mRNA_Ecto-sp13_S_contig1304.2496.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig1304.2496.1
Unique Name	mRNA_Ecto-sp13_S_contig1304.2496.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1304.2496.1 vs. uniprot
Match: D8LCN1_ECTSI (Breast cancer 2 like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN1_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 3.610e-32
Identity = 93/143 (65.03%), Postives = 97/143 (67.83%), Query Frame = 1

Query:  160 LEKPRGSVETLAEAVDDDDAGEAXXXXXXXXXXXXXXXXXXXXXQTFGRQPQTTTKRSTDVDSLRXXXXXXXXXXXXXXXXXXXPAASGFITGGGRPVHVSAEALLKAKRLLADASGDDIEAAGGVERGDQE-SAAAARKGAP 585
            L KP GS ETLAEAVDDDDAGEA     XXX     XXXX    QT GRQPQT  + S DVD LR                    AASGFITGGGRPVHVSAEALLKAKRLLADASGD+IEA  GVERGDQE +AAAAR+GAP
Sbjct: 2046 LAKPGGSAETLAEAVDDDDAGEASAGENXXXSITNAXXXXATP-QTSGRQPQTMRRSSADVDFLRDEGPAADPRGAAEAPAPPTAAASGFITGGGRPVHVSAEALLKAKRLLADASGDEIEAVAGVERGDQEGAAAAARRGAP 2187

[Close]

BLAST of mRNA_Ecto-sp13_S_contig1304.2496.1 vs. uniprot
Match: A0A6H5JH10_9PHAE (BRCA-2_helical domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH10_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.310e-31
Identity = 84/147 (57.14%), Postives = 90/147 (61.22%), Query Frame = 1

Query:  148 DGGELEKPRGSVETLAEAVDDDDAGEAXXXXXXXXXXXXXXXXXXXXXQTFGRQPQTTTKRSTDVDSLRXXXXXXXXXXXXXXXXXXXPAASGFITGGGRPVHVSAEALLKAKRLLADASGDDIEAAGGVERGDQESAAAARKGAPP 588
            D G L KP GS +TLAEAVDDDDAGE                      QT GRQPQT T+ S DVDS R                    AAS FITGG RPVHVSAEALLKAKRLLADASGD++EAA GVER DQE A+AAR+GAPP
Sbjct: 2290 DCGGLAKPGGSADTLAEAVDDDDAGEESAGENEAGSITDATTAP----QTSGRQPQTMTRSSADVDSSRDEGPAADPRGAAEAPAPPTAAASRFITGGARPVHVSAEALLKAKRLLADASGDEMEAAAGVEREDQEGASAARRGAPP 2432

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1304.2496.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1304.2496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LCN1_ECTSI	3.610e-32	65.03	Breast cancer 2 like n=1 Tax=Ectocarpus siliculosu...	[more]
A0A6H5JH10_9PHAE	2.310e-31	57.14	BRCA-2_helical domain-containing protein n=1 Tax=E...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1304	contig	Ecto-sp13_S_contig1304:8892..9481 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	137.1
Seed ortholog evalue	8.7e-30
Seed eggNOG ortholog	2880.D8LCN1
Preferred name	BRCA2
Model size	592
KEGG ko	ko:K06236,ko:K08775
KEGG Pathway	ko03440,ko03460,ko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,ko05200,ko05212,ko05224,map03440,map03460,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165,map05200,map05212,map05224
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000075,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000711,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000781,GO:0000784,GO:0000793,GO:0000794,GO:0000795,GO:0000800,GO:0000910,GO:0001556,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0002020,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0004402,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006312,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006978,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007098,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0007568,GO:0007569,GO:0007584,GO:0008022,GO:0008080,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0008283,GO:0008285,GO:0008406,GO:0008585,GO:0008608,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0009994,GO:0010033,GO:0010165,GO:0010212,GO:0010225,GO:0010243,GO:0010332,GO:0010468,GO:0010484,GO:0010485,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010639,GO:0010778,GO:0010948,GO:0012501,GO:0012505,GO:0014070,GO:0015630,GO:0015631,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0023052,GO:0030097,GO:0030141,GO:0030154,GO:0030330,GO:0030879,GO:0031023,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031410,GO:0031619,GO:0031667,GO:0031974,GO:0031981,GO:0031982,GO:0032200,GO:0032355,GO:0032465,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033043,GO:0033260,GO:0033313,GO:0033365,GO:0033554,GO:0033593,GO:0033599,GO:0033600,GO:0033993,GO:0034212,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035264,GO:0035556,GO:0035825,GO:0036211,GO:0040007,GO:0040020,GO:0042127,GO:0042221,GO:0042493,GO:0042592,GO:0042770,GO:0042771,GO:0042772,GO:0042802,GO:0043009,GO:0043015,GO:0043060,GO:0043150,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044786,GO:0045005,GO:0045132,GO:0045137,GO:0045143,GO:0045184,GO:0045786,GO:0045787,GO:0045835,GO:0045893,GO:0045931,GO:0045934,GO:0045935,GO:0046483,GO:0046545,GO:0046660,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048478,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048589,GO:0048599,GO:0048608,GO:0048609,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050000,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051276,GO:0051298,GO:0051301,GO:0051302,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051445,GO:0051447,GO:0051455,GO:0051598,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0060255,GO:0060322,GO:0061458,GO:0061640,GO:0061733,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070198,GO:0070199,GO:0070200,GO:0070727,GO:0071695,GO:0071704,GO:0071840,GO:0071897,GO:0072331,GO:0072332,GO:0072594,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097327,GO:0097708,GO:0098687,GO:0098813,GO:0099086,GO:0099503,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901563,GO:1901564,GO:1901576,GO:1901698,GO:1901700,GO:1902298,GO:1902680,GO:1902969,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1990426,GO:1990505,GO:2000026,GO:2000104,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001141
Exons	1
EggNOG free text desc.	homologous chromosome orientation involved in meiotic metaphase I plate congression
EggNOG OGs	KOG4751@1,KOG4751@2759
Cds size	588
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00536,ko03036,ko03400,ko04121,ko04516

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462698.62174-CDS-Ecto-sp13_S_contig1304:8891..9479	1681462698.62174-CDS-Ecto-sp13_S_contig1304:8891..9479	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1304 8892..9479 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1304.2496.1	prot_Ecto-sp13_S_contig1304.2496.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig1304 8892..9479 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig1304:8892..9481+
coding sequence from alignment at Ecto-sp13_S_contig1304:8892..9481+

protein sequence of mRNA_Ecto-sp13_S_contig1304.2496.1

>prot_Ecto-sp13_S_contig1304.2496.1 ID=prot_Ecto-sp13_S_contig1304.2496.1|Name=mRNA_Ecto-sp13_S_contig1304.2496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=196bp
GGTTTVRARVGGGRLGGGGCGGGGGVVGISEEDKETKAPSPATNGGGAGD
GGELEKPRGSVETLAEAVDDDDAGEASAGENEACSCTDSATATTTTPQTF
GRQPQTTTKRSTDVDSLRAEGPAPAPGGAAEAPAPPTPAASGFITGGGRP
VHVSAEALLKAKRLLADASGDDIEAAGGVERGDQESAAAARKGAPP

mRNA from alignment at Ecto-sp13_S_contig1304:8892..9481+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig1304.2496.1 ID=mRNA_Ecto-sp13_S_contig1304.2496.1|Name=mRNA_Ecto-sp13_S_contig1304.2496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=590bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1304:8892..9481+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGCACCACCACCGTGCGGGCAAGGGTCGGCGGTGGACGCCTTGGCGG
CGGCGGCTGCGGCGGCGGCGGCGGCGTTGTTGGTATTTCCGAGGAGGACA
AGGAGACCAAGGCCCCATCCCCAGCAACCAACGGTGGCGGCGCCGGCGAT
GGTGGAGAGCTAGAGAAACCACGAGGGTCTGTCGAAACGCTCGCCGAGGC
TGTCGACGACGACGACGCCGGAGAGGCATCGGCAGGAGAGAACGAAGCCT
GCTCCTGTACCGATTCCGCAACAGCAACAACAACAACACCGCAGACTTTC
GGACGACAGCCGCAGACGACTACGAAGAGGAGCACAGACGTCGATTCGTT
GAGGGCCGAGGGTCCCGCACCTGCTCCGGGAGGTGCGGCAGAGGCCCCGG
CGCCCCCTACGCCTGCGGCGTCCGGGTTTATCACCGGCGGGGGAAGGCCC
GTCCATGTCTCCGCCGAGGCGTTGCTGAAGGCGAAACGACTCCTGGCCGA
TGCAAGTGGAGACGACATTGAAGCCGCGGGTGGAGTCGAACGGGGAGATC
AAGAGAGTGCGGCGGCAGCGAGGAAAGGCGCGCCGCCGGC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1304:8892..9481+

>mRNA_Ecto-sp13_S_contig1304.2496.1 ID=mRNA_Ecto-sp13_S_contig1304.2496.1|Name=mRNA_Ecto-sp13_S_contig1304.2496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=588bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1304:8892..9481+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGCACCACCACCGTGCGGGCAAGGGTCGGCGGTGGACGCCTTGGCGG
CGGCGGCTGCGGCGGCGGCGGCGGCGTTGTTGGTATTTCCGAGGAGGACA
AGGAGACCAAGGCCCCATCCCCAGCAACCAACGGTGGCGGCGCCGGCGAT
GGTGGAGAGCTAGAGAAACCACGAGGGTCTGTCGAAACGCTCGCCGAGGC
TGTCGACGACGACGACGCCGGAGAGGCATCGGCAGGAGAGAACGAAGCCT
GCTCCTGTACCGATTCCGCAACAGCAACAACAACAACACCGCAGACTTTC
GGACGACAGCCGCAGACGACTACGAAGAGGAGCACAGACGTCGATTCGTT
GAGGGCCGAGGGTCCCGCACCTGCTCCGGGAGGTGCGGCAGAGGCCCCGG
CGCCCCCTACGCCTGCGGCGTCCGGGTTTATCACCGGCGGGGGAAGGCCC
GTCCATGTCTCCGCCGAGGCGTTGCTGAAGGCGAAACGACTCCTGGCCGA
TGCAAGTGGAGACGACATTGAAGCCGCGGGTGGAGTCGAACGGGGAGATC
AAGAGAGTGCGGCGGCAGCGAGGAAAGGCGCGCCGCCG