mRNA_Ecto-sp13_S_contig12959.2428.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12959.2428.1
Unique NamemRNA_Ecto-sp13_S_contig12959.2428.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12959.2428.1 vs. uniprot
Match: A0A6H5L8Z2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Z2_9PHAE)

HSP 1 Score: 772 bits (1994), Expect = 4.730e-274
Identity = 446/576 (77.43%), Postives = 469/576 (81.42%), Query Frame = 3 
Query:    3 ASASRRGRDTLVPSGFECVAHPVFFRNDVSAGSSNYAAPLPTSSTAATSAMRSTTTLDPTAAAAWDLEALEGGDDLGRDKDAPGDASTSSGRGGREVHSVCPICLGKFEEPVTLTSCLHTFCHTCILGWYEHTVAVALSRANLSAFHPERGNSNTWRGGSSNNISGRSGTSIGNRDGGRKRPAPVPYRCPLCQVPGPFFLAVERPRSSSSSSTGERNVNPKSRKPSKLKFRLLGARTVFGGXXXXXXXXXXXXXXXXXXXXXXDGGTAGYPSPSMSDLRAAVRTQLALAAAA----------AGRQAGPRPDAERGSEPSCTGTNGKWVPGRKGMAPETVPGMGMTRSAAEGDRDSCGTPVGGXXXXXXXXXXXXXXXXXXXSDRSGNRVDSSGGADVGGGAFAAAEPGCEEGELQMVPTEGGERPSPTPRNQGRDSDRCRSRGRDRKEWDRRTEQQDDHGCSGFRNAPSSEVRREPWHASSSNPXXXXXXXXXXXXXXXXXXXXXXXXXGATASCRRTNSIPALHSGGAGSSRGGAACGLPWEPGSMAAEDGLKAIETLLEKEKESLRRKMAGGD 1700
            ASASRRGRDTLVPSGFECVAHPVFFRNDVS GSS+YAAP PTS+TAA SAM STTT+DPTAAAAWD+EALEGGDD GRD DAPG+AS  SGRGGREVHSVCPICLG+FEEPVTLTSCLHTFCHTCILGWYEHTVAVALSR NLSAFHPERGNSNTWRGGSSN+ISG SGTS GNRDGGRKRPAPVPYRCPLCQVPGPFFLAVERPRSSS    G+R  NPKS KPSKLKFRLLGA TVFGG                      DGGTAGYPSPSM+DLRAAV+T                  A RQAGPRPDAE GSEPSCTGTNG  VPG +GMAPETVPGMGMTR AA+GDR+SCGT VG   XXXXXXXXXXX      SDRSG+RVDSSGGADVG   FAAAEPGCEEG   MVP+EGGERPSP PRN+GRDSD CRSRGR  KE DRRTEQQ DHGCSGFRNA SSEVR EPWHASS NP           XXXXXXXXXXXX  GA ASCR++NS P+LHSGGAG SRGGA+CGLPW+PGSMAAEDGL+AIE LLEKEKESLR+KMAGGD
Sbjct:    8 ASASRRGRDTLVPSGFECVAHPVFFRNDVSDGSSDYAAP-PTSNTAARSAMNSTTTIDPTAAAAWDVEALEGGDDSGRDTDAPGNASIISGRGGREVHSVCPICLGRFEEPVTLTSCLHTFCHTCILGWYEHTVAVALSRGNLSAFHPERGNSNTWRGGSSNDISGSSGTSTGNRDGGRKRPAPVPYRCPLCQVPGPFFLAVERPRSSSFK--GKREANPKSSKPSKLKFRLLGAPTVFGGGGPVSRGVAVDEHAGGGRGKGGDGGTAGYPSPSMADLRAAVQTXXXXXXXXXXXXXXXXXXADRQAGPRPDAEGGSEPSCTGTNGMGVPGGEGMAPETVPGMGMTRGAADGDRNSCGTLVGSGSXXXXXXXXXXXGQ----SDRSGDRVDSSGGADVGEPLFAAAEPGCEEGGSPMVPSEGGERPSPVPRNRGRDSDWCRSRGRGSKERDRRTEQQGDHGCSGFRNASSSEVRGEPWHASSGNPPHSCSGDEERKXXXXXXXXXXXXRRGAIASCRQSNSKPSLHSGGAGLSRGGASCGLPWDPGSMAAEDGLQAIEILLEKEKESLRKKMAGGD 576
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BLAST of mRNA_Ecto-sp13_S_contig12959.2428.1 vs. uniprot
Match: D8LPV3_ECTSI (zf-RING_UBOX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV3_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.760e-33
