mRNA_Ecto-sp13_S_contig13042.2498.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13042.2498.1
Unique NamemRNA_Ecto-sp13_S_contig13042.2498.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 5.220e-76
Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 1
Query:    1 SPRSFKVKSEVVVAQPADARSELENGRFIRNRIVVVERGDVPIV---LAAQRAGALGVIVADDGRCGSSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERLTAAAGAAAAHAESKAWT 375
            SPRSFKVKSEVVVAQPADARSELENGRF+RNRIVVV+RGD+PIV   LAAQRAGALGVIVADDGRCG SFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERLTAAAGAAAAHAES AWT
Sbjct:   76 SPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVQRGDIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERLTAAAGAAAAHAESMAWT 203          
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: A0A836CBI4_9STRA (PA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.900e-27
Identity = 60/117 (51.28%), Postives = 76/117 (64.96%), Query Frame = 1
Query:    1 SPRSFKVKSEVVVAQPADARS-ELENGRFIRNRIVVVERGDVPIV---LAAQRAGALGVIVADDGRC--GSSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERLTAA 333
            SPR+  V +E++ A P DA + EL N  F+R RI +V RG VP+V   +AAQRA AL V++ADDG C     F Q C+ GS PP+GWA  D   PW +VR+P VLML+E A  L AA
Sbjct:   82 SPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAAVLLAA 198          
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: A0A8J2X4D2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4D2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.380e-21
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    1 SPRSFKVKSEVVVAQPADARSELENGRFIRNRIVVVERGDVPIV---LAAQRAGALGVIVADDGRCGSSFGQLCVYGSDPPEG--WAALDMPRPWLDVRVPVVLMLREDA 315
            SPR  K  +E+V A P DA S  +N   +R R+V+V+RG  P+    L AQRAGALGV++AD+G+C ++  Q CV G+D   G  WA LD+ RPW  V +PVVL+L + A
Sbjct:  621 SPRGHKAVAELVAADPLDACSTHKNAAPLRGRVVLVKRGQCPLATKALLAQRAGALGVVIADNGKC-TALDQYCVPGADRSRGEAWARLDLQRPWAGVHIPVVLVLADSA 729          
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: A0A7S2WLH8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLH8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.520e-20
Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    1 SPRSFKVKSEVVVAQPA-----------DARSELENGRFIRNRIVVVERGDVPIV---LAAQRAGALGVIVADDGRCGSSFGQLCVYGSDPP--EGWAALDMPRPWLDVRVPVVLMLREDAERL 324
            SP+++KV +EV+V  P              R+ L N   +++RI ++ERG VP+V     AQ AGAL VIV DDG+C + F QLC  G+D    +G+A LD+  PW  +R+PVVLMLR DA++L
Sbjct:  552 SPKAYKVTAEVIVTDPPMGDLSEPNKLPSTRTPLHNAATVQHRIALMERGGVPLVHKAALAQDAGALAVIVTDDGKC-TEFDQLCCPGADKKFGDGFAKLDLAAPWEKIRIPVVLMLRADADKL 674          
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: A0A7S3JZQ1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZQ1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 7.180e-20
Identity = 48/113 (42.48%), Postives = 73/113 (64.60%), Query Frame = 1
Query:    1 SPRSFKVKSEVVVAQPADARSELENGRFIRNRIVVVERGDVPIVLAA---QRAGALGVIVADDGRCGSSFGQLCVYGSDPP--EGWAALDMPRPWLDVRVPVVLMLREDAERL 324
            SP    V +E++ AQP  A + L+   +  +R+ +  RGDVP V+ A   QR GAL +++ADDGRCG S  Q CV G++    EG+AALD P+ W  + +P+VL+L++DA+ +
Sbjct:  563 SPPQISVAAEIIRAQPILANAPLQKELY--HRVAIANRGDVPFVVKAKHAQRTGALALVIADDGRCGDSLDQYCVPGAERARGEGFAALDNPKQWSSIHIPIVLILKKDADEV 673          
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: G5AEH8_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AEH8_PHYSP)

