mRNA_Ecto-sp13_S_contig13043.2499.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13043.2499.1
Unique NamemRNA_Ecto-sp13_S_contig13043.2499.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: D8LCC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCC2_ECTSI)

HSP 1 Score: 394 bits (1011), Expect = 7.100e-133
Identity = 195/200 (97.50%), Postives = 197/200 (98.50%), Query Frame = 1
Query:    1 DISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQGIAKAGAVITAGAACTLVGLSLKDLVLGARGGDYDEDY 600
            DISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLH GWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAI LLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQG+AKAGAVITA AACTLVGLSLKDLV+GARGGDYDEDY
Sbjct:  387 DISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLHLGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAITLLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQGVAKAGAVITASAACTLVGLSLKDLVIGARGGDYDEDY 586          
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: D7FS55_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS55_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 6.080e-50
Identity = 82/151 (54.30%), Postives = 104/151 (68.87%), Query Frame = 1
Query:    4 ISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAGWDELRGR 456
            +SPW + A L Q+ WC SFR WARDSGLLW PA LLGGT   LGG H ++R A    +M+ LQY  VH+P+SLHFGW+SCATLVN N Y + +   S++ KL  +L S+ +AV L VA+     DP+YA VVAWAL AV S  GW +++GR
Sbjct:  131 LSPWLSSAFLVQSCWCLSFREWARDSGLLWFPAALLGGTAACLGGAHHVVRGALAAGEMSNLQYGLVHLPVSLHFGWVSCATLVNFNNYISLL-PFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKGWAKMKGR 280          
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: A0A835Z9R9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9R9_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.460e-47
Identity = 89/188 (47.34%), Postives = 122/188 (64.89%), Query Frame = 1
Query:    1 DISPWFAGAMLFQALWCFSFRPWARDSGL--LWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQGIAKAGA-VITAGAACTLVGLSLK 555
            ++SP+F+GAML Q LWC +FRPWAR +GL   W+PALLLG    ALGG H IL +A   S+++ L Y    VPL+LHFGW++ A LVN NG+ A     S+ VK   A+ S+  AV +G A+   R DPIYAAV+AWAL A+   A W +LRG+V+  +++ Q+  AK G+  + A AA  L   +L+
Sbjct:  114 ELSPYFSGAMLLQTLWCGAFRPWARAAGLNLQWIPALLLGLGAAALGGAHGILVQALEDSELSPLSYALAFVPLALHFGWLTAAALVNANGFVAAAAPRSHAVKASAAIASIYLAVLVGAAVTFARRDPIYAAVIAWALAAIADEAAWGKLRGQVDETVLQIQRLTAKGGSRAMLAVAAAPLAAQALR 301          
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: A0A7S2UXB1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXB1_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.490e-39
Identity = 72/171 (42.11%), Postives = 111/171 (64.91%), Query Frame = 1
Query:    4 ISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQGIAKAGAVIT 516
            ++ W+  A+  Q+LWC +FRPWA+ SG LWLPA LL  T VALGG H++L +A  + ++++L+Y+ V++PL+LHFGWI+ A+LV+ NGY A++   S  +K   +  S+VA V     +   R +P Y  VV+WAL AV    GW +L G+V   +++   G+A  G+ I+
Sbjct:  135 LTVWWIPAVACQSLWCSAFRPWAKKSGFLWLPAALLTLTAVALGGAHKVLFDALHSEEVSMLEYIIVNIPLTLHFGWITAASLVSWNGYLASVTA-SISIKSLASSASIVAGVIAAALVGWNRIEPFYPLVVSWALAAVADKKGWSQLEGKVPGPILKRLSGLASLGSGIS 304          
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: A0A4D9D883_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D883_9STRA)

HSP 1 Score: 132 bits (331), Expect = 3.340e-33
Identity = 72/139 (51.80%), Postives = 88/139 (63.31%), Query Frame = 1
Query:    4 ISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAV 420
            ++P  A A   Q+LWC +FRPW     + ++P+ LL  T V L  VH +LREA     M    YL VH+PLSLHFGWI+CATLVNLNG+FA    L    KLGLAL S+  AV LG  + L   DP+ A VVAWAL+AV
Sbjct:  194 LAPPLAQAFAAQSLWCVAFRPWVGR--MQFVPSALLAMTAVGLSRVHTVLREAVAAGAMRPWDYLIVHLPLSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPVIALVVAWALYAV 330          
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: A4S135_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S135_OSTLU)

HSP 1 Score: 120 bits (300), Expect = 6.210e-30
Identity = 68/144 (47.22%), Postives = 83/144 (57.64%), Query Frame = 1
Query:    4 ISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAG 435
            ++P +A A  FQALWC +FRPWA+     W+ + LL    VALG  HR LR A   S  +   Y   HVPLS+HFGWISCA LVNLN + A     +   +L  A  S   A  LG A+ L   DP+YA V+AWAL AV S  G
Sbjct:   77 VAPSWALACAFQALWCAAFRPWAKAPRHFWVSSALLVAEAVALGSAHRALRAA--ASAASKAWYWTTHVPLSMHFGWISCAALVNLNSHVA--KTCAPDTQLATAFLSAFGAGGLGAAVTLTTGDPVYALVIAWALTAVASDGG 216          
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: A0A7S0WI04_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WI04_9CHLO)

HSP 1 Score: 119 bits (298), Expect = 7.690e-29
Identity = 67/178 (37.64%), Postives = 107/178 (60.11%), Query Frame = 1
Query:    1 DISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILR-EAWFTSDMTVL-QYLAVHVPLSLHFGWISCATLVNLNGYFATINK---LSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQGIAKAGAVITA 519
            D+SPW+  A ++Q+LWC +FR WAR SG+ W+ A LL  T +AL G   ++   +  T   T + Q +   +PLSLHFGW++ A+LVN N +FA + +   +S R ++ LA  S+  A  +G  +A++R D +Y+  +AWAL A+ +  G    +G VE  ++ +  G A  GA++ A
Sbjct:  153 DVSPWWVAANIYQSLWCAAFRDWARPSGVFWISAALLTATAIALAGAEAVVTGPSVGTGSWTAVGQRVLAQMPLSLHFGWVTAASLVNWNSFFAVLYRDAHISLRTQIWLAFASLHLAYIVGSIVAVVRMDFLYSLTLAWALTAIKTDKG-RRAQGLVEQKVLDSLSGTAGFGAMLCA 329          
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: A0A7S3UZ57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZ57_HETAK)

HSP 1 Score: 108 bits (269), Expect = 2.820e-26
Identity = 64/144 (44.44%), Postives = 77/144 (53.47%), Query Frame = 1
Query:   88 LWLPALLLGGTGVALGGVH-----RILREAWFTSDMTVLQYLAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQGIAKAG 504
            LW PA LL  T  AL G H       L+ A      +   Y   ++PLSLHFGWI+ ATLVN NG  A   + +   K  +A  SV  AVA G A+A LR DP+Y+ VVAWAL AV    GW  LRG V   L+    G A+ G
Sbjct:    3 LWAPAALLAATAAALAGAHGAVRAHFLQGAAAPGGSSWTDYCLCNLPLSLHFGWITAATLVNANGAVANDTRRTVVTKSLVARASVAVAVAAGAAVAWLRRDPVYSLVVAWALAAVADEQGWGRLRGEVPDALLEGYVGFARLG 146          
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: A0A7S0H0W2_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0H0W2_MICPS)

HSP 1 Score: 109 bits (272), Expect = 4.020e-25
Identity = 68/180 (37.78%), Postives = 96/180 (53.33%), Query Frame = 1
Query:    4 ISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHR--ILREAWFTSDMTVLQYLAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQGIAKAGAVITAGAACTL 537
            ++P++A A   QALWC +FRPWAR     WLP  LL    VALGG HR  +L      + +T   YL  H+P+++HFGWI+ A +V+ N  FA +     + ++ LA  S   A A  V ++    DP+ + VVAWAL AV S  G  +  G +    +R+  G A   A + A  A  L
Sbjct:  150 VAPYWAMACGLQALWCAAFRPWARKPRHFWLPGALLALEAVALGGAHRAMVLVSGLPGNALTKNAYLCGHLPIAMHFGWITAAAVVSANS-FAAVAAWPKQTRVSLAFKSTWLAAAAAVYVSATSNDPVPSFVVAWALAAVASDGGESDA-GEINKEALRSLAGAAATAAKLLAAFALAL 327          
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Match: F0YJX7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJX7_AURAN)

HSP 1 Score: 109 bits (273), Expect = 8.560e-25
Identity = 73/178 (41.01%), Postives = 89/178 (50.00%), Query Frame = 1
Query:    7 SPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILR--EAWFTSDMTVLQY-LAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIRTQQGIAKAGAVITAGAAC 531
            +PW AG +  Q  WC  FRP     G LW+P+  L  T   LG  H  L+  + +    +  L+  L V  PLSLHF W++CATLVN+N Y A +     RVK   ALGSV  A A    +     DP+Y  VVAWAL AV +  G    RG V    I    G AKA AV     AC
Sbjct:  216 APWCAGTLC-QVAWCGLFRPSVCGPGALWIPSAALAATAFFLGKAHAALQGLDLYAAGPLRGLRNDLLVRWPLSLHFAWVTCATLVNINKYLA-LRGADLRVKEAGALGSVAVAAAAAAYVLRTTGDPLYGFVVAWALAAVAADGGRQAARGLVPDAPIDRVVGAAKAAAVAVGAVAC 391          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13043.2499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCC2_ECTSI7.100e-13397.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FS55_ECTSI6.080e-5054.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9R9_9STRA1.460e-4747.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UXB1_9STRA1.490e-3942.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D883_9STRA3.340e-3351.80Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A4S135_OSTLU6.210e-3047.22Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
A0A7S0WI04_9CHLO7.690e-2937.64Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S3UZ57_HETAK2.820e-2644.44Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0H0W2_MICPS4.020e-2537.78Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
F0YJX7_AURAN8.560e-2541.01Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13043contigEcto-sp13_S_contig13043:2123..4855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score373.6
Seed ortholog evalue5.4e-101
Seed eggNOG ortholog2880.D8LCC2
Model size603
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG OGs2CRKW@1,2S47J@2759
Cds size576
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462698.9899786-CDS-Ecto-sp13_S_contig13043:2122..22751681462698.9899786-CDS-Ecto-sp13_S_contig13043:2122..2275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13043 2123..2275 -
1681462699.0018618-CDS-Ecto-sp13_S_contig13043:3115..33471681462699.0018618-CDS-Ecto-sp13_S_contig13043:3115..3347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13043 3116..3347 -
1681462699.012803-CDS-Ecto-sp13_S_contig13043:3992..41711681462699.012803-CDS-Ecto-sp13_S_contig13043:3992..4171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13043 3993..4171 -
1681462699.022604-CDS-Ecto-sp13_S_contig13043:4816..48281681462699.022604-CDS-Ecto-sp13_S_contig13043:4816..4828Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13043 4817..4828 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462699.031952-UTR-Ecto-sp13_S_contig13043:4828..48551681462699.031952-UTR-Ecto-sp13_S_contig13043:4828..4855Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13043 4829..4855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13043.2499.1prot_Ecto-sp13_S_contig13043.2499.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13043 2123..4828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13043.2499.1

>prot_Ecto-sp13_S_contig13043.2499.1 ID=prot_Ecto-sp13_S_contig13043.2499.1|Name=mRNA_Ecto-sp13_S_contig13043.2499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=192bp
MLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSD
MTVLQYLAVHVPLSLHFGWISCATLVNLNGYFATINKLSNRVKLGLALGS
VVAAVALGVAIALLREDPIYAAVVAWALWAVGSPAGWDELRGRVEPGLIR
TQQGIAKAGAVITAGAACTLVGLSLKDLVLGARGGDYDEDY*
back to top