Identity = 63/74 (85.14%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  153 MRSTTTLDPTAAAAWDLEALEGGDDLGRDKDAPGDASTSSGRGGREVHSVCPICLGKFEEPVTLTSCLHTFCHT 374
            M +TTT+DPTAA+AWD+EALEGGD+ GRD DAP +AS SSGRGGREVHSVCPICLGKFEEPVTLTSCLHTFCHT
Sbjct:    1 MHTTTTIDPTAASAWDVEALEGGDESGRDTDAPSNASISSGRGGREVHSVCPICLGKFEEPVTLTSCLHTFCHT 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12959.2428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8Z2_9PHAE4.730e-27477.43RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LPV3_ECTSI2.760e-3385.14zf-RING_UBOX domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12959contigEcto-sp13_S_contig12959:2580..4881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2038
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionZinc finger, C3HC4 RING-type
Ec32 orthologEc-02_004200.1
Cds size1563
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462693.1376324-UTR-Ecto-sp13_S_contig12959:2579..29021681462693.1376324-UTR-Ecto-sp13_S_contig12959:2579..2902Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12959 2580..2902 -
1681462693.1703103-UTR-Ecto-sp13_S_contig12959:4729..48811681462693.1703103-UTR-Ecto-sp13_S_contig12959:4729..4881Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12959 4730..4881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462693.1481633-CDS-Ecto-sp13_S_contig12959:2902..42411681462693.1481633-CDS-Ecto-sp13_S_contig12959:2902..4241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12959 2903..4241 -
1681462693.1582322-CDS-Ecto-sp13_S_contig12959:4505..47291681462693.1582322-CDS-Ecto-sp13_S_contig12959:4505..4729Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12959 4506..4729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12959.2428.1prot_Ecto-sp13_S_contig12959.2428.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12959 2903..4729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12959.2428.1

>prot_Ecto-sp13_S_contig12959.2428.1 ID=prot_Ecto-sp13_S_contig12959.2428.1|Name=mRNA_Ecto-sp13_S_contig12959.2428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=521bp
MRSTTTLDPTAAAAWDLEALEGGDDLGRDKDAPGDASTSSGRGGREVHSV
CPICLGKFEEPVTLTSCLHTFCHTCILGWYEHTVAVALSRANLSAFHPER
GNSNTWRGGSSNNISGRSGTSIGNRDGGRKRPAPVPYRCPLCQVPGPFFL
AVERPRSSSSSSTGERNVNPKSRKPSKLKFRLLGARTVFGGGGPASGGVA
VDEHAGGGRRKGGDGGTAGYPSPSMSDLRAAVRTQLALAAAAAGRQAGPR
PDAERGSEPSCTGTNGKWVPGRKGMAPETVPGMGMTRSAAEGDRDSCGTP
VGGGSSSSSSSGSSSRHNNNRQSDRSGNRVDSSGGADVGGGAFAAAEPGC
EEGELQMVPTEGGERPSPTPRNQGRDSDRCRSRGRDRKEWDRRTEQQDDH
