prot_Ecto-sp13_S_contig1304.2496.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1304.2496.1
Unique Nameprot_Ecto-sp13_S_contig1304.2496.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length196
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1304.2496.1 vs. uniprot
Match: D8LCN1_ECTSI (Breast cancer 2 like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN1_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 3.610e-32
Identity = 93/143 (65.03%), Postives = 97/143 (67.83%), Query Frame = 0 
Query:   54 LEKPRGSVETLAEAVDDDDAGEAXXXXXXXXXXXXXXXXXXXXXQTFGRQPQTTTKRSTDVDSLRXXXXXXXXXXXXXXXXXXXPAASGFITGGGRPVHVSAEALLKAKRLLADASGDDIEAAGGVERGDQE-SAAAARKGAP 195
            L KP GS ETLAEAVDDDDAGEA     XXX     XXXX    QT GRQPQT  + S DVD LR                    AASGFITGGGRPVHVSAEALLKAKRLLADASGD+IEA  GVERGDQE +AAAAR+GAP
Sbjct: 2046 LAKPGGSAETLAEAVDDDDAGEASAGENXXXSITNAXXXXATP-QTSGRQPQTMRRSSADVDFLRDEGPAADPRGAAEAPAPPTAAASGFITGGGRPVHVSAEALLKAKRLLADASGDEIEAVAGVERGDQEGAAAAARRGAP 2187
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BLAST of mRNA_Ecto-sp13_S_contig1304.2496.1 vs. uniprot
Match: A0A6H5JH10_9PHAE (BRCA-2_helical domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH10_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.310e-31
Identity = 84/147 (57.14%), Postives = 90/147 (61.22%), Query Frame = 0 
Query:   50 DGGELEKPRGSVETLAEAVDDDDAGEAXXXXXXXXXXXXXXXXXXXXXQTFGRQPQTTTKRSTDVDSLRXXXXXXXXXXXXXXXXXXXPAASGFITGGGRPVHVSAEALLKAKRLLADASGDDIEAAGGVERGDQESAAAARKGAPP 196
            D G L KP GS +TLAEAVDDDDAGE                      QT GRQPQT T+ S DVDS R                    AAS FITGG RPVHVSAEALLKAKRLLADASGD++EAA GVER DQE A+AAR+GAPP
Sbjct: 2290 DCGGLAKPGGSADTLAEAVDDDDAGEESAGENEAGSITDATTAP----QTSGRQPQTMTRSSADVDSSRDEGPAADPRGAAEAPAPPTAAASRFITGGARPVHVSAEALLKAKRLLADASGDEMEAAAGVEREDQEGASAARRGAPP 2432
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1304.2496.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCN1_ECTSI3.610e-3265.03Breast cancer 2 like n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JH10_9PHAE2.310e-3157.14BRCA-2_helical domain-containing protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002093BRCA2 repeatPFAMPF00634BRCA2coord: 139..167
e-value: 1.0E-6
score: 28.3
IPR002093BRCA2 repeatPROSITEPS50138BRCA2_REPEATcoord: 136..170
score: 8.903

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1304contigEcto-sp13_S_contig1304:8892..9479 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1304.2496.1mRNA_Ecto-sp13_S_contig1304.2496.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1304 8892..9481 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1304.2496.1 ID=prot_Ecto-sp13_S_contig1304.2496.1|Name=mRNA_Ecto-sp13_S_contig1304.2496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=196bp
GGTTTVRARVGGGRLGGGGCGGGGGVVGISEEDKETKAPSPATNGGGAGD
GGELEKPRGSVETLAEAVDDDDAGEASAGENEACSCTDSATATTTTPQTF
GRQPQTTTKRSTDVDSLRAEGPAPAPGGAAEAPAPPTPAASGFITGGGRP
VHVSAEALLKAKRLLADASGDDIEAAGGVERGDQESAAAARKGAPP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002093BRCA2_repeat