mRNA_Ecto-sp13_S_contig130.2464.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig130.2464.1
Unique NamemRNA_Ecto-sp13_S_contig130.2464.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig130.2464.1 vs. uniprot
Match: D7FQJ2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ2_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 1.010e-120
Identity = 183/191 (95.81%), Postives = 185/191 (96.86%), Query Frame = 1 
Query:    1 MGNEISSGARPRSVGEVPPGVVIKKKGELIIVDTLLEEGLNDGDLPHLCLDKTLLMGSGHDTFGPKDLEDVLTSVRRTKRKLNKLSVMFNGTGGQGIGNFIAKDTSVREVTVLCEDLSDDSIQSLAEALETNNTVEKLLLGGKELQEGAATALESVLKSPFSALQQLTLFNCGFRDVGAELLASGLACNNT 573
            MGNEISS ARPR+VGE PPGVVIKKKGELI+VDTLLEEGLNDGDLPHLCLDKTLLMGSGHDT GPKDLEDVLTSVRRTKRKLNKLSVMFNGTGGQGIGNFIAKDTSVREVTVLCEDLSDDSIQSLAEALETN TVEKLLLGGKELQEGAA ALESVLKSPFSALQQLTLFNCGFRDVGAELLASGLA NNT
Sbjct:    1 MGNEISSSARPRNVGEAPPGVVIKKKGELIVVDTLLEEGLNDGDLPHLCLDKTLLMGSGHDTLGPKDLEDVLTSVRRTKRKLNKLSVMFNGTGGQGIGNFIAKDTSVREVTVLCEDLSDDSIQSLAEALETNKTVEKLLLGGKELQEGAAAALESVLKSPFSALQQLTLFNCGFRDVGAELLASGLARNNT 191
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BLAST of mRNA_Ecto-sp13_S_contig130.2464.1 vs. uniprot
Match: A0A835YRN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRN5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.460e-7
Identity = 35/107 (32.71%), Postives = 54/107 (50.47%), Query Frame = 1 
Query:   88 IIVDTLLEEGLNDGDLPHLCLDKTLLMGSGHDTFGPKDLEDVLTSVRRTKRK---------------------LNKLSVMFNGTGGQGIGNFIAKDTSVREVTVLCE 345
            +I D L E+G  DGDLPHL LD+TL+   GH    P  LE +L   +R +                       + KL++ FN +   G+G+++A +  + E++VLCE
Sbjct:   36 LIQDCLQEDGAADGDLPHLYLDRTLIARQGHAALTPDALEQLLLYAQRRRTPGHAALXXXXXXXXXXXXXXXPVKKLTLEFNHSEALGLGDYVAANRDLEELSVLCE 142
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig130.2464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQJ2_ECTSI1.010e-12095.81Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835YRN5_9STRA3.460e-732.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig130contigEcto-sp13_S_contig130:25242..30349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1050
Hectar predicted targeting categoryother localisation
Exons11
Cds size1050
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig130.2464.1prot_Ecto-sp13_S_contig130.2464.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig130 25242..30349 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462696.4693556-CDS-Ecto-sp13_S_contig130:25241..253071681462696.4693556-CDS-Ecto-sp13_S_contig130:25241..25307Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig130 25242..25307 +
