mRNA_Ecto-sp13_S_contig12981.2446.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12981.2446.1
Unique NamemRNA_Ecto-sp13_S_contig12981.2446.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12981.2446.1 vs. uniprot
Match: D7FRC4_ECTSI (PNPLA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC4_ECTSI)

HSP 1 Score: 480 bits (1236), Expect = 1.330e-166
Identity = 262/371 (70.62%), Postives = 269/371 (72.51%), Query Frame = 2
Query:    2 RLTVVLSSVLGWKSIRAKEFRDGEDLIDALRCSCACFPLVLPHVFRGKRCFDG-----------------GLNTVTISPLYASTASIRPSRYVPLSWIALPPNDPGAID*LYDLGYRDALFWMANEGIEHTCSHVSRLS--------------------------------------------------------------------------RPSFTLSGCRMRPRRERHAELDAPRFVPSLEKFVGHGSYHALADSLFCVFFNIVWRPAAALLLCAELVTSLLLASSRAFAKDLRPLLWWLLPTLLLGGAALEHWPTAPQGIAAAIAXXXXXXXXXSREGAPGRESWQEARRSARALIDFRCVLVSTLL 841
            RLTVVLSSVLGWKSIRAKEFRDG+DLIDALRCSCACFPLVLPHVFRGKRCFDG                 G  TVTISPLYASTASIRPSRYVPLSWIALPPNDPGAID LYDLGYRDALFWMANEGIEHTCSHVSRLS                                                                          RPSFTLSGCRMRPRRERHAELDAPRFVPSLEKFVGHGSYHALADSLFCVFFN+VWRPAAALLLCAELVTSLLLASSRAFAKDLRPLLWWLLPTLLLG AALEHWPTA +GIAAA+A   XXXX  SREGAPG+ESW+EARRSARAL+DFRCVL STLL
Sbjct:  106 RLTVVLSSVLGWKSIRAKEFRDGDDLIDALRCSCACFPLVLPHVFRGKRCFDGVFSEGPSAPSLDEEEAGGRKTVTISPLYASTASIRPSRYVPLSWIALPPNDPGAIDWLYDLGYRDALFWMANEGIEHTCSHVSRLSKFSSSSNGCAPDSTMAKDSVLEGGASALRXXXXXXXXXXXRRGNEGGVGLKSTTAREDGEGRRNGGGQEGQFYVRPSFTLSGCRMRPRRERHAELDAPRFVPSLEKFVGHGSYHALADSLFCVFFNVVWRPAAALLLCAELVTSLLLASSRAFAKDLRPLLWWLLPTLLLGEAALEHWPTAMEGIAAAVAVAAXXXXAASREGAPGKESWREARRSARALVDFRCVLGSTLL 476          
BLAST of mRNA_Ecto-sp13_S_contig12981.2446.1 vs. uniprot
Match: A0A6H5KQY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY3_9PHAE)

HSP 1 Score: 446 bits (1147), Expect = 1.820e-152
Identity = 265/458 (57.86%), Postives = 273/458 (59.61%), Query Frame = 2
Query:    2 RLTVVLSSVLGWKSIRAKEFRDGEDLIDALRCSCACFPLVLPHVFRGKRCFDG-----------------GLNTVTISPLYASTASIRPSRYVPLSWIALPPNDPGAID*LYDLGYRDALFWMANEGIEHTCSHVSRLSR-----------------------------------------------------------------------------------------------------------------------------------------------------------------PSFTLSGCRMRPRRERHAELDAPRFVPSLEKFVGHGSYHALADSLFCVFFNIVWRPAAALLLCAELVTSLLLASSRAFAKDLRPLLWWLLPTLLLGGAALEHWPTAPQGIAAAIAXXXXXXXXXSREGAPGRESWQEARRSARALIDFRCVLVSTLL 841
            RLTVVLSSVLGWKSIRAKEFRDGEDLIDALRCSCACFPLVLPHVFRGKRCFDG                 GL TVTISPLYASTASIRPSRYVPLSWIALPPNDPGAID LYDLGYRDALFWMANEGI+HTCSHVSRLSR                                                                                                                                                                 PSFTLSGCRMRPRRERHAELDAPRFVPSLEKFVGHGSYHALADSLFCVFFN+VWRPAAALLLCAELVTSLLLASSRAFAKDLRPLLWWLLPTLLLGGAALEH P A QGIAAA+A XXXXXXX SREGAPG+ESW+EAR+SARAL+DFRCVLV+TLL
Sbjct:   64 RLTVVLSSVLGWKSIRAKEFRDGEDLIDALRCSCACFPLVLPHVFRGKRCFDGVFSEGPSAPSFDEEEARGLKTVTISPLYASTASIRPSRYVPLSWIALPPNDPGAIDWLYDLGYRDALFWMANEGIDHTCSHVSRLSRFSSSSTGCAPDSTMAKDSVLEGGASALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAARRGNEGVGLKSTTAREDGQGRRNGVGQERQFYVRPSFTLSGCRMRPRRERHAELDAPRFVPSLEKFVGHGSYHALADSLFCVFFNVVWRPAAALLLCAELVTSLLLASSRAFAKDLRPLLWWLLPTLLLGGAALEHRPIATQGIAAAVAVXXXXXXXASREGAPGKESWREARQSARALVDFRCVLVNTLL 521          
BLAST of mRNA_Ecto-sp13_S_contig12981.2446.1 vs. uniprot
Match: A0A7S3URP2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URP2_HETAK)

HSP 1 Score: 123 bits (308), Expect = 6.330e-29
Identity = 85/238 (35.71%), Postives = 116/238 (48.74%), Query Frame = 2
Query:    2 RLTVVLSSVLGWKSIRAKEFRDGEDLIDALRCSCACFPLVLPHVFR--GKRCFDGGLN---------TVTISPLYASTASIRPSRYVPLSWIALPPNDPGAID*LYDLGYRDALFWMANEGIEHTCSHVSRLSRPSFTLSGCRMRPRRERHAELDAPRFVPSLEKFVGHGSYHA----LADSLFCVFFNIVWRPAAALLLCAELVTSLLLASSRAFAKDLRPLLWWLLPTLLLGGAAL 670
            RL V  +S+  ++S+R   F    D+   L  SCA FPL  P V R  G    DGGL+         T+T++PL+   A I+PSRYVP  W ALPP DP  ID L+DLGY+D L WMA  G  HTC+H          +  C  RP R  H      +   S ++  G+GS  +    L DSL+  +  ++W+P A             LA+++   K+  P+L      L L GA L
Sbjct:  141 RLFVQTTSLPRFQSVRVSRFESALDMKTTLLASCAAFPLS-PLVRRLDGGLYVDGGLSDFQPILSKRTITVNPLWFWKADIKPSRYVPAIWAALPPKDPSTIDWLFDLGYKDCLSWMAKNGYAHTCTHCE-----DGDIVTCSKRPERAPHPYDQNSK--SSFQRVFGYGSQSSPLMRLLDSLWVFWLTVLWKPIALXXXXXXXXXXXXLAAAKGVWKEALPIL-----PLALFGACL 365          
BLAST of mRNA_Ecto-sp13_S_contig12981.2446.1 vs. uniprot
Match: A0A7S4D9M8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9M8_HETAK)

HSP 1 Score: 97.4 bits (241), Expect = 2.730e-19
Identity = 69/227 (30.40%), Postives = 101/227 (44.49%), Query Frame = 2
Query:   35 WKSIRAKEFRDGEDLIDALRCSCACFPLV-LPHVFRGKRCFDG---------GLNTVTISPLYASTASIRPSRYVPLSWIALPPNDPGAID*LYDLGYRDALFWMANEGIEHTCSHVSRLSRPSFTLSG----------------------CRMRPRRERHA-ELDAPRFVPSLEKFVGHGSYHALADSLFCVFFNIVWRPAAALLLCAELVTSLLLASSRAFAKDL 616
            ++ +    +   +DL  +L  SCA FP   L     G    DG           +T+T+SPLY STA I+PSRY+PL W   PP DP  +D L+DLGY D L WM     ++ C+H   ++      SG                      C  R +RE H  ++   R   S +++ G+G      D LFC     + +P    L+ AE+V S    + +A  K+L
Sbjct:  139 FEPVLLSSYESEKDLKTSLMASCAAFPFSNLVKRIDGAWYIDGIYSGFQPRLSPSTITVSPLYFSTADIKPSRYLPLMWTLFPPKDPSTVDWLFDLGYVDCLRWMYKH--DYRCTHTHEVNAYGGKQSGNIGEDQNNTITEDSDDHLPFLLCSKRLKREPHPYDVHQKR---SFQRYFGYGQTCWALDLLFCFLLYALLKPLGVFLVWAEMVVSAGFVAIKAIWKEL 360          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12981.2446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FRC4_ECTSI1.330e-16670.62PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KQY3_9PHAE1.820e-15257.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3URP2_HETAK6.330e-2935.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4D9M8_HETAK2.730e-1930.40Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12981contigEcto-sp13_S_contig12981:1946..3774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size846
Hectar predicted targeting categoryother localisation
Exons3
Cds size843
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462694.6576524-CDS-Ecto-sp13_S_contig12981:1946..24201681462694.6576524-CDS-Ecto-sp13_S_contig12981:1946..2420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12981 1947..2420 -
1681462694.6673646-CDS-Ecto-sp13_S_contig12981:2912..31211681462694.6673646-CDS-Ecto-sp13_S_contig12981:2912..3121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12981 2913..3121 -
1681462694.6793041-CDS-Ecto-sp13_S_contig12981:3614..37741681462694.6793041-CDS-Ecto-sp13_S_contig12981:3614..3774Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12981 3615..3774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12981.2446.1prot_Ecto-sp13_S_contig12981.2446.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12981 1947..3774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12981.2446.1

>prot_Ecto-sp13_S_contig12981.2446.1 ID=prot_Ecto-sp13_S_contig12981.2446.1|Name=mRNA_Ecto-sp13_S_contig12981.2446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=281bp
PADGGPVLRARLEVDTRQGVSRRGGPHRRAAVLVRVLPPGAAARVPGEAV
LRRGTQYGDHQPPVRQHRVDPPFPVRAPLLDRPASERPRGDRLTLRPRVP
RRALLDGQRRDRAHLLARVQALQAVLHPVRLPHASPPGAARRARRPPVRP
FPRKVRGPRELPRPGRLPLLRLLQHRVAPRRGPPPLRRARHEPPPSVLAG
VRERPPAAAVVAPPDPSPGRGCPGALADRAAGHSGGDRCGGSGGGRGKPG
GGSGEGELAGGTAVRSSADRLPLRAGEHPAA
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mRNA from alignment at Ecto-sp13_S_contig12981:1946..3774-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12981.2446.1 ID=mRNA_Ecto-sp13_S_contig12981.2446.1|Name=mRNA_Ecto-sp13_S_contig12981.2446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1829bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12981:1946..3774- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGCTGACGGTGGTCCTGTCCTCCGTGCTCGGCTGGAAGTCGATACGCG CCAAGGAGTTTCGCGACGGGGAGGACCTCATCGACGCGCTGCGGTGCTCG TGCGCGTGCTTCCCCCTGGTGCTGCCGCACGTGTTCCGGGGGAAGCGGTG CTTCGACGGGGTGTTCTCCGAGGGACCGAGCGCTCCCAGCCTCGACGAGG GGGAGGCTGGGGTAAGGAGGAGGAGAAAGAGGTTTTTTTCTCGGACGATG ATGAGGAAGGGGAGGGGGGCGTACTCATATTTTGCGTGCCATTGTTACTA GACCAGCGTCCTCGAGAGGATGGAGCATTTTTTCACCTTGCCAAAGGTGA ACCAATATCATTTTCCATGCCGTACCTAGCGCGCGTCAGTCACGGGGGGG TAGTGCCACGACCGGGACGAATCCAACCCGGATGGTTTCTCACTACAGTT TACCGCCTAGCATGTACGGTGGTTCTCTTGTCTTCGGGCTGCAATTGTTC CGGTCCTTGCTCAGGACCAGTAGTGATAACAACAACAATGAAAGGAGTGC CTGCTTTGATCTCCCGCTCGCGTGTAAACGTCCATCACCTCCTCGGAACT TGCCTGTTACTCGCGCACACGTACTACATGCACCAACCGCGCCGTTTTTT CAGGGACTCAATACGGTGACCATCAGCCCCCTGTACGCCAGCACCGCGTC GATCCGCCCTTCCCGGTACGTGCCCCTCTCCTGGATCGCCCTGCCTCCGA ACGACCCCGGGGCGATCGACTGACTCTACGACCTAGGGTACCGCGACGCG CTCTTCTGGATGGCCAACGAAGGGATCGAGCACACCTGCTCGCACGTGTC CAGGCTCTCCAGGTTCTCAAGCAGCAGCAACGGATGCGCTCCCGACAGCA CCATGGCCGAGGACAGCGTTCTAGAGGGTGGGGCATCCGCCCTCCGCAGA AGAGACAGCAGCAGCAGCAGCAGCAGCAGCGAAGGCGACGACGACGAGAA CGACGATAGGTTGGCGGCGGAAAGGGCGACACCCTCGAACCCTACGACGT TTGCTAGCAGCAGAAGGAGCTCGTCTAACTCTCCTGTCAGGACGTCATTG GAGGAAACGGCGTCTGTTTCGTCGGCGGCTCCTCCTCCTGGTGACAGTAG TGGCGGGTTGGAACAAGGGAACAACGGCAACGAATCGCTATCACCGTCAT CGCCATCATCGCCATCGCCATCATCTTCCTCGTCGTCGGGTGTTGCAGCC AGACGAGGTATCGAAGGAGGATTAGGACTCACATCAACAACGGCACGGGA AGACGGGGAGGGGAGAAGGAACGGAGGCGGCCAAGAGAGGCAGTTCTACG TCAGGCCGTCCTTCACCCTGTCCGGCTGCCGCATGCGTCCCCGCCGGGAG CGGCACGCCGAGCTCGACGCCCCCCGGTTCGTCCCTTCCCTCGAAAAGTT CGTGGGCCACGGGAGCTACCACGCCCTGGCCGACTCCCTCTTCTGCGTCT TCTTCAACATCGTGTGGCGCCCCGCCGCGGCCCTCCTCCTCTGCGCCGAG CTCGTCACGAGCCTCCTCCTAGCGTCCTCGCGGGCGTTCGCGAAAGACCT CCGGCCGCTGCTGTGGTGGCTCCTCCCGACCCTTCTCCTGGGAGGGGCTG CCCTGGAGCATTGGCCGACCGCGCCGCAGGGCATAGCGGCGGCGATCGCT GCGGCGGCAGTGGTGGCGGCCGCGGCAAGCCGGGAGGGGGCTCCGGGGAG GGAGAGCTGGCAGGAGGCACGGCGGTCCGCTCGAGCGCTGATCGACTTCC GCTGCGTGCTGGTGAGCACCCTGCTGCTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12981:1946..3774-

>mRNA_Ecto-sp13_S_contig12981.2446.1 ID=mRNA_Ecto-sp13_S_contig12981.2446.1|Name=mRNA_Ecto-sp13_S_contig12981.2446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12981:1946..3774- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGCTGACGGTGGTCCTGTCCTCCGTGCTCGGCTGGAAGTCGATACGCG
CCAAGGAGTTTCGCGACGGGGAGGACCTCATCGACGCGCTGCGGTGCTCG
TGCGCGTGCTTCCCCCTGGTGCTGCCGCACGTGTTCCGGGGGAAGCGGTG
CTTCGACGGGGGACTCAATACGGTGACCATCAGCCCCCTGTACGCCAGCA
CCGCGTCGATCCGCCCTTCCCGGTACGTGCCCCTCTCCTGGATCGCCCTG
CCTCCGAACGACCCCGGGGCGATCGACTGACTCTACGACCTAGGGTACCG
CGACGCGCTCTTCTGGATGGCCAACGAAGGGATCGAGCACACCTGCTCGC
ACGTGTCCAGGCTCTCCAGGCCGTCCTTCACCCTGTCCGGCTGCCGCATG
CGTCCCCGCCGGGAGCGGCACGCCGAGCTCGACGCCCCCCGGTTCGTCCC
TTCCCTCGAAAAGTTCGTGGGCCACGGGAGCTACCACGCCCTGGCCGACT
CCCTCTTCTGCGTCTTCTTCAACATCGTGTGGCGCCCCGCCGCGGCCCTC
CTCCTCTGCGCCGAGCTCGTCACGAGCCTCCTCCTAGCGTCCTCGCGGGC
GTTCGCGAAAGACCTCCGGCCGCTGCTGTGGTGGCTCCTCCCGACCCTTC
TCCTGGGAGGGGCTGCCCTGGAGCATTGGCCGACCGCGCCGCAGGGCATA
GCGGCGGCGATCGCTGCGGCGGCAGTGGTGGCGGCCGCGGCAAGCCGGGA
GGGGGCTCCGGGGAGGGAGAGCTGGCAGGAGGCACGGCGGTCCGCTCGAG
CGCTGATCGACTTCCGCTGCGTGCTGGTGAGCACCCTGCTGCT
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