HSP 1 Score: 94.0 bits (232), Expect = 7.370e-20
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 SPRSFKVKSEVVVAQPADARSELENGRFIRNRIVVVERGDVPIVLA---AQRAGALGVIVAD-DGRCGSSFGQLCVYGSDPP--EGWAALDMPRPWLDVRVPVVLMLREDAERLTAAAGAA 345
            SPR F V +E+V+A P DA   L N   +R+R+++  RG VP V     AQRAGALG+I+AD DG CG  F Q CV G+D    EG+AA +    W + ++P VL+L++ A+ L    GAA
Sbjct:  800 SPRLFDVSAELVLADPPDASQPLRNAHAVRDRVLLAVRGGVPFVFKLHFAQRAGALGLIIADADGVCGGGFDQSCVPGADKRRGEGFAAQERHTLWQEAQIPCVLVLQDTAQELLERLGAA 920          
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: A0A6A3MUP0_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MUP0_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.380e-19
Identity = 54/121 (44.63%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 SPRSFKVKSEVVVAQPADARSELENGRFIRNRIVVVERGDVPIVLA---AQRAGALGVIVAD-DGRCGSSFGQLCVYGSDPP--EGWAALDMPRPWLDVRVPVVLMLREDAERLTAAAGAA 345
            SPR F V +E+V+A P DA   L N   +R+R+++  RG VP V     AQRAGALG+I+AD DG CG  F Q CV G+D    EG+AA +    W + ++P VL+L++ A+ L    G+A
Sbjct:  877 SPRLFDVSAELVLADPPDASQPLRNAHAVRDRVLLAVRGGVPFVFKLHFAQRAGALGLIIADADGVCGGGFDQSCVPGADKRRGEGFAAQERHALWREAQIPCVLVLKDTAQELLERLGSA 997          
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: A0A7S3UWA2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWA2_HETAK)

HSP 1 Score: 90.1 bits (222), Expect = 3.760e-19
Identity = 59/113 (52.21%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    1 SPRSFKVKSEVVVAQPADARSELENGRFIRNRIVVVERGD-VPIV---LAAQRAGALGVIVADDGRCGSSFGQLCVYGSDPP---EGWAALDMPRPWLDVRVPVVLMLREDAE 318
            SP++F V +E V A P  A   L N   +R R+ +V RG  VP+V   L AQ AGALGVIV DDGRC  +F Q CV G+D     E WA  D P PW  VRVPVVL+L  DAE
Sbjct:  183 SPQAFSVTAEAVRADPFLADRPLRNKAVLRKRLALVGRGGGVPLVTKALRAQAAGALGVIVVDDGRC-RAFDQRCVRGADLAARGELWARGDRPGPWRGVRVPVVLVLAGDAE 294          
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: A0A7S1XPP5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPP5_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.790e-19
Identity = 56/118 (47.46%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    1 SPRSFKVKSEVVVAQPADA-RSELENGR--FIRNRIVVVERGDVPIV---LAAQRAGALGVIVADDGRCGSSFGQLCVYGSDPP----EGWAALDMPRPWLDVRVPVVLMLREDAERL 324
            SP SF V++++ +A+PA A R+E   G    + +R+++VERG  P+V   L AQ+AGALGVI+ DDGRC   F Q CV GSD      +G+AA D P  W  VR+P VL+L +D E L
Sbjct:  740 SPASFSVRAQLAMAEPATACRAEGGAGHPSVVHHRVLLVERGGCPLVQKVLTAQKAGALGVIIVDDGRC-EKFDQHCVPGSDKVLSEGQGFAAQDHPGDWRKVRIPAVLVLADDGEVL 856          
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Match: W2Q4L8_PHYPN (Fibronectin type-III domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2Q4L8_PHYPN)