1681462696.4800684-CDS-Ecto-sp13_S_contig130:25472..255881681462696.4800684-CDS-Ecto-sp13_S_contig130:25472..25588Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig130 25473..25588 +
1681462696.4895499-CDS-Ecto-sp13_S_contig130:26501..265901681462696.4895499-CDS-Ecto-sp13_S_contig130:26501..26590Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig130 26502..26590 +
1681462696.507723-CDS-Ecto-sp13_S_contig130:26929..269851681462696.507723-CDS-Ecto-sp13_S_contig130:26929..26985Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig130 26930..26985 +
1681462696.5182045-CDS-Ecto-sp13_S_contig130:27394..275701681462696.5182045-CDS-Ecto-sp13_S_contig130:27394..27570Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig130 27395..27570 +
1681462696.5276642-CDS-Ecto-sp13_S_contig130:27903..279871681462696.5276642-CDS-Ecto-sp13_S_contig130:27903..27987Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig130 27904..27987 +
1681462696.5371706-CDS-Ecto-sp13_S_contig130:28403..284871681462696.5371706-CDS-Ecto-sp13_S_contig130:28403..28487Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig130 28404..28487 +
1681462696.5543535-CDS-Ecto-sp13_S_contig130:28994..290781681462696.5543535-CDS-Ecto-sp13_S_contig130:28994..29078Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig130 28995..29078 +
1681462696.5685787-CDS-Ecto-sp13_S_contig130:29346..294301681462696.5685787-CDS-Ecto-sp13_S_contig130:29346..29430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig130 29347..29430 +
1681462696.5874903-CDS-Ecto-sp13_S_contig130:29917..300011681462696.5874903-CDS-Ecto-sp13_S_contig130:29917..30001Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig130 29918..30001 +
1681462696.5978494-CDS-Ecto-sp13_S_contig130:30222..303491681462696.5978494-CDS-Ecto-sp13_S_contig130:30222..30349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig130 30223..30349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig130.2464.1

>prot_Ecto-sp13_S_contig130.2464.1 ID=prot_Ecto-sp13_S_contig130.2464.1|Name=mRNA_Ecto-sp13_S_contig130.2464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=350bp
MGNEISSGARPRSVGEVPPGVVIKKKGELIIVDTLLEEGLNDGDLPHLCL
DKTLLMGSGHDTFGPKDLEDVLTSVRRTKRKLNKLSVMFNGTGGQGIGNF
IAKDTSVREVTVLCEDLSDDSIQSLAEALETNNTVEKLLLGGKELQEGAA
