mRNA_Ecto-sp13_S_contig12989.2451.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12989.2451.1
Unique NamemRNA_Ecto-sp13_S_contig12989.2451.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12989.2451.1 vs. uniprot
Match: A0A6H5JLT2_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT2_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 1.190e-59
Identity = 112/130 (86.15%), Postives = 120/130 (92.31%), Query Frame = 1 
Query:    1 MLVEASIVANSTSYKVRALHIAVSLAVSTPASILIPKLFATAAAPPPSVTVTMLHAWEKIVPPTSQASLTAQDMTDTKANSQSRWLREPNTVVAIFRLITSAVLRSTSRVSPSFRGNRRYSTGGAVDRGT 390
            MLVEASIVANSTSYK+RA+HI VSLAVS PASIL PKLFA AAAPPPS+TVTMLHAWEKIVPPTSQ S TAQDMT  KANSQSRWLREPNTVVA+FRLI+SAVL+STSRVS SFR +RRYS+GGAVDRGT
Sbjct:  483 MLVEASIVANSTSYKIRAVHIVVSLAVSMPASILFPKLFAAAAAPPPSITVTMLHAWEKIVPPTSQGSTTAQDMTYAKANSQSRWLREPNTVVAVFRLISSAVLKSTSRVSSSFREDRRYSSGGAVDRGT 612
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BLAST of mRNA_Ecto-sp13_S_contig12989.2451.1 vs. uniprot
Match: D7G4X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X3_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 2.610e-48
Identity = 93/107 (86.92%), Postives = 100/107 (93.46%), Query Frame = 1 
Query:   70 SLAVSTPASILIPKLFATAAAPPPSVTVTMLHAWEKIVPPTSQASLTAQDMTDTKANSQSRWLREPNTVVAIFRLITSAVLRSTSRVSPSFRGNRRYSTGGAVDRGT 390
            SLAVS PASILIPKLFATAAAPPPSVTVTMLHAWEKIVP T+Q  LTAQDMT++KANSQ+RWLREPNTV+A+FRLI+SAVLRST RV PSFRG RRYSTGGAVDRGT
Sbjct: 1440 SLAVSMPASILIPKLFATAAAPPPSVTVTMLHAWEKIVPSTNQEVLTAQDMTNSKANSQTRWLREPNTVMAVFRLISSAVLRSTLRVPPSFRGGRRYSTGGAVDRGT 1546
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BLAST of mRNA_Ecto-sp13_S_contig12989.2451.1 vs. uniprot
Match: D7FLP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLP9_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 4.710e-10
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:  277 VAIFRLITSAVLRSTSRVSPSFRGNRRYSTGGAVDRGT 390
            +A+FRLI+SAVLRST RV PSFRG RRYSTGGAVDRGT
Sbjct:    1 MAVFRLISSAVLRSTLRVPPSFRGGRRYSTGGAVDRGT 38
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12989.2451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JLT2_9PHAE1.190e-5986.15GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4X3_ECTSI2.610e-4886.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLP9_ECTSI4.710e-1084.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12989contigEcto-sp13_S_contig12989:652..1920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score176.8
Seed ortholog evalue6.6e-42
Seed eggNOG ortholog2880.D7G4X3
Model size393
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
Cds size393
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462694.9924612-CDS-Ecto-sp13_S_contig12989:651..7931681462694.9924612-CDS-Ecto-sp13_S_contig12989:651..793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12989 652..793 -
1681462695.0040596-CDS-Ecto-sp13_S_contig12989:1087..11611681462695.0040596-CDS-Ecto-sp13_S_contig12989:1087..1161Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12989 1088..1161 -
1681462695.015054-CDS-Ecto-sp13_S_contig12989:1502..16081681462695.015054-CDS-Ecto-sp13_S_contig12989:1502..1608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12989 1503..1608 -
1681462695.022417-CDS-Ecto-sp13_S_contig12989:1849..19201681462695.022417-CDS-Ecto-sp13_S_contig12989:1849..1920Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12989 1850..1920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12989.2451.1prot_Ecto-sp13_S_contig12989.2451.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12989 652..1920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12989.2451.1

>prot_Ecto-sp13_S_contig12989.2451.1 ID=prot_Ecto-sp13_S_contig12989.2451.1|Name=mRNA_Ecto-sp13_S_contig12989.2451.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
MLVEASIVANSTSYKVRALHIAVSLAVSTPASILIPKLFATAAAPPPSVT
VTMLHAWEKIVPPTSQASLTAQDMTDTKANSQSRWLREPNTVVAIFRLIT
SAVLRSTSRVSPSFRGNRRYSTGGAVDRGT*
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mRNA from alignment at Ecto-sp13_S_contig12989:652..1920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12989.2451.1 ID=mRNA_Ecto-sp13_S_contig12989.2451.1|Name=mRNA_Ecto-sp13_S_contig12989.2451.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1269bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12989:652..1920- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGTAGAGGCCAGCATTGTCGCAAACTCGACGAGCTACAAAGTTCG
AGCTCTGCATATTGCTGTCAGGTGGGTCGTGTGGGGGCTACGTCGGCGTC
GAATGTACTCTCTCTCGCCTACCACACCGTCCAGATGTGTTGGGATATCT
AAAGTGGATTTGTGCCCGTCTCCCTTCGTTGGCCCACCATACGCAGTCCA
ATACTCTACCTGCTAAGGGTGGCCAAACATCGTTTTCAGCTGGAGGTTTG
GATGTTCACACCCACTGTTGCGGCTGTGCCGACCGTTCACCCTTGCATTG
TTTGCCTTGCAGCTTGGCTGTTTCGACGCCGGCTTCAATCCTAATTCCCA
AACTGTTCGCGACTGCAGCAGCCCCCCCCCCGTCGGTCACGGTGACAATG
CTCCATGCGTGGGAAAAGGTGAGGAAGCGTCCGTTGGTTCAGAATAAACG
CGAGGATGAAAGTTGTTCAGGCCGTTCCACCCAGAGTACAATGGACCGAA
GGCATGCACCAAAGGCTCACCTAGAAGATGGTGTGAGCTCACGGTAATAT
CGCTTTTCCACCGAACTGCGAGGCGGTTCAGATGTTTGTACTGGGCACAA
CTGCTGGTTGGATTGCAGTTCAACCTACGGCGCATTCTGGTGTCATAGGC
AACCGGTGTACATCGTGGTGTGTCAATAACTTGGAGAAGCGCACCCATCC
GATGAAAGGACGAACAACGCCCTGGTTTGTCGTGTTGGCCCAAACGTAAA
TCTCTACAGATTGTCCCACCCACGAGCCAAGCAAGTCTGACCGCTCAAGA
CATGACCGATACTAAGGCCAACTCCCAATCGAGGTGTGCCTTCGTCGTTG
GTGGCGCTTGGTGGTGGAAACACCAATTCGTGTGCAAAGCCCAGCTCTGT
CGTGCTCTCTCTCATGGTGGTGGTGCTGCTCACTTCGCAGTTCCCGTTGC
TACTCTAAGGTGCCTTCTATTTTGGTTTTTCTTCCAATGGTCCACCGGTG
CGTACTCCACCAAGGTGAAAGTTATTGGGGGAAGATTGCGAATGTCAAAG
ACACAAGACAAGGCCTGATGGGACAACAACAAACTATCGCGTTCAGCACC
AACTCGACTGCGCCCTCTTACGGGCAGGTGGCTGCGGGAGCCGAACACGG
TGGTGGCGATTTTTCGTCTGATTACCTCAGCGGTGTTGAGGAGCACGTCG
CGAGTGTCGCCCTCATTCCGAGGGAATCGACGGTACTCCACGGGTGGGGC
TGTGGATCGCGGAACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12989:652..1920-

>mRNA_Ecto-sp13_S_contig12989.2451.1 ID=mRNA_Ecto-sp13_S_contig12989.2451.1|Name=mRNA_Ecto-sp13_S_contig12989.2451.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12989:652..1920- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGTAGAGGCCAGCATTGTCGCAAACTCGACGAGCTACAAAGTTCG
AGCTCTGCATATTGCTGTCAGCTTGGCTGTTTCGACGCCGGCTTCAATCC
TAATTCCCAAACTGTTCGCGACTGCAGCAGCCCCCCCCCCGTCGGTCACG
GTGACAATGCTCCATGCGTGGGAAAAGATTGTCCCACCCACGAGCCAAGC
AAGTCTGACCGCTCAAGACATGACCGATACTAAGGCCAACTCCCAATCGA
GGTGGCTGCGGGAGCCGAACACGGTGGTGGCGATTTTTCGTCTGATTACC
TCAGCGGTGTTGAGGAGCACGTCGCGAGTGTCGCCCTCATTCCGAGGGAA
TCGACGGTACTCCACGGGTGGGGCTGTGGATCGCGGAACGTGA
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