GCSGFRNAPSSEVRREPWHASSSNPPHSCSGGEERKKRKRAQKEKEKKRR
GATASCRRTNSIPALHSGGAGSSRGGAACGLPWEPGSMAAEDGLKAIETL
LEKEKESLRRKMAGGDGTRL*
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mRNA from alignment at Ecto-sp13_S_contig12959:2580..4881-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12959.2428.1 ID=mRNA_Ecto-sp13_S_contig12959.2428.1|Name=mRNA_Ecto-sp13_S_contig12959.2428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2302bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12959:2580..4881- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCATCTGCTAGCCGTCGCGGTAGAGATACGCTAGTCCCGAGTGGCTTT
GAGTGCGTGGCACATCCAGTCTTCTTCCGCAATGATGTGTCGGCTGGGTC
GTCTAATTACGCCGCTCCGCTTCCCACGTCATCGACGGCTGCTACATCGG
CTATGCGTTCGACCACAACGCTTGACCCAACCGCGGCGGCCGCTTGGGAT
CTAGAAGCTCTAGAGGGCGGAGATGACTTAGGCAGGGATAAAGATGCTCC
GGGCGATGCAAGCACCAGCAGTGGGCGTGGTGGAAGGGAGGTGCACTCTG
TGTGTCCAATATGCCTTGGCAAGTTCGAAGAACCGGTGACCCTCACGTCC
TGCCTCCATACCTTCTGCCATACATGGTGAGAGAGATACAGAGAAAGGAA
GGTGAATCATGAACACCGTTGTCTGTCTGTTTAGTTTCGAAACTTTATGC
ATAGAATGCTTGCTCTGTGGTGCTTTTTGCGGCATTCTTTGGTTTGCCGC
GGTACGCCTCTCGTTCAACCAACCCCACCGACCCTCACACCTGTTACGAT
TGCCTACACGCCTCCCCCCCCCCCCCCCCCCGCACCTTCCCGTTCCCCTG
CGTCGGTCACCCGCTCCTCTTACATCCCGACTTTCTGAAGCATTTTGGGC
TGGTACGAGCACACCGTTGCTGTTGCGCTCTCCCGGGCCAATCTGTCCGC
GTTCCACCCCGAACGAGGGAACAGCAACACCTGGAGAGGCGGTAGCAGCA
ACAATATCAGCGGCAGGAGCGGGACGAGCATAGGCAACAGGGATGGTGGT
CGCAAGAGACCGGCCCCGGTGCCGTACAGATGCCCTCTCTGCCAGGTGCC
GGGGCCGTTCTTTCTCGCCGTCGAGCGACCGCGCTCCTCCTCCTCCTCCT
CTACGGGCGAGAGGAACGTCAACCCCAAGAGCAGGAAACCGTCGAAGCTC
AAATTCAGGCTCCTCGGAGCGCGAACAGTGTTCGGGGGCGGCGGGCCGGC
GAGCGGAGGGGTGGCGGTGGACGAGCACGCCGGCGGCGGTCGCAGGAAAG
GGGGCGATGGCGGGACGGCTGGCTATCCCAGTCCCAGCATGTCTGACCTC
AGGGCCGCCGTACGAACACAGCTTGCCCTTGCTGCTGCTGCCGCCGGTCG
ACAGGCTGGGCCACGGCCGGACGCCGAAAGAGGTTCAGAACCTTCATGCA
CGGGGACGAATGGAAAGTGGGTTCCCGGTAGGAAAGGCATGGCACCGGAG
ACGGTCCCGGGCATGGGGATGACGCGAAGTGCGGCTGAGGGTGATCGGGA
CTCATGCGGAACGCCTGTCGGTGGCGGTAGCAGCAGCAGCAGCAGCAGCG
GCAGCAGCAGCAGGCACAACAACAACCGGCAGAGCGACAGGAGCGGGAAC
CGTGTGGATAGTTCTGGTGGCGCTGATGTTGGGGGGGGGGCGTTTGCTGC
GGCAGAACCCGGTTGCGAAGAAGGCGAATTGCAGATGGTTCCAACGGAAG
GAGGAGAGAGACCGTCACCCACGCCCCGAAATCAAGGTCGAGATAGCGAT
CGGTGTCGGAGTCGAGGTCGCGATAGAAAGGAATGGGACCGGAGGACGGA
GCAGCAGGATGACCACGGATGCTCGGGTTTCCGAAACGCACCTTCCTCGG
AGGTACGAAGAGAACCATGGCACGCCTCCTCCAGCAACCCTCCCCATAGC
TGTAGCGGCGGCGAGGAGCGAAAAAAGCGAAAGCGGGCGCAGAAGGAGAA
AGAAAAGAAACGAAGAGGTGCCACAGCCAGCTGCCGTCGAACAAATAGTA
TACCAGCTTTGCATAGCGGCGGAGCTGGCTCGAGTAGAGGCGGGGCGGCT
TGTGGGCTTCCATGGGAACCGGGATCGATGGCTGCCGAGGACGGCCTGAA
AGCTATCGAGACCCTGCTAGAGAAGGAAAAGGAAAGCCTGCGAAGAAAAA
TGGCGGGAGGAGATGGTACCCGGTTGTGACGAGGAGGTTGGGGACTGAGC
GAACTTGCGTCATGCCCTGTACAGACTGAGCTTGTTTAGCAAGATTCCAC
AATGTGCTCATAGAAGGTGTTGCAAAAAGACGGGAGGGGGGTGGTACAGT
AGGTATCCTGTCCGAGTAGCGGCACAGTACGAAGAGCAACGCAGTGATGC
TCTCGGCGTGGCGGGTTTGCTTGTGCTTGTGCTCCCGGTAGTAGCGCACG
GCAAGCCGGGTTTCCAACGAATGCTACGATTCAGGGGGGGTGGGGGGGGC
ACCGCAGATTCTCCTCCGTGAATGTATATCGGCTAGACATTAGACAAATC
GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12959:2580..4881-

>mRNA_Ecto-sp13_S_contig12959.2428.1 ID=mRNA_Ecto-sp13_S_contig12959.2428.1|Name=mRNA_Ecto-sp13_S_contig12959.2428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1563bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12959:2580..4881- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTTCGACCACAACGCTTGACCCAACCGCGGCGGCCGCTTGGGATCT
AGAAGCTCTAGAGGGCGGAGATGACTTAGGCAGGGATAAAGATGCTCCGG
GCGATGCAAGCACCAGCAGTGGGCGTGGTGGAAGGGAGGTGCACTCTGTG
TGTCCAATATGCCTTGGCAAGTTCGAAGAACCGGTGACCCTCACGTCCTG
CCTCCATACCTTCTGCCATACATGCATTTTGGGCTGGTACGAGCACACCG
TTGCTGTTGCGCTCTCCCGGGCCAATCTGTCCGCGTTCCACCCCGAACGA
GGGAACAGCAACACCTGGAGAGGCGGTAGCAGCAACAATATCAGCGGCAG
GAGCGGGACGAGCATAGGCAACAGGGATGGTGGTCGCAAGAGACCGGCCC
CGGTGCCGTACAGATGCCCTCTCTGCCAGGTGCCGGGGCCGTTCTTTCTC
GCCGTCGAGCGACCGCGCTCCTCCTCCTCCTCCTCTACGGGCGAGAGGAA
CGTCAACCCCAAGAGCAGGAAACCGTCGAAGCTCAAATTCAGGCTCCTCG
GAGCGCGAACAGTGTTCGGGGGCGGCGGGCCGGCGAGCGGAGGGGTGGCG
GTGGACGAGCACGCCGGCGGCGGTCGCAGGAAAGGGGGCGATGGCGGGAC
GGCTGGCTATCCCAGTCCCAGCATGTCTGACCTCAGGGCCGCCGTACGAA
CACAGCTTGCCCTTGCTGCTGCTGCCGCCGGTCGACAGGCTGGGCCACGG
CCGGACGCCGAAAGAGGTTCAGAACCTTCATGCACGGGGACGAATGGAAA
GTGGGTTCCCGGTAGGAAAGGCATGGCACCGGAGACGGTCCCGGGCATGG
GGATGACGCGAAGTGCGGCTGAGGGTGATCGGGACTCATGCGGAACGCCT
GTCGGTGGCGGTAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGGCA
CAACAACAACCGGCAGAGCGACAGGAGCGGGAACCGTGTGGATAGTTCTG
GTGGCGCTGATGTTGGGGGGGGGGCGTTTGCTGCGGCAGAACCCGGTTGC
GAAGAAGGCGAATTGCAGATGGTTCCAACGGAAGGAGGAGAGAGACCGTC
ACCCACGCCCCGAAATCAAGGTCGAGATAGCGATCGGTGTCGGAGTCGAG
GTCGCGATAGAAAGGAATGGGACCGGAGGACGGAGCAGCAGGATGACCAC
GGATGCTCGGGTTTCCGAAACGCACCTTCCTCGGAGGTACGAAGAGAACC
ATGGCACGCCTCCTCCAGCAACCCTCCCCATAGCTGTAGCGGCGGCGAGG
AGCGAAAAAAGCGAAAGCGGGCGCAGAAGGAGAAAGAAAAGAAACGAAGA
GGTGCCACAGCCAGCTGCCGTCGAACAAATAGTATACCAGCTTTGCATAG
CGGCGGAGCTGGCTCGAGTAGAGGCGGGGCGGCTTGTGGGCTTCCATGGG
AACCGGGATCGATGGCTGCCGAGGACGGCCTGAAAGCTATCGAGACCCTG
CTAGAGAAGGAAAAGGAAAGCCTGCGAAGAAAAATGGCGGGAGGAGATGG
TACCCGGTTGTGA
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