TALESVLKSPFSALQQLTLFNCGFRDVGAELLASGLACNNTLQRLDLAYC
GVGEDGAAAIACAVHFHPTLTHLNLKNNAVGARGSAALADALRGNFVVRE
LMLGTNCVGSSGAGALAGALSENTALVYLDLGSNSISDDGGVAIAEGLVL
NGSLRHLNLRRNAIGQETCERIRVGWNKRNAKKSMQLRQPWHDGLSLPF*
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mRNA from alignment at Ecto-sp13_S_contig130:25242..30349+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig130.2464.1 ID=mRNA_Ecto-sp13_S_contig130.2464.1|Name=mRNA_Ecto-sp13_S_contig130.2464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig130:25242..30349+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAAATGAGATCAGCAGCGGCGCGCGGCCGAGAAGTGTCGGGGAGGT
TCCACCGGGGGTTGTGGTGAGCCCATGGCCTGCAGATTACAGCGTAGCTC
TGTCCAGTGTCTGCAGCAATACGCATACGATATTTTATGTATACGTAAAC
CCTGCAGCATGTTTCGTATCTACACGCCTTTTTGTGTAGACTATAATGCA
ATTCAACTGTTTGCCGACTCCATCCACACAGATAAAAAAGAAGGGAGAAT
TGATCATCGTGGACACGCTGCTCGAAGAGGGCCTCAACGACGGCGACTTG
CCTCACCTTTGCCTGGATAAGACGCTCTTGATGGGTTCAGGGCACGAGTG
AGTGTGATACCAGGGAAGAAGAAGAACAACAACAACACCAGAACATGATC
GCAACAGCATTCATTCGCCAGTGGGGGAAATTCATGCGGAAAATATGACC
TGTGCAGCGTTGTCACTCTTGACGAGAGAGACCACATCTTTCTTACCATG
GAGACGGAACATATCTGGTTTACCCTGGTTTAGGATCTGTGCGCGTTTAA
CACGTACTTCCAAACACAACAGCACTGTTTGTTGTATGAAAGGCATTGAT
TGGCAAACGTTTGATGAAGACTCTCCTCGCGTCTGCGGCCACCGGACAAA
AACATCGAAAATGTACGCCCCGCCATGAATGAACAGGCTACTACTGTGAA
ATGTTGGGAGTATCTTTGTTTAACTATAAGGTACGTCAACCTTCCGGTGC
GCCGCGCGGTGCCGTGTACGCCTGGTGCTCTTGTGCCTTGTGCTCAACCC
CTTCCAAACCAGGAACAGATATCATGCAAGGTTGACAACTCTACACCCGA
CCCACGTTCAGAGTGACACACTTACAAGTTGTAGTTCCCACCTGCTCCTT
GGTTTCCCGGGTTCGGCCTCTAAGAAGAGACGACGCCGCGTGGGGCGGAG
GATTGTGCGCGCGCGTTCTATCTTTGTTTCCTTAGTGATCTCTTAGATAG
CAATAATGCAATCCTCGCGTGTTGTACGAATGATATATCCAAACAAACAT
GCGACCCAGACACGCGACCATACGAACAGGGTTTAGTTTACGGGCGTCGT
GTCCAACACATATATGTACCTGGCTTTACCACGCAGGAGTATCACACATG
ATGGCATAAACTCCAGCTAGTTTTATCCAGAGCACTTCTACGTTGTTGCC
CCCCCGAGGCTTACCTTGTGTTTAACTCACGTTGTTGATGGTCGTCGACA
TAATCATCAGCACGTTCGGGCCGAAGGACTTGGAGGACGTCCTGACCAGC
GTCCGCAGGACAAAGCGCAAGCTCAACAAGCTGTCCGTCATGTTCAACGG
TAAGGAGGTGACAAGCCAATGTGCCGGCGTGTACGTTCAGCGTGGTATCG
CACAAAGCTATCAATACTCACGGTGGAATATGTGTGCCTTGTACCTCGTG
CAAAAGTATAAACGCTAATTGTGCATATGAGAAGGTGAAGAGTTTTCTTC
CCGTTGACCCGCTTGTTCAAATGAAATCTCTTCAAATCTATCAATGTAGC
CTAAGGCTTTCGGCGAGATGAGGTATGATCTTGGACGTCGCAATGTATTG
ATTGTGGTGGCGGTCTGAGAATAATGAGGTACCCTAACAGGTTGACCAAA
CAATACCCCCAACGTTGACTGCCGGCTCGTGCTTGCAGGTACGGGGGGTC
AAGGAATCGGTAACTTCATTGCCAAGGACACAAGCGTTCGTGAGGTTAGA
AGGGCCCAGCAATTGTCTCATGTCGAAGGAGAGGAGATTCATTCTATGTC