mRNA from alignment at Ecto-sp13_S_contig13043:2123..4855-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13043.2499.1 ID=mRNA_Ecto-sp13_S_contig13043.2499.1|Name=mRNA_Ecto-sp13_S_contig13043.2499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2733bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13043:2123..4855- (Ectocarpus species13 EcNAP12_S_4_19m)
GACATCAGCCCTTGGTTCGCTGGCGCCATGCTCTTCCAGGTGAAAAGTCG CAACCGTTAACGGTTCAAGACACACGAAGAATATAATAGATAGCGAAAGG AAACCCGCATCTCCTTTGTGTCGCCTGTGTAGTATGTAGAAACTCGCAGC AGCACAGCAGAAGCAGCAGCAGCAGTGCAGGGAGGCAACCGTGAACCTCA TGTTGTTATTTTTATTTTCCTTTGCGAGGGAGACCCTTTTATTTTGTTGT AGCCCGCGCCCCCCCAATCAACCGCCTGTCCATGCCGCATTCCAGACACT TTCTTCAAGTTTGGCGTTTAATACGCGAGACGGAAAACCACACACACACA GACTGCCGTCTTTTCATTGGTCATCCGGTTGGTGCGGTCGATGCTAGTAA TAAAGCACACACACACACGCACGCAACTTTTTGCAAAATCCGCCTCCTTG CAATGCTCTGCCCGTTTACGCCCTCCTCTCCCACTTGGTGTTGTGCTACA GCTTGGTGCGGTGAATGCCCGGCGTGCTATCTCCGTCCCGGCTTTGTAGG AATTCGAGGTCAACGTTCCAACGACTACGGCGTGCACGGCCATGAGTACC TCCCCCGTTTGCCCCAAACCCGTTACTCCACCCCGTTTGCACCCCATTTG CCTCCAACCCGTTATCCAAACGCCGACGGCTCAGGCTCTCTGGTGCTTCT CCTTCCGACCGTGGGCGAGGGACAGCGGGCTGCTCTGGCTACCGGCGCTG CTGCTGGGGGGCACGGGAGTCGCCCTCGGCGGCGTGCACCGCATCCTTAG AGAGGCGTGGTTCACCAGCGACATGACCGTCCTCCAGTACCTCGCGGTCC ACGTCCCCCTCAGGTGTATGTATGTAGTGGTAGGTCGGCCATGTTTGTGT GTCCCCGTGCCGAGTCTTGTGTGTAATATGTCTGCGTCTGTCTGCGTGTG TATTTCGCTGTGAAAATTACCAATCTGTGGCTGTGAGTTTGCGCATCTCT TTTTATCTTCCGTCTTGCGTATGCAGCCGCACGTGTCTTTTCGCCTACTT TTTGGCCATGTGTCTGTGTGTCTGGCTTACGGTTGTCAAGTTTCTGACCA GGATGAACCGCCGCAGCCAGTTGTGATTAACGAATATTGATTACGAGTAG CTCTCAGCAGGGAAACGTCATTGTCAGTCGGCTACAAGGTCCATGTGTCT CTTGATATGTCTGTACCATGTCTTTCAAGGGTATCTTATTTTATGTGCGT TTATCGATTATATCTCCTTATGCCTCATCCAGGCATGTAACCGTTATTTT CTCTCGCCGGTCTGTCTGTATCTGTCTCAGTCCACTTGTGACGAGAATCA GTACTGTCAGTGCTGTTTGTCGTCAAACGACGGGTTTGCTGCCGTCGAGG CCAGTTACAGCAGAAGCAGCACTGCTTTTCTATCAGCAGCTGTCCTTCGT TCAATGATGACACTCAACCCCCCCGCCTCCGCACGCTTTCTACACCGACG TGCGTCAGCCTCCACTTCGGCTGGATATCATGCGCCACGTTGGTAAACCT GAACGGCTACTTCGCCACGATAAACAAGCTGTCGAACCGAGTCAAGCTGG GCTTGGCTCTGGGCTCCGTGGTTGCGGCGGTGGCGCTGGGGGTCGCGATA GCCCTCCTCCGGGAGGACCCCATCTACGCGGCCGTCGTCGCGTGGGCTCT CTGGGCTGTGGGAAGCCCTGCAGGATGGGACGAGCTCCGGGTGGGTACTT TATTTGTTCGTTGATTGCTCGTTGTTTGGTTGACGATACAGTTATGATAT TTTCTTGGCCGCGTGTGTATGTGTTTTGGATTGGCACCGACCGCGCTACC CGGTTGACCAATGAACAATACTTCCTTCTTGCTGCGACTGAAAACAGAGA ATTCTTCTGAAGGCCAAGCTACTCTCCGGATTTATAGCCTTTTTTTTTGT TCGTTCACATGTGTTTGTGAACTGCACCCATTCGCGTTGTCATGGTGCGT TCAAACGCGGACAAGTTTATCTATCTGTGTGTCGCCCAATCGAGAAACAC CCTCTCTTTATCTCTCTAGCGAATCAGAGTACCTTCAAGGGAGCGGTGGT GTAACCGTCCGCCAAGGGAGGGCCGTTTTCTCTCGTGACGTTCGGCGAGA AGTGCCAAGCGTGCCCGAGGGTACTCACACAGTCTAGGGTCAAGATAGGG TGGAGGGTGAAGTGATCTCGCGCGCCTCACTCCCCGGAGTCAAGATATCA TCGGACTGCTCGCAGCATTCGGCTGATCATTCTTGGCAAAAATTCCTCGG AATATCATCCGTCAGGTCGCTAGATATCTACTGCTGCTGCTGTCTGTAAA AAACACTAGGGAGATGTATTCTGATTTTTTTTATCCGGGCTTTCACCTGG TATTTATTTTTTTCTTTCTCCGCCCGTGGGCTAACCCCGAGACTAAAGTA ACCCGTCTGTCGTGACCCTGTACACCCAACGTCTACGTAACCTGATTCGT CTGTCTCATCCCCTCGTCTCTCGCCCTGCTTGTTTTTTCACGGCGACTCG CTCCGTGCCCGAAAAAAAAAATCAAAACAGGGCCGTGTGGAGCCGGGCTT GATCCGGACACAGCAAGGCATCGCGAAGGCCGGTGCCGTCATCACCGCCG GCGCTGCCTGTACGCTCGTGGGGCTGTCCCTCAAGGACCTTGTCCTCGGC GCGAGAGGGGGAGACTACGACGAGGACTACTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13043:2123..4855-

