mRNA_Ecto-sp13_S_contig13042.2498.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI) HSP 1 Score: 234 bits (596), Expect = 5.220e-76 Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 1
Query: 1 SPRSFKVKSEVVVAQPADARSELENGRFIRNRIVVVERGDVPIV---LAAQRAGALGVIVADDGRCGSSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERLTAAAGAAAAHAESKAWT 375
SPRSFKVKSEVVVAQPADARSELENGRF+RNRIVVV+RGD+PIV LAAQRAGALGVIVADDGRCG SFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERLTAAAGAAAAHAES AWT
Sbjct: 76 SPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVQRGDIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERLTAAAGAAAAHAESMAWT 203
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: A0A836CBI4_9STRA (PA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI4_9STRA) HSP 1 Score: 108 bits (269), Expect = 4.900e-27 Identity = 60/117 (51.28%), Postives = 76/117 (64.96%), Query Frame = 1
Query: 1 SPRSFKVKSEVVVAQPADARS-ELENGRFIRNRIVVVERGDVPIV---LAAQRAGALGVIVADDGRC--GSSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERLTAA 333
SPR+ V +E++ A P DA + EL N F+R RI +V RG VP+V +AAQRA AL V++ADDG C F Q C+ GS PP+GWA D PW +VR+P VLML+E A L AA
Sbjct: 82 SPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAAVLLAA 198
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: A0A8J2X4D2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4D2_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 2.380e-21 Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 1
Query: 1 SPRSFKVKSEVVVAQPADARSELENGRFIRNRIVVVERGDVPIV---LAAQRAGALGVIVADDGRCGSSFGQLCVYGSDPPEG--WAALDMPRPWLDVRVPVVLMLREDA 315
SPR K +E+V A P DA S +N +R R+V+V+RG P+ L AQRAGALGV++AD+G+C ++ Q CV G+D G WA LD+ RPW V +PVVL+L + A
Sbjct: 621 SPRGHKAVAELVAADPLDACSTHKNAAPLRGRVVLVKRGQCPLATKALLAQRAGALGVVIADNGKC-TALDQYCVPGADRSRGEAWARLDLQRPWAGVHIPVVLVLADSA 729
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: A0A7S2WLH8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLH8_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.520e-20 Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = 1
Query: 1 SPRSFKVKSEVVVAQPA-----------DARSELENGRFIRNRIVVVERGDVPIV---LAAQRAGALGVIVADDGRCGSSFGQLCVYGSDPP--EGWAALDMPRPWLDVRVPVVLMLREDAERL 324
SP+++KV +EV+V P R+ L N +++RI ++ERG VP+V AQ AGAL VIV DDG+C + F QLC G+D +G+A LD+ PW +R+PVVLMLR DA++L
Sbjct: 552 SPKAYKVTAEVIVTDPPMGDLSEPNKLPSTRTPLHNAATVQHRIALMERGGVPLVHKAALAQDAGALAVIVTDDGKC-TEFDQLCCPGADKKFGDGFAKLDLAAPWEKIRIPVVLMLRADADKL 674
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: A0A7S3JZQ1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZQ1_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 7.180e-20 Identity = 48/113 (42.48%), Postives = 73/113 (64.60%), Query Frame = 1
Query: 1 SPRSFKVKSEVVVAQPADARSELENGRFIRNRIVVVERGDVPIVLAA---QRAGALGVIVADDGRCGSSFGQLCVYGSDPP--EGWAALDMPRPWLDVRVPVVLMLREDAERL 324
SP V +E++ AQP A + L+ + +R+ + RGDVP V+ A QR GAL +++ADDGRCG S Q CV G++ EG+AALD P+ W + +P+VL+L++DA+ +
Sbjct: 563 SPPQISVAAEIIRAQPILANAPLQKELY--HRVAIANRGDVPFVVKAKHAQRTGALALVIADDGRCGDSLDQYCVPGAERARGEGFAALDNPKQWSSIHIPIVLILKKDADEV 673
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: G5AEH8_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AEH8_PHYSP) HSP 1 Score: 94.0 bits (232), Expect = 7.370e-20 Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 1 SPRSFKVKSEVVVAQPADARSELENGRFIRNRIVVVERGDVPIVLA---AQRAGALGVIVAD-DGRCGSSFGQLCVYGSDPP--EGWAALDMPRPWLDVRVPVVLMLREDAERLTAAAGAA 345
SPR F V +E+V+A P DA L N +R+R+++ RG VP V AQRAGALG+I+AD DG CG F Q CV G+D EG+AA + W + ++P VL+L++ A+ L GAA
