mRNA_Ecto-sp13_S_contig12945.2419.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12945.2419.1
Unique NamemRNA_Ecto-sp13_S_contig12945.2419.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12945.2419.1 vs. uniprot
Match: D8LLL4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLL4_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 1.470e-62
Identity = 109/114 (95.61%), Postives = 113/114 (99.12%), Query Frame = 1
Query:    1 QVAALRAHAAEKESGLNMAREENGRLKEGMGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGSSGASDFMGGQRPPDVF 342
            +VA L+AHAAEKESGLNMAREENGRLKEG+GMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMG+SGASDFMGGQRPPDVF
Sbjct:  135 EVAVLQAHAAEKESGLNMAREENGRLKEGVGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGASDFMGGQRPPDVF 248          
BLAST of mRNA_Ecto-sp13_S_contig12945.2419.1 vs. uniprot
Match: A0A836CIB6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIB6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.180e-18
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   76 LKEGMGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAM-GSSGASDFMGGQRPPDVF 342
            ++E MG   ++LER   ENRILKRAV IQNT+ K++E QL   Q+AA  AA Y KR+EQ NYAL VRVQ M G  G       ++PPDV+
Sbjct:    1 MREAMGALARDLERFQGENRILKRAVNIQNTRCKDVEAQLGAAQEAAAAAAAYAKRVEQVNYALGVRVQQMEGMGGEGGGFMERQPPDVY 90          
BLAST of mRNA_Ecto-sp13_S_contig12945.2419.1 vs. uniprot
Match: A0A6V1NE11_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NE11_HETAK)

HSP 1 Score: 77.8 bits (190), Expect = 2.790e-13
Identity = 43/103 (41.75%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   34 KESGLNMAREENGRLKEGMGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGSSGASDFMGGQRPPDVF 342
            KE+ L+  + EN  L+  +  FQ EL+R+  EN+ILK+AV +QN+K KE E  +   +    QA +++K+LEQTNYAL + ++   +S ++     QRPPDVF
Sbjct:  113 KEASLSQFKIENASLQNQLAQFQHELQRIQEENKILKKAVNLQNSKAKESEQTIKMQEATLVQAVDHIKKLEQTNYALRIHLE---NSKSTPLTFDQRPPDVF 212          
BLAST of mRNA_Ecto-sp13_S_contig12945.2419.1 vs. uniprot
Match: K3XAW0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAW0_GLOUD)

HSP 1 Score: 72.4 bits (176), Expect = 1.450e-11
Identity = 40/80 (50.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:  103 KELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGSSGASDFMGGQRPPDVF 342
            KE+ERL +EN++LKRA+ IQN + +E + +   L+  A QAAE++KRLEQ+NYALSV +Q   S+ +  F    +PPDVF
Sbjct:  110 KEIERLQSENKLLKRAITIQNQQKEECQQENAVLRNLATQAAEHIKRLEQSNYALSVHLQTSTSTSSEHF----QPPDVF 185          
BLAST of mRNA_Ecto-sp13_S_contig12945.2419.1 vs. uniprot
Match: D0P4Q0_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P4Q0_PHYIT)

HSP 1 Score: 67.4 bits (163), Expect = 1.440e-10
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 1
Query:  115 RLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGSSGASDFMGGQRPPDVF 342
            RL  EN++LKRAV IQN + +E++ + + L+Q A QAAE++KRLEQ NY L V +Q   ++G       Q+PPDV+
Sbjct:   31 RLQGENKLLKRAVAIQNQQKEEVQNENNALKQLATQAAEHMKRLEQANYTLRVHLQTSTNAGLGH---QQQPPDVY 103          
BLAST of mRNA_Ecto-sp13_S_contig12945.2419.1 vs. uniprot
Match: A0A6A3Z7N1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Z7N1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.330e-10
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  115 RLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGSSGASDFMGGQRPPDVF 342
            RL  EN++LKRAVGIQN + +E++ + + L+Q A QAAE+++RLEQ NY L V +Q   S+G       Q+PPDV+
Sbjct:  111 RLQGENKLLKRAVGIQNQQKEEVQHENNALKQLATQAAEHMRRLEQANYTLRVHLQTSTSAGNGH---QQQPPDVY 183          
BLAST of mRNA_Ecto-sp13_S_contig12945.2419.1 vs. uniprot
Match: A0A5D6XUD9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUD9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.740e-10
Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    1 QVAALRA----HAAEKESGLNMAREENGRLKEGMGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGSSGASDFMGGQRPPDVF 342
            ++A +RA    HA +KE  L   R E  + +       ++LERL+ EN++LKRA+ IQ+ +  E + +   L+  A QAAE++KRLE +NYALSV +Q   ++  S      +PPDVF
Sbjct:   71 EIARIRAEYEQHAMKKEMELQSCRRELQQARGAAHATARDLERLAGENKLLKRAITIQSQQKDECQQENAVLRNLATQAAEHIKRLEASNYALSVHLQTSTNAATSSRF---QPPDVF 185          
BLAST of mRNA_Ecto-sp13_S_contig12945.2419.1 vs. uniprot
Match: G4ZQH3_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZQH3_PHYSP)

HSP 1 Score: 67.4 bits (163), Expect = 7.650e-10
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  106 ELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGSSGASDFMGGQRPPDVF 342
            E+ RL  EN++LKRAV IQN + + +E +   L+Q A QAAE+++RLEQ NY L V +Q   S+G       Q+PPDV+
Sbjct:  102 EVARLQGENKLLKRAVNIQNEQNQAMEQENTALKQLATQAAEHIRRLEQANYTLRVHLQTSTSAGLGH---QQQPPDVY 177          
BLAST of mRNA_Ecto-sp13_S_contig12945.2419.1 vs. uniprot
Match: A0A7S2LD89_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LD89_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.530e-9
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   76 LKEGMGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGSSGASDFMGGQRPPDVF 342
            LK   G  Q + +++  ENRILKRAV IQ  +  ++  +L G +    QA E ++RLEQ N  L  ++QA  SS  +DFMG  RPPDV+
Sbjct:  152 LKSENGSLQTQNQKVEHENRILKRAVTIQQDRQHQVSAELEGARTFKEQAEERIRRLEQMNLTLQYQMQAQNSSAGNDFMG-LRPPDVY 239          
BLAST of mRNA_Ecto-sp13_S_contig12945.2419.1 vs. uniprot
Match: W4FGH9_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FGH9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.760e-9
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   34 KESGLNMAREENGRLKEGMGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGSSGAS 306
            KE  +   R E  RL+E      KE E++ AEN+IL+RAV IQN + +E   +   L+Q A QAA+++KRLEQTNYAL V +    + GA+
Sbjct:   88 KEKDMQEMRVEFDRLREMCMGQAKEFEKIQAENKILRRAVTIQNQQKEEATQENVALKQLAHQAADHIKRLEQTNYALRVHLHTSSAGGAA 178          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12945.2419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLL4_ECTSI1.470e-6295.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CIB6_9STRA4.180e-1853.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1NE11_HETAK2.790e-1341.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K3XAW0_GLOUD1.450e-1150.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
D0P4Q0_PHYIT1.440e-1047.37Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A6A3Z7N1_9STRA3.330e-1048.68Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A5D6XUD9_9STRA4.740e-1038.98Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
G4ZQH3_PHYSP7.650e-1046.84Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A7S2LD89_9STRA1.530e-943.82Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
W4FGH9_9STRA1.760e-945.05Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12945contigEcto-sp13_S_contig12945:2940..4765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score74.7
Seed ortholog evalue2.7e-11
Seed eggNOG ortholog42099.EPrPV00000021181
Model size952
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Source PGD
EggNOG OGs1MF8R@121069,2E7H6@1,2SE34@2759
Cds size294
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462692.4440453-UTR-Ecto-sp13_S_contig12945:2939..35461681462692.4440453-UTR-Ecto-sp13_S_contig12945:2939..3546Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12945 2940..3546 -
1681462692.4738092-UTR-Ecto-sp13_S_contig12945:4714..47651681462692.4738092-UTR-Ecto-sp13_S_contig12945:4714..4765Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12945 4715..4765 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462692.456881-CDS-Ecto-sp13_S_contig12945:3546..37111681462692.456881-CDS-Ecto-sp13_S_contig12945:3546..3711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12945 3547..3711 -
1681462692.4653437-CDS-Ecto-sp13_S_contig12945:4585..47141681462692.4653437-CDS-Ecto-sp