>mRNA_Ecto-sp13_S_contig13043.2499.1 ID=mRNA_Ecto-sp13_S_contig13043.2499.1|Name=mRNA_Ecto-sp13_S_contig13043.2499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13043:2123..4855- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCTTCCAGGCTCTCTGGTGCTTCTCCTTCCGACCGTGGGCGAGGGA
CAGCGGGCTGCTCTGGCTACCGGCGCTGCTGCTGGGGGGCACGGGAGTCG
CCCTCGGCGGCGTGCACCGCATCCTTAGAGAGGCGTGGTTCACCAGCGAC
ATGACCGTCCTCCAGTACCTCGCGGTCCACGTCCCCCTCAGCCTCCACTT
CGGCTGGATATCATGCGCCACGTTGGTAAACCTGAACGGCTACTTCGCCA
CGATAAACAAGCTGTCGAACCGAGTCAAGCTGGGCTTGGCTCTGGGCTCC
GTGGTTGCGGCGGTGGCGCTGGGGGTCGCGATAGCCCTCCTCCGGGAGGA
CCCCATCTACGCGGCCGTCGTCGCGTGGGCTCTCTGGGCTGTGGGAAGCC
CTGCAGGATGGGACGAGCTCCGGGGCCGTGTGGAGCCGGGCTTGATCCGG
ACACAGCAAGGCATCGCGAAGGCCGGTGCCGTCATCACCGCCGGCGCTGC
CTGTACGCTCGTGGGGCTGTCCCTCAAGGACCTTGTCCTCGGCGCGAGAG
GGGGAGACTACGACGAGGACTACTAA
back to top