prot_Ecto-sp13_S_contig12959.2428.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12959.2428.1
Unique Nameprot_Ecto-sp13_S_contig12959.2428.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length521
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12959.2428.1 vs. uniprot
Match: A0A6H5L8Z2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Z2_9PHAE)

HSP 1 Score: 698 bits (1802), Expect = 1.870e-247
Identity = 401/526 (76.24%), Postives = 422/526 (80.23%), Query Frame = 0 
Query:    1 MRSTTTLDPTAAAAWDLEALEGGDDLGRDKDAPGDASTSSGRGGREVHSVCPICLGKFEEPVTLTSCLHTFCHTCILGWYEHTVAVALSRANLSAFHPERGNSNTWRGGSSNNISGRSGTSIGNRDGGRKRPAPVPYRCPLCQVPGPFFLAVERPRSSSSSSTGERNVNPKSRKPSKLKFRLLGARTVFGGXXXXXXXXXXXXXXXXXXXXXXDGGTAGYPSPSMSDLRAAVRTQLALAAAA----------AGRQAGPRPDAERGSEPSCTGTNGKWVPGRKGMAPETVPGMGMTRSAAEGDRDSCGTPVGGXXXXXXXXXXXXXXXXXXXSDRSGNRVDSSGGADVGGGAFAAAEPGCEEGELQMVPTEGGERPSPTPRNQGRDSDRCRSRGRDRKEWDRRTEQQDDHGCSGFRNAPSSEVRREPWHASSSNPXXXXXXXXXXXXXXXXXXXXXXXXXGATASCRRTNSIPALHSGGAGSSRGGAACGLPWEPGSMAAEDGLKAIETLLEKEKESLRRKMAGGD 516
            M STTT+DPTAAAAWD+EALEGGDD GRD DAPG+AS  SGRGGREVHSVCPICLG+FEEPVTLTSCLHTFCHTCILGWYEHTVAVALSR NLSAFHPERGNSNTWRGGSSN+ISG SGTS GNRDGGRKRPAPVPYRCPLCQVPGPFFLAVERPRSSS    G+R  NPKS KPSKLKFRLLGA TVFGG                      DGGTAGYPSPSM+DLRAAV+T                  A RQAGPRPDAE GSEPSCTGTNG  VPG +GMAPETVPGMGMTR AA+GDR+SCGT VG   XXXXXXXXXXX      SDRSG+RVDSSGGADVG   FAAAEPGCEEG   MVP+EGGERPSP PRN+GRDSD CRSRGR  KE DRRTEQQ DHGCSGFRNA SSEVR EPWHASS NP           XXXXXXXXXXXX  GA ASCR++NS P+LHSGGAG SRGGA+CGLPW+PGSMAAEDGL+AIE LLEKEKESLR+KMAGGD
Sbjct:   57 MNSTTTIDPTAAAAWDVEALEGGDDSGRDTDAPGNASIISGRGGREVHSVCPICLGRFEEPVTLTSCLHTFCHTCILGWYEHTVAVALSRGNLSAFHPERGNSNTWRGGSSNDISGSSGTSTGNRDGGRKRPAPVPYRCPLCQVPGPFFLAVERPRSSSFK--GKREANPKSSKPSKLKFRLLGAPTVFGGGGPVSRGVAVDEHAGGGRGKGGDGGTAGYPSPSMADLRAAVQTXXXXXXXXXXXXXXXXXXADRQAGPRPDAEGGSEPSCTGTNGMGVPGGEGMAPETVPGMGMTRGAADGDRNSCGTLVGSGSXXXXXXXXXXXGQ----SDRSGDRVDSSGGADVGEPLFAAAEPGCEEGGSPMVPSEGGERPSPVPRNRGRDSDWCRSRGRGSKERDRRTEQQGDHGCSGFRNASSSEVRGEPWHASSGNPPHSCSGDEERKXXXXXXXXXXXXRRGAIASCRQSNSKPSLHSGGAGLSRGGASCGLPWDPGSMAAEDGLQAIEILLEKEKESLRKKMAGGD 576
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BLAST of mRNA_Ecto-sp13_S_contig12959.2428.1 vs. uniprot
Match: D8LPV3_ECTSI (zf-RING_UBOX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV3_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.080e-35
Identity = 63/74 (85.14%), Postives = 69/74 (93.24%), Query Frame = 0 
Query:    1 MRSTTTLDPTAAAAWDLEALEGGDDLGRDKDAPGDASTSSGRGGREVHSVCPICLGKFEEPVTLTSCLHTFCHT 74
            M +TTT+DPTAA+AWD+EALEGGD+ GRD DAP +AS SSGRGGREVHSVCPICLGKFEEPVTLTSCLHTFCHT
Sbjct:    1 MHTTTTIDPTAASAWDVEALEGGDESGRDTDAPSNASISSGRGGREVHSVCPICLGKFEEPVTLTSCLHTFCHT 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12959.2428.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8Z2_9PHAE1.870e-24776.24RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LPV3_ECTSI2.080e-3585.14zf-RING_UBOX domain-containing protein n=1 Tax=Ect... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 51..142
e-value: 3.5E-9
score: 46.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 51..79
score: 9.244
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 51..79
e-value: 2.0E-9
score: 37.3
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 67..76
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 50..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12959contigEcto-sp13_S_contig12959:2903..4729 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12959.2428.1mRNA_Ecto-sp13_S_contig12959.2428.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12959 2580..4881 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12959.2428.1 ID=prot_Ecto-sp13_S_contig12959.2428.1|Name=mRNA_Ecto-sp13_S_contig12959.2428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=521bp
MRSTTTLDPTAAAAWDLEALEGGDDLGRDKDAPGDASTSSGRGGREVHSV
CPICLGKFEEPVTLTSCLHTFCHTCILGWYEHTVAVALSRANLSAFHPER
GNSNTWRGGSSNNISGRSGTSIGNRDGGRKRPAPVPYRCPLCQVPGPFFL
AVERPRSSSSSSTGERNVNPKSRKPSKLKFRLLGARTVFGGGGPASGGVA
VDEHAGGGRRKGGDGGTAGYPSPSMSDLRAAVRTQLALAAAAAGRQAGPR
PDAERGSEPSCTGTNGKWVPGRKGMAPETVPGMGMTRSAAEGDRDSCGTP
VGGGSSSSSSSGSSSRHNNNRQSDRSGNRVDSSGGADVGGGAFAAAEPGC
EEGELQMVPTEGGERPSPTPRNQGRDSDRCRSRGRDRKEWDRRTEQQDDH
GCSGFRNAPSSEVRREPWHASSSNPPHSCSGGEERKKRKRAQKEKEKKRR
GATASCRRTNSIPALHSGGAGSSRGGAACGLPWEPGSMAAEDGLKAIETL
LEKEKESLRRKMAGGDGTRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR027370Znf-RING_LisH
IPR017907Znf_RING_CS