Sbjct: 800 SPRLFDVSAELVLADPPDASQPLRNAHAVRDRVLLAVRGGVPFVFKLHFAQRAGALGLIIADADGVCGGGFDQSCVPGADKRRGEGFAAQERHTLWQEAQIPCVLVLQDTAQELLERLGAA 920
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: A0A6A3MUP0_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MUP0_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.380e-19 Identity = 54/121 (44.63%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 1 SPRSFKVKSEVVVAQPADARSELENGRFIRNRIVVVERGDVPIVLA---AQRAGALGVIVAD-DGRCGSSFGQLCVYGSDPP--EGWAALDMPRPWLDVRVPVVLMLREDAERLTAAAGAA 345
SPR F V +E+V+A P DA L N +R+R+++ RG VP V AQRAGALG+I+AD DG CG F Q CV G+D EG+AA + W + ++P VL+L++ A+ L G+A
Sbjct: 877 SPRLFDVSAELVLADPPDASQPLRNAHAVRDRVLLAVRGGVPFVFKLHFAQRAGALGLIIADADGVCGGGFDQSCVPGADKRRGEGFAAQERHALWREAQIPCVLVLKDTAQELLERLGSA 997
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: A0A7S3UWA2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWA2_HETAK) HSP 1 Score: 90.1 bits (222), Expect = 3.760e-19 Identity = 59/113 (52.21%), Postives = 69/113 (61.06%), Query Frame = 1
Query: 1 SPRSFKVKSEVVVAQPADARSELENGRFIRNRIVVVERGD-VPIV---LAAQRAGALGVIVADDGRCGSSFGQLCVYGSDPP---EGWAALDMPRPWLDVRVPVVLMLREDAE 318
SP++F V +E V A P A L N +R R+ +V RG VP+V L AQ AGALGVIV DDGRC +F Q CV G+D E WA D P PW VRVPVVL+L DAE
Sbjct: 183 SPQAFSVTAEAVRADPFLADRPLRNKAVLRKRLALVGRGGGVPLVTKALRAQAAGALGVIVVDDGRC-RAFDQRCVRGADLAARGELWARGDRPGPWRGVRVPVVLVLAGDAE 294
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: A0A7S1XPP5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPP5_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 8.790e-19 Identity = 56/118 (47.46%), Postives = 76/118 (64.41%), Query Frame = 1
Query: 1 SPRSFKVKSEVVVAQPADA-RSELENGR--FIRNRIVVVERGDVPIV---LAAQRAGALGVIVADDGRCGSSFGQLCVYGSDPP----EGWAALDMPRPWLDVRVPVVLMLREDAERL 324
SP SF V++++ +A+PA A R+E G + +R+++VERG P+V L AQ+AGALGVI+ DDGRC F Q CV GSD +G+AA D P W VR+P VL+L +D E L
Sbjct: 740 SPASFSVRAQLAMAEPATACRAEGGAGHPSVVHHRVLLVERGGCPLVQKVLTAQKAGALGVIIVDDGRC-EKFDQHCVPGSDKVLSEGQGFAAQDHPGDWRKVRIPAVLVLADDGEVL 856
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: W2Q4L8_PHYPN (Fibronectin type-III domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2Q4L8_PHYPN) HSP 1 Score: 90.1 bits (222), Expect = 1.650e-18 Identity = 54/120 (45.00%), Postives = 74/120 (61.67%), Query Frame = 1
Query: 1 SPRSFKVKSEVVVAQPADARSELENGRFIRNRIVVVERGDVPIVLA---AQRAGALGVIVAD-DGRCGSSFGQLCVYGSDP--PEGWAALDMPRPWLDVRVPVVLMLREDAERLTAAAGA 342
SPR F V +E+++A P DA L+N +R+R+++ RG VP+V AQRAGALG+I+AD +G C F Q CV GSD EG+AA + W +P VL+L+E A+ L A GA
Sbjct: 849 SPRLFDVSAELILADPPDASRPLKNVHAVRDRVLLAVRGGVPLVFKVHHAQRAGALGLIIADANGHCAGGFDQSCVPGSDKIRGEGFAAQERHVLWDQAHIPCVLVLKEAAQELLARFGA 968 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13042.2498.1 >prot_Ecto-sp13_S_contig13042.2498.1 ID=prot_Ecto-sp13_S_contig13042.2498.1|Name=mRNA_Ecto-sp13_S_contig13042.2498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp SPRSFKVKSEVVVAQPADARSELENGRFIRNRIVVVERGDVPIVLAAQRAback to top mRNA from alignment at Ecto-sp13_S_contig13042:3806..4434+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13042.2498.1 ID=mRNA_Ecto-sp13_S_contig13042.2498.1|Name=mRNA_Ecto-sp13_S_contig13042.2498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=629bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13042:3806..4434+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13042:3806..4434+ >mRNA_Ecto-sp13_S_contig13042.2498.1 ID=mRNA_Ecto-sp13_S_contig13042.2498.1|Name=mRNA_Ecto-sp13_S_contig13042.2498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13042:3806..4434+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |