mRNA_Ecto-sp13_S_contig10221.245.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10221.245.1
Unique NamemRNA_Ecto-sp13_S_contig10221.245.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10221.245.1 vs. uniprot
Match: D7FUS3_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS3_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 2.660e-6
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -1 
Query:  207 KRLEEELKQNWPPRSRYADEEEAEGD 284
            KRLEEELKQNWPPRSRYADEEEAEGD
Sbjct:  222 KRLEEELKQNWPPRSRYADEEEAEGD 247
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10221.245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUS3_ECTSI2.660e-6100.00PARP catalytic domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10221contigEcto-sp13_S_contig10221:720..1477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size285
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462516.5308337-UTR-Ecto-sp13_S_contig10221:719..7241681462516.5308337-UTR-Ecto-sp13_S_contig10221:719..724Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10221 720..724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462516.5402815-CDS-Ecto-sp13_S_contig10221:724..9241681462516.5402815-CDS-Ecto-sp13_S_contig10221:724..924Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10221 725..924 +
1681462516.5494561-CDS-Ecto-sp13_S_contig10221:1398..14771681462516.5494561-CDS-Ecto-sp13_S_contig10221:1398..1477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10221 1399..1477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10221.245.1prot_Ecto-sp13_S_contig10221.245.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10221 725..1477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10221.245.1

>prot_Ecto-sp13_S_contig10221.245.1 ID=prot_Ecto-sp13_S_contig10221.245.1|Name=mRNA_Ecto-sp13_S_contig10221.245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
MARDSTAAAVLQAGVADLKTNCAAVNGPHVCRVKEDTPKAGMWCKHGDPA
SVHSLTCTSTAEADKAKITFGFLFIGVAGPGGPVLLQFFLEPL
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mRNA from alignment at Ecto-sp13_S_contig10221:720..1477+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10221.245.1 ID=mRNA_Ecto-sp13_S_contig10221.245.1|Name=mRNA_Ecto-sp13_S_contig10221.245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=758bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10221:720..1477+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAAATGGCACGCGACAGCACGGCAGCTGCAGTATTGCAGGCAGGAGTG
GCAGATCTCAAAACGAACTGCGCCGCAGTCAACGGACCGCATGTGTGCCG
TGTAAAGGAAGACACACCAAAGGCGGGGATGTGGTGCAAGCACGGTGATC
CAGCGTCAGTCCATTCACTCACGTGTACCAGTACTGCTGAGGCGGACAAA
GCAAAGTAAGCACAAGCGATCTAGCAAAGAGAGCAAGTCCAAATACACCA
CAACACGAGAAGCACGTTTGTTCACGCCTACCATGGAGGTAGCTCTTCCG
TACTCTACGAAAGTGATTAGGCTCAACAACAGCGTTGGAAAATTCTGATG
GAAGAGAAAAGGAACGTCATCAGGCCCGTCAACGGCAACCACCTTCGTAT
ATACTTTTGAATGCCTCCCCCCACACACACCCGCCTCCCGCAAACGGCCA
GCACCCGGTGACGACGACCCTAACACCTAAACGACAAACAGGATCTATTT
GTTATACTAAGGCAGACATACCTGGGAAAACTGCAGGGCGTAGGCGGCGA
GTTCCGCCGAAACCGCCGTGCAGTCGCAAATGGCTTCGATCGCCAACCGA
GTTGACTCCACGTTGGGGTCCCCCACCCCCGCACCCCCACCCGCCTGCCC
GGTACCGCCGCCGCCGCCGGCGCGGTTAGGATCACCTTCGGCTTCCTCTT
CATCGGCGTAGCGGGACCTGGGGGGCCAGTTCTGCTTCAGTTCTTCCTCG
AGCCTCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10221:720..1477+

>mRNA_Ecto-sp13_S_contig10221.245.1 ID=mRNA_Ecto-sp13_S_contig10221.245.1|Name=mRNA_Ecto-sp13_S_contig10221.245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10221:720..1477+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACGCGACAGCACGGCAGCTGCAGTATTGCAGGCAGGAGTGGCAGA
TCTCAAAACGAACTGCGCCGCAGTCAACGGACCGCATGTGTGCCGTGTAA
AGGAAGACACACCAAAGGCGGGGATGTGGTGCAAGCACGGTGATCCAGCG
TCAGTCCATTCACTCACGTGTACCAGTACTGCTGAGGCGGACAAAGCAAA
GATCACCTTCGGCTTCCTCTTCATCGGCGTAGCGGGACCTGGGGGGCCAG
TTCTGCTTCAGTTCTTCCTCGAGCCTCTT
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