HSP 1 Score: 90.1 bits (222), Expect = 1.650e-18
Identity = 54/120 (45.00%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 SPRSFKVKSEVVVAQPADARSELENGRFIRNRIVVVERGDVPIVLA---AQRAGALGVIVAD-DGRCGSSFGQLCVYGSDP--PEGWAALDMPRPWLDVRVPVVLMLREDAERLTAAAGA 342
            SPR F V +E+++A P DA   L+N   +R+R+++  RG VP+V     AQRAGALG+I+AD +G C   F Q CV GSD    EG+AA +    W    +P VL+L+E A+ L A  GA
Sbjct:  849 SPRLFDVSAELILADPPDASRPLKNVHAVRDRVLLAVRGGVPLVFKVHHAQRAGALGLIIADANGHCAGGFDQSCVPGSDKIRGEGFAAQERHVLWDQAHIPCVLVLKEAAQELLARFGA 968          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13042.2498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI37_ECTSI5.220e-7693.75PA domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A836CBI4_9STRA4.900e-2751.28PA domain-containing protein (Fragment) n=1 Tax=Tr... [more]
A0A8J2X4D2_9STRA2.380e-2148.18Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2WLH8_9STRA1.520e-2044.35Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3JZQ1_9STRA7.180e-2042.48Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
G5AEH8_PHYSP7.370e-2045.45Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A6A3MUP0_9STRA1.380e-1944.63Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
A0A7S3UWA2_HETAK3.760e-1952.21Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S1XPP5_9STRA8.790e-1947.46Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W2Q4L8_PHYPN1.650e-1845.00Fibronectin type-III domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13042contigEcto-sp13_S_contig13042:3806..4434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score236.1
Seed ortholog evalue8.8e-60
Seed eggNOG ortholog2880.D8LI37
Model size375
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs29K29@1,2RTB6@2759
Cds size375
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462698.9479544-CDS-Ecto-sp13_S_contig13042:3805..39341681462698.9479544-CDS-Ecto-sp13_S_contig13042:3805..3934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13042 3806..3934 +
1681462698.9586046-CDS-Ecto-sp13_S_contig13042:4188..44341681462698.9586046-CDS-Ecto-sp13_S_contig13042:4188..4434Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13042 4189..4434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13042.2498.1prot_Ecto-sp13_S_contig13042.2498.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13042 3806..4434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13042.2498.1

>prot_Ecto-sp13_S_contig13042.2498.1 ID=prot_Ecto-sp13_S_contig13042.2498.1|Name=mRNA_Ecto-sp13_S_contig13042.2498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
SPRSFKVKSEVVVAQPADARSELENGRFIRNRIVVVERGDVPIVLAAQRA
GALGVIVADDGRCGSSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLM
LREDAERLTAAAGAAAAHAESKAWT
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mRNA from alignment at Ecto-sp13_S_contig13042:3806..4434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13042.2498.1 ID=mRNA_Ecto-sp13_S_contig13042.2498.1|Name=mRNA_Ecto-sp13_S_contig13042.2498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=629bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13042:3806..4434+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTCCCCGATCCTTCAAGGTAAAATCCGAGGTAGTCGTGGCGCAGCCTGC TGACGCGCGGAGCGAACTGGAGAACGGACGCTTCATTCGTAACCGCATTG TCGTCGTGGAGCGGGGGGACGTCCCGATCGTACACAAGGCAAGAACACAC CCACCCTTCAGAAGAACGGAACGTTTTTCATCAGCTTGAACGGACCATCT GTCTTGCACGTCAACGCTGTTAGTAGATGACTGCCCGCATCTTCTTCTCA AACGAAAATGATGCAGAATACAACAAAGTTCCAAATGGCAAGTCGTGTGG TGAAGACATCCTCGCCAAGTCGCCCGCAACAGAACAAAGAAAACAGCTCA AATACACCACACCAACGGCACGCTCCATAACAGGTGCTAGCCGCGCAGCG CGCCGGAGCCCTCGGAGTTATCGTTGCTGACGACGGGAGGTGCGGCAGCA GCTTCGGACAGCTATGCGTGTACGGCAGCGACCCCCCCGAGGGCTGGGCG GCCCTCGACATGCCCCGCCCCTGGCTCGACGTCCGGGTCCCCGTGGTTCT CATGCTCCGCGAGGACGCGGAGAGGTTGACCGCGGCGGCCGGGGCGGCGG CGGCGCACGCCGAGTCCAAGGCGTGGACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13042:3806..4434+

>mRNA_Ecto-sp13_S_contig13042.2498.1 ID=mRNA_Ecto-sp13_S_contig13042.2498.1|Name=mRNA_Ecto-sp13_S_contig13042.2498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13042:3806..4434+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTCCCCGATCCTTCAAGGTAAAATCCGAGGTAGTCGTGGCGCAGCCTGC
TGACGCGCGGAGCGAACTGGAGAACGGACGCTTCATTCGTAACCGCATTG
TCGTCGTGGAGCGGGGGGACGTCCCGATCGTGCTAGCCGCGCAGCGCGCC
GGAGCCCTCGGAGTTATCGTTGCTGACGACGGGAGGTGCGGCAGCAGCTT
CGGACAGCTATGCGTGTACGGCAGCGACCCCCCCGAGGGCTGGGCGGCCC
TCGACATGCCCCGCCCCTGGCTCGACGTCCGGGTCCCCGTGGTTCTCATG
CTCCGCGAGGACGCGGAGAGGTTGACCGCGGCGGCCGGGGCGGCGGCGGC
GCACGCCGAGTCCAAGGCGTGGACC
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