TCTTGAGCTTTATATCTGGAAGCGGCTAGCATGGCCCAGGTTGCCACCCA
TCAAGAAAAGGATACTGACATGATCCCGTTTAGAAGGCATGCACGGTTGT
AATCGTTTTTCCGTTTGTGAACGCACTTGCCCAACATACGGGGGAGGCCA
GAAAGTCAGCCGCCTCCCACAAAATAGCGCGAATAGAATCGAAAAGACGA
GAGGGGAGCATCCAAATCATCATTTTCCCTTCAATACACGAGCGAAACGA
CAGGACATCGATGCCAATGCCAGTACCAGTATCCAATACCACCAACACCA
ACACCAACACCACCACCAACAACAACGACAGAACCGACCACAAAAACACA
AAGGTAACGGTCCTGTGCGAAGATCTGTCCGACGACTCCATCCAGTCGCT
GGCCGAGGCGCTAGAGACCAACAACACGGTCGAAAAGCTCTTGTTGGGGG
GAAAGGAGCTACAGGAGGGCGCGGCGACGGCCTTGGAGAGCGTGCTGAAA
TCGCCTTTTTCCGCGTTGCAGCAACTGACGTGAGAGCCTAACGATACATT
CATGATTGGTGTACATATAAGTCAAGTGCCGAATCTAGGGGATTCAGCCC
ACATTAGATGCAACACAGCTTGGTTTATTTTTGCGACTGACTTGATTTCT
GTCCGTAGCATTTTTCATGGATGGGTAGTTCTTTTCCCAGAGTCGAATTT
CTGGACAACTGTCGTACGTTCGAAAGGGCCCATCGACACGTGGCGGCACT
GGCTACAGGCACGCAGAATATTTGGGTTTCGTCTTGGTAGATCTCACAAG
ACTACGCTCTCTGCTCCCCTCTCTCTGTGTTGTTCTTTTTTGATGGCGTC
CGTCCGGGGCAGTTTGTTTAACTGCGGCTTCCGGGATGTCGGGGCTGAGC
TCTTGGCATCGGGACTCGCTTGTAACAACACCTTACAGCGATTGGAGTGA
GTCTCCACATGTACGTAGTATGCCGCTTGCCGCCGTCACCCCGAACCCTC
CACCAAGATTTTACTAGAGTCGTTCCTTCAAGACAATTGTGGTTTGACGT
ATATAATTAAGATGATTTCACAAGAGCCGTCTCCTTCAAGACAGTTTTGG
TTTTACATAGGATAAGATGGACAGTCTCTCCTTTCTTTTTCTGGTCTCGT
GTATCCTGGCACCAGCCAGATTCGCGTAGATCGCACCCTACTCCAGCTTC
CACGGTGCATTCTTCGCGAATCTTGGACTTGCCATCCAACATGTCATCCT
TGAGCTCACATGTTTTTCCCCTTCATTCTCTGCCACCGCCCCCATGCCCC
GTTCTCTTATTCAACACCCTGCAACACCGGGATTGGGGGTATTGATGTCT
GTCATCGTCCAGCCTCGCGTACTGCGGCGTAGGTGAGGATGGAGCTGCGG
CGATTGCTTGTGCGGTGCATTTTCACCCGACCTTGACCCACCTCAAGTGA
GCGAGTCGAACGGGCTCGATCCCTCTTGCCTCATCGTTGCTCGAGTTTGC
TGGGGCAGAAGTCGTCTGGTTTGAAGGTTTGTGATTGGGTCCGTGGAAGT
CTCTCGGCATCCCTTTCTCCAGGCTTTGTCGCCCACGGTCGCTAAAAATA
TCGTTCAGTGTGTGCGGTACGAGGGGTATGACTGTAATAGTGTAGTGCTA
GAAGTATGACTGGGATAGTATTAGTCATGCTTGCTGCCCCGTTTCACGTC
GTTACCTGCATGCTTGACGATCAGTTCTCGTTCGCTGTTTCGGTCTCATC
CGACCACGCTCACGGACAAGCACTTCGTGTTTGTTTGAATCCACTCGATG
TTACACGCTGTGCGTCTATGTCGAGTGCGGCCTACCACAAGCACAAGAGA
TGAAATCGCTGTCTTCGTTTCAACTGTTTCCGATTGATGTGACTTGTTCA
TTTCATGCGCTGTAGACCTCGCATATTGACGAAAAATATAAAAAAATTGG
CAGCCTCAAGAACAACGCCGTCGGGGCCCGGGGTTCCGCCGCTTTGGCGG
ACGCACTGCGAGGGAACTTCGTAGTGCGGGAGTTAATGTGAGAGGAGCAC
CTCTCCTTTTGTCTTTAATATTAACTGTTTGACCGCTAAAGTGTTCTTCG
TCCACAAGGGTAACCCAAAAGCGGAAGAAATGGCGCCCCGAAAAAATACA
GGCTGGGCATTGGCCATGACGCGCGCCATTGCTGCATACAGGAGAAATGC
TGAATAGGCAGGTGGATGGGGCTTCCATGCTCGGCGATCCACCAGTGTTT
CTTATAACGAATATTTTTACGCGCCCCGACCCCCCCGCAACCGTTGCCCG
ACCAGGTTGGGCACCAACTGTGTTGGGAGTAGCGGTGCCGGTGCTCTGGC
GGGTGCGTTATCGGAAAACACGGCGTTGGTGTATCTCGAGTGAGTGACGA
CCGCACGATGCAATGTCTGTTTGTTGGTTAAACGAGGCCGGTTCGATCGG
AGAAGAAGTACGGGCGCTCATGGGGGTTTCGGAACCGGTATTTGGTCGAT
TGAAGTCGCATCGTATATAATGGAACGGGTGAGTGGTCGGTTGCGGGCTG
ATTGTTCCGGAAAAACCGGCAGAGCCAGGATGGTTCACCTCCCCTAGACG
AATGCCAGCATTCTTTTTTTGTGCACACACATGTCCGCCAACACGATATA
TTGGGAGAACTGCCAATCAAAAGGAGCACCTCGCGCCCTTTTTCGGCGAA
CGAATCGAAGAGGGAACACAAAAAAAAAAGACAACAAGGCCTGGTTCTCT
CTGACATCTGCTATCTCTCTTAAGAAACCTTTGCGTGTTTTATCAGCGAC
GAGGTGAGTTTTAGTTCCTCTTCTCTGTCGGACGTTTCCGTCGTTAACTG
CGTGATGGATGCATGGACCAAAGCAGCCTAGGGTCCAACAGCATCAGTGA
CGACGGAGGGGTGGCCATCGCAGAGGGTCTCGTGCTGAACGGGTCGTTGA
GACACCTCAAGTGAGTCGCCCACAACCAACCGGTCGTTGAGCAAGCAAGG
TTAAAGTAAGTGCAACCACCCGGGTGTGTGCCACTTTGCTCCTTCAGCCG
TCCTTTACCTCTGAAGAAGGACAGGTATGTCTACACCAAGAAAACAAAGT
CGAAATGTAGCGGAGGAGTGAATGATTGCTATGGGAACGTTTTCTGAACT
TATTCCCGCCCGCCCCGGTCCCCCACTGAAGTTTACGAAGAAATGCTATC
GGGCAAGAGACGTGCGAGAGAATCCGTGTCGGTTGGAACAAGCGCAACGC
CAAGAAGAGCATGCAGCTCCGACAGCCTTGGCACGACGGCCTCTCCCTGC
CGTTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig130:25242..30349+

>mRNA_Ecto-sp13_S_contig130.2464.1 ID=mRNA_Ecto-sp13_S_contig130.2464.1|Name=mRNA_Ecto-sp13_S_contig130.2464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1050bp|location=Sequence derived from alignment at Ecto-sp13_S_contig130:25242..30349+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAAATGAGATCAGCAGCGGCGCGCGGCCGAGAAGTGTCGGGGAGGT
TCCACCGGGGGTTGTGATAAAAAAGAAGGGAGAATTGATCATCGTGGACA
CGCTGCTCGAAGAGGGCCTCAACGACGGCGACTTGCCTCACCTTTGCCTG
GATAAGACGCTCTTGATGGGTTCAGGGCACGACACGTTCGGGCCGAAGGA
CTTGGAGGACGTCCTGACCAGCGTCCGCAGGACAAAGCGCAAGCTCAACA
AGCTGTCCGTCATGTTCAACGGTACGGGGGGTCAAGGAATCGGTAACTTC
ATTGCCAAGGACACAAGCGTTCGTGAGGTAACGGTCCTGTGCGAAGATCT
GTCCGACGACTCCATCCAGTCGCTGGCCGAGGCGCTAGAGACCAACAACA
CGGTCGAAAAGCTCTTGTTGGGGGGAAAGGAGCTACAGGAGGGCGCGGCG
ACGGCCTTGGAGAGCGTGCTGAAATCGCCTTTTTCCGCGTTGCAGCAACT
GACTTTGTTTAACTGCGGCTTCCGGGATGTCGGGGCTGAGCTCTTGGCAT
CGGGACTCGCTTGTAACAACACCTTACAGCGATTGGACCTCGCGTACTGC
GGCGTAGGTGAGGATGGAGCTGCGGCGATTGCTTGTGCGGTGCATTTTCA
CCCGACCTTGACCCACCTCAACCTCAAGAACAACGCCGTCGGGGCCCGGG
GTTCCGCCGCTTTGGCGGACGCACTGCGAGGGAACTTCGTAGTGCGGGAG
TTAATGTTGGGCACCAACTGTGTTGGGAGTAGCGGTGCCGGTGCTCTGGC
GGGTGCGTTATCGGAAAACACGGCGTTGGTGTATCTCGACCTAGGGTCCA
ACAGCATCAGTGACGACGGAGGGGTGGCCATCGCAGAGGGTCTCGTGCTG
AACGGGTCGTTGAGACACCTCAATTTACGAAGAAATGCTATCGGGCAAGA
GACGTGCGAGAGAATCCGTGTCGGTTGGAACAAGCGCAACGCCAAGAAGA
GCATGCAGCTCCGACAGCCTTGGCACGACGGCCTCTCCCTGCCGTTCTGA
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