prot_Ecto-sp13_S_contig130.2464.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig130.2464.1
Unique Nameprot_Ecto-sp13_S_contig130.2464.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length350
Homology
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BLAST of mRNA_Ecto-sp13_S_contig130.2464.1 vs. uniprot
Match: D7FQJ2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ2_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 1.010e-120
Identity = 183/191 (95.81%), Postives = 185/191 (96.86%), Query Frame = 0 
Query:    1 MGNEISSGARPRSVGEVPPGVVIKKKGELIIVDTLLEEGLNDGDLPHLCLDKTLLMGSGHDTFGPKDLEDVLTSVRRTKRKLNKLSVMFNGTGGQGIGNFIAKDTSVREVTVLCEDLSDDSIQSLAEALETNNTVEKLLLGGKELQEGAATALESVLKSPFSALQQLTLFNCGFRDVGAELLASGLACNNT 191
            MGNEISS ARPR+VGE PPGVVIKKKGELI+VDTLLEEGLNDGDLPHLCLDKTLLMGSGHDT GPKDLEDVLTSVRRTKRKLNKLSVMFNGTGGQGIGNFIAKDTSVREVTVLCEDLSDDSIQSLAEALETN TVEKLLLGGKELQEGAA ALESVLKSPFSALQQLTLFNCGFRDVGAELLASGLA NNT
Sbjct:    1 MGNEISSSARPRNVGEAPPGVVIKKKGELIVVDTLLEEGLNDGDLPHLCLDKTLLMGSGHDTLGPKDLEDVLTSVRRTKRKLNKLSVMFNGTGGQGIGNFIAKDTSVREVTVLCEDLSDDSIQSLAEALETNKTVEKLLLGGKELQEGAAAALESVLKSPFSALQQLTLFNCGFRDVGAELLASGLARNNT 191
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BLAST of mRNA_Ecto-sp13_S_contig130.2464.1 vs. uniprot
Match: A0A835YRN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRN5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.460e-7
Identity = 35/107 (32.71%), Postives = 54/107 (50.47%), Query Frame = 0 
Query:   30 IIVDTLLEEGLNDGDLPHLCLDKTLLMGSGHDTFGPKDLEDVLTSVRRTKRK---------------------LNKLSVMFNGTGGQGIGNFIAKDTSVREVTVLCE 115
            +I D L E+G  DGDLPHL LD+TL+   GH    P  LE +L   +R +                       + KL++ FN +   G+G+++A +  + E++VLCE
Sbjct:   36 LIQDCLQEDGAADGDLPHLYLDRTLIARQGHAALTPDALEQLLLYAQRRRTPGHAALXXXXXXXXXXXXXXXPVKKLTLEFNHSEALGLGDYVAANRDLEELSVLCE 142
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig130.2464.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQJ2_ECTSI1.010e-12095.81Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835YRN5_9STRA3.460e-732.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 273..300
e-value: 0.15
score: 21.2
coord: 161..188
e-value: 5.2
score: 12.1
coord: 245..272
e-value: 0.63
score: 18.5
coord: 301..324
e-value: 50.0
score: 5.1
coord: 189..216
e-value: 0.081
score: 22.0
coord: 132..159
e-value: 47.0
score: 5.4
coord: 217..244
e-value: 0.075
score: 22.2
NoneNo IPR availablePANTHERPTHR24114FAMILY NOT NAMEDcoord: 205..319
NoneNo IPR availablePANTHERPTHR24114:SF30LEUCINE-RICH REPEAT-CONTAINING PROTEIN 74Acoord: 77..234
coord: 205..319
NoneNo IPR availablePANTHERPTHR24114FAMILY NOT NAMEDcoord: 77..234
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 63..323
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 189..211
e-value: 0.0022
score: 17.9
coord: 218..239
e-value: 0.14
score: 12.3
coord: 273..295
e-value: 7.7E-4
score: 19.3
coord: 303..315
e-value: 1.9
score: 8.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 58..216
e-value: 3.6E-21
score: 77.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 217..340
e-value: 1.1E-26
score: 95.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig130contigEcto-sp13_S_contig130:25242..30349 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig130.2464.1mRNA_Ecto-sp13_S_contig130.2464.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig130 25242..30349 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig130.2464.1 ID=prot_Ecto-sp13_S_contig130.2464.1|Name=mRNA_Ecto-sp13_S_contig130.2464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=350bp
MGNEISSGARPRSVGEVPPGVVIKKKGELIIVDTLLEEGLNDGDLPHLCL
DKTLLMGSGHDTFGPKDLEDVLTSVRRTKRKLNKLSVMFNGTGGQGIGNF
IAKDTSVREVTVLCEDLSDDSIQSLAEALETNNTVEKLLLGGKELQEGAA
TALESVLKSPFSALQQLTLFNCGFRDVGAELLASGLACNNTLQRLDLAYC
GVGEDGAAAIACAVHFHPTLTHLNLKNNAVGARGSAALADALRGNFVVRE
LMLGTNCVGSSGAGALAGALSENTALVYLDLGSNSISDDGGVAIAEGLVL
NGSLRHLNLRRNAIGQETCERIRVGWNKRNAKKSMQLRQPWHDGLSLPF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf