mRNA_Ecto-sp13_S_contig12981.2446.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12981.2446.1 vs. uniprot
Match: D7FRC4_ECTSI (PNPLA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC4_ECTSI) HSP 1 Score: 480 bits (1236), Expect = 1.330e-166 Identity = 262/371 (70.62%), Postives = 269/371 (72.51%), Query Frame = 2
Query: 2 RLTVVLSSVLGWKSIRAKEFRDGEDLIDALRCSCACFPLVLPHVFRGKRCFDG-----------------GLNTVTISPLYASTASIRPSRYVPLSWIALPPNDPGAID*LYDLGYRDALFWMANEGIEHTCSHVSRLS--------------------------------------------------------------------------RPSFTLSGCRMRPRRERHAELDAPRFVPSLEKFVGHGSYHALADSLFCVFFNIVWRPAAALLLCAELVTSLLLASSRAFAKDLRPLLWWLLPTLLLGGAALEHWPTAPQGIAAAIAXXXXXXXXXSREGAPGRESWQEARRSARALIDFRCVLVSTLL 841
RLTVVLSSVLGWKSIRAKEFRDG+DLIDALRCSCACFPLVLPHVFRGKRCFDG G TVTISPLYASTASIRPSRYVPLSWIALPPNDPGAID LYDLGYRDALFWMANEGIEHTCSHVSRLS RPSFTLSGCRMRPRRERHAELDAPRFVPSLEKFVGHGSYHALADSLFCVFFN+VWRPAAALLLCAELVTSLLLASSRAFAKDLRPLLWWLLPTLLLG AALEHWPTA +GIAAA+A XXXX SREGAPG+ESW+EARRSARAL+DFRCVL STLL
Sbjct: 106 RLTVVLSSVLGWKSIRAKEFRDGDDLIDALRCSCACFPLVLPHVFRGKRCFDGVFSEGPSAPSLDEEEAGGRKTVTISPLYASTASIRPSRYVPLSWIALPPNDPGAIDWLYDLGYRDALFWMANEGIEHTCSHVSRLSKFSSSSNGCAPDSTMAKDSVLEGGASALRXXXXXXXXXXXRRGNEGGVGLKSTTAREDGEGRRNGGGQEGQFYVRPSFTLSGCRMRPRRERHAELDAPRFVPSLEKFVGHGSYHALADSLFCVFFNVVWRPAAALLLCAELVTSLLLASSRAFAKDLRPLLWWLLPTLLLGEAALEHWPTAMEGIAAAVAVAAXXXXAASREGAPGKESWREARRSARALVDFRCVLGSTLL 476
BLAST of mRNA_Ecto-sp13_S_contig12981.2446.1 vs. uniprot
Match: A0A6H5KQY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY3_9PHAE) HSP 1 Score: 446 bits (1147), Expect = 1.820e-152 Identity = 265/458 (57.86%), Postives = 273/458 (59.61%), Query Frame = 2
Query: 2 RLTVVLSSVLGWKSIRAKEFRDGEDLIDALRCSCACFPLVLPHVFRGKRCFDG-----------------GLNTVTISPLYASTASIRPSRYVPLSWIALPPNDPGAID*LYDLGYRDALFWMANEGIEHTCSHVSRLSR-----------------------------------------------------------------------------------------------------------------------------------------------------------------PSFTLSGCRMRPRRERHAELDAPRFVPSLEKFVGHGSYHALADSLFCVFFNIVWRPAAALLLCAELVTSLLLASSRAFAKDLRPLLWWLLPTLLLGGAALEHWPTAPQGIAAAIAXXXXXXXXXSREGAPGRESWQEARRSARALIDFRCVLVSTLL 841
RLTVVLSSVLGWKSIRAKEFRDGEDLIDALRCSCACFPLVLPHVFRGKRCFDG GL TVTISPLYASTASIRPSRYVPLSWIALPPNDPGAID LYDLGYRDALFWMANEGI+HTCSHVSRLSR PSFTLSGCRMRPRRERHAELDAPRFVPSLEKFVGHGSYHALADSLFCVFFN+VWRPAAALLLCAELVTSLLLASSRAFAKDLRPLLWWLLPTLLLGGAALEH P A QGIAAA+A XXXXXXX SREGAPG+ESW+EAR+SARAL+DFRCVLV+TLL
Sbjct: 64 RLTVVLSSVLGWKSIRAKEFRDGEDLIDALRCSCACFPLVLPHVFRGKRCFDGVFSEGPSAPSFDEEEARGLKTVTISPLYASTASIRPSRYVPLSWIALPPNDPGAIDWLYDLGYRDALFWMANEGIDHTCSHVSRLSRFSSSSTGCAPDSTMAKDSVLEGGASALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAARRGNEGVGLKSTTAREDGQGRRNGVGQERQFYVRPSFTLSGCRMRPRRERHAELDAPRFVPSLEKFVGHGSYHALADSLFCVFFNVVWRPAAALLLCAELVTSLLLASSRAFAKDLRPLLWWLLPTLLLGGAALEHRPIATQGIAAAVAVXXXXXXXASREGAPGKESWREARQSARALVDFRCVLVNTLL 521
BLAST of mRNA_Ecto-sp13_S_contig12981.2446.1 vs. uniprot
Match: A0A7S3URP2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URP2_HETAK) HSP 1 Score: 123 bits (308), Expect = 6.330e-29 Identity = 85/238 (35.71%), Postives = 116/238 (48.74%), Query Frame = 2
Query: 2 RLTVVLSSVLGWKSIRAKEFRDGEDLIDALRCSCACFPLVLPHVFR--GKRCFDGGLN---------TVTISPLYASTASIRPSRYVPLSWIALPPNDPGAID*LYDLGYRDALFWMANEGIEHTCSHVSRLSRPSFTLSGCRMRPRRERHAELDAPRFVPSLEKFVGHGSYHA----LADSLFCVFFNIVWRPAAALLLCAELVTSLLLASSRAFAKDLRPLLWWLLPTLLLGGAAL 670
RL V +S+ ++S+R F D+ L SCA FPL P V R G DGGL+ T+T++PL+ A I+PSRYVP W ALPP DP ID L+DLGY+D L WMA G HTC+H + C RP R H + S ++ G+GS + L DSL+ + ++W+P A LA+++ K+ P+L L L GA L
Sbjct: 141 RLFVQTTSLPRFQSVRVSRFESALDMKTTLLASCAAFPLS-PLVRRLDGGLYVDGGLSDFQPILSKRTITVNPLWFWKADIKPSRYVPAIWAALPPKDPSTIDWLFDLGYKDCLSWMAKNGYAHTCTHCE-----DGDIVTCSKRPERAPHPYDQNSK--SSFQRVFGYGSQSSPLMRLLDSLWVFWLTVLWKPIALXXXXXXXXXXXXLAAAKGVWKEALPIL-----PLALFGACL 365
BLAST of mRNA_Ecto-sp13_S_contig12981.2446.1 vs. uniprot
Match: A0A7S4D9M8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9M8_HETAK) HSP 1 Score: 97.4 bits (241), Expect = 2.730e-19 Identity = 69/227 (30.40%), Postives = 101/227 (44.49%), Query Frame = 2
Query: 35 WKSIRAKEFRDGEDLIDALRCSCACFPLV-LPHVFRGKRCFDG---------GLNTVTISPLYASTASIRPSRYVPLSWIALPPNDPGAID*LYDLGYRDALFWMANEGIEHTCSHVSRLSRPSFTLSG----------------------CRMRPRRERHA-ELDAPRFVPSLEKFVGHGSYHALADSLFCVFFNIVWRPAAALLLCAELVTSLLLASSRAFAKDL 616
++ + + +DL +L SCA FP L G DG +T+T+SPLY STA I+PSRY+PL W PP DP +D L+DLGY D L WM ++ C+H ++ SG C R +RE H ++ R S +++ G+G D LFC + +P L+ AE+V S + +A K+L
Sbjct: 139 FEPVLLSSYESEKDLKTSLMASCAAFPFSNLVKRIDGAWYIDGIYSGFQPRLSPSTITVSPLYFSTADIKPSRYLPLMWTLFPPKDPSTVDWLFDLGYVDCLRWMYKH--DYRCTHTHEVNAYGGKQSGNIGEDQNNTITEDSDDHLPFLLCSKRLKREPHPYDVHQKR---SFQRYFGYGQTCWALDLLFCFLLYALLKPLGVFLVWAEMVVSAGFVAIKAIWKEL 360 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12981.2446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12981.2446.1 >prot_Ecto-sp13_S_contig12981.2446.1 ID=prot_Ecto-sp13_S_contig12981.2446.1|Name=mRNA_Ecto-sp13_S_contig12981.2446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=281bp PADGGPVLRARLEVDTRQGVSRRGGPHRRAAVLVRVLPPGAAARVPGEAVback to top mRNA from alignment at Ecto-sp13_S_contig12981:1946..3774- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12981.2446.1 ID=mRNA_Ecto-sp13_S_contig12981.2446.1|Name=mRNA_Ecto-sp13_S_contig12981.2446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1829bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12981:1946..3774- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12981:1946..3774- >mRNA_Ecto-sp13_S_contig12981.2446.1 ID=mRNA_Ecto-sp13_S_contig12981.2446.1|Name=mRNA_Ecto-sp13_S_contig12981.2446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12981:1946..3774- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |