Homology
BLAST of mRNA_Ecto-sp13_S_contig10221.245.1 vs. uniprot
Match: D7FUS3_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS3_ECTSI) HSP 1 Score: 53.9 bits (128), Expect = 2.660e-6 Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -1 Query: 207 KRLEEELKQNWPPRSRYADEEEAEGD 284
KRLEEELKQNWPPRSRYADEEEAEGD
Sbjct: 222 KRLEEELKQNWPPRSRYADEEEAEGD 247
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10221.245.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| D7FUS3_ECTSI | 2.660e-6 | 100.00 | PARP catalytic domain-containing protein n=1 Tax=E... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 285 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 279 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462516.5308337-UTR-Ecto-sp13_S_contig10221:719..724 | 1681462516.5308337-UTR-Ecto-sp13_S_contig10221:719..724 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig10221 720..724 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462516.5402815-CDS-Ecto-sp13_S_contig10221:724..924 | 1681462516.5402815-CDS-Ecto-sp13_S_contig10221:724..924 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10221 725..924 + |
| 1681462516.5494561-CDS-Ecto-sp13_S_contig10221:1398..1477 | 1681462516.5494561-CDS-Ecto-sp13_S_contig10221:1398..1477 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10221 1399..1477 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10221.245.1 >prot_Ecto-sp13_S_contig10221.245.1 ID=prot_Ecto-sp13_S_contig10221.245.1|Name=mRNA_Ecto-sp13_S_contig10221.245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
MARDSTAAAVLQAGVADLKTNCAAVNGPHVCRVKEDTPKAGMWCKHGDPA
SVHSLTCTSTAEADKAKITFGFLFIGVAGPGGPVLLQFFLEPL back to topmRNA from alignment at Ecto-sp13_S_contig10221:720..1477+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig10221.245.1 ID=mRNA_Ecto-sp13_S_contig10221.245.1|Name=mRNA_Ecto-sp13_S_contig10221.245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=758bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10221:720..1477+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAAATGGCACGCGACAGCACGGCAGCTGCAGTATTGCAGGCAGGAGTG
GCAGATCTCAAAACGAACTGCGCCGCAGTCAACGGACCGCATGTGTGCCG
TGTAAAGGAAGACACACCAAAGGCGGGGATGTGGTGCAAGCACGGTGATC
CAGCGTCAGTCCATTCACTCACGTGTACCAGTACTGCTGAGGCGGACAAA
GCAAAGTAAGCACAAGCGATCTAGCAAAGAGAGCAAGTCCAAATACACCA
CAACACGAGAAGCACGTTTGTTCACGCCTACCATGGAGGTAGCTCTTCCG
TACTCTACGAAAGTGATTAGGCTCAACAACAGCGTTGGAAAATTCTGATG
GAAGAGAAAAGGAACGTCATCAGGCCCGTCAACGGCAACCACCTTCGTAT
ATACTTTTGAATGCCTCCCCCCACACACACCCGCCTCCCGCAAACGGCCA
GCACCCGGTGACGACGACCCTAACACCTAAACGACAAACAGGATCTATTT
GTTATACTAAGGCAGACATACCTGGGAAAACTGCAGGGCGTAGGCGGCGA
GTTCCGCCGAAACCGCCGTGCAGTCGCAAATGGCTTCGATCGCCAACCGA
GTTGACTCCACGTTGGGGTCCCCCACCCCCGCACCCCCACCCGCCTGCCC
GGTACCGCCGCCGCCGCCGGCGCGGTTAGGATCACCTTCGGCTTCCTCTT
CATCGGCGTAGCGGGACCTGGGGGGCCAGTTCTGCTTCAGTTCTTCCTCG
AGCCTCTT back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig10221:720..1477+ >mRNA_Ecto-sp13_S_contig10221.245.1 ID=mRNA_Ecto-sp13_S_contig10221.245.1|Name=mRNA_Ecto-sp13_S_contig10221.245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10221:720..1477+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACGCGACAGCACGGCAGCTGCAGTATTGCAGGCAGGAGTGGCAGA
TCTCAAAACGAACTGCGCCGCAGTCAACGGACCGCATGTGTGCCGTGTAA
AGGAAGACACACCAAAGGCGGGGATGTGGTGCAAGCACGGTGATCCAGCG
TCAGTCCATTCACTCACGTGTACCAGTACTGCTGAGGCGGACAAAGCAAA
GATCACCTTCGGCTTCCTCTTCATCGGCGTAGCGGGACCTGGGGGGCCAG
TTCTGCTTCAGTTCTTCCTCGAGCCTCTT back to top
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