + +T YL H+P+++HFGWI+ A +V+ N FA + + ++ LA S A A V ++ DP+ + VVAWAL AV S G + G + +R+ G A A + A A L
Sbjct: 150 VAPYWAMACGLQALWCAAFRPWARKPRHFWLPGALLALEAVALGGAHRAMVLVSGLPGNALTKNAYLCGHLPIAMHFGWITAAAVVSANS-FAAVAAWPKQTRVSLAFKSTWLAAAAAVYVSATSNDPVPSFVVAWALAAVASDGGESDA-GEINKEALRSLAGAAATAAKLLAAFALAL 327
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: F0YJX7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJX7_AURAN) HSP 1 Score: 109 bits (273), Expect = 8.560e-25 Identity = 73/178 (41.01%), Postives = 89/178 (50.00%), Query Frame = 1
Query: 7 SPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILR--EAWFTSDMTVLQY-LAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQGIAKAGAVITAGAAC 531
+PW AG + Q WC FRP G LW+P+ L T LG H L+ + + + L+ L V PLSLHF W++CATLVN+N Y A + RVK ALGSV A A + DP+Y VVAWAL AV + G RG V I G AKA AV AC
Sbjct: 216 APWCAGTLC-QVAWCGLFRPSVCGPGALWIPSAALAATAFFLGKAHAALQGLDLYAAGPLRGLRNDLLVRWPLSLHFAWVTCATLVNINKYLA-LRGADLRVKEAGALGSVAVAAAAAAYVLRTTGDPLYGFVVAWALAAVAADGGRQAARGLVPDAPIDRVVGAAKAAAVAVGAVAC 391 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13043.2499.1 >prot_Ecto-sp13_S_contig13043.2499.1 ID=prot_Ecto-sp13_S_contig13043.2499.1|Name=mRNA_Ecto-sp13_S_contig13043.2499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=192bp MLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDback to top mRNA from alignment at Ecto-sp13_S_contig13043:2123..4855- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13043.2499.1 ID=mRNA_Ecto-sp13_S_contig13043.2499.1|Name=mRNA_Ecto-sp13_S_contig13043.2499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2733bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13043:2123..4855- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13043:2123..4855- >mRNA_Ecto-sp13_S_contig13043.2499.1 ID=mRNA_Ecto-sp13_S_contig13043.2499.1|Name=mRNA_Ecto-sp13_S_contig13043.2499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13043:2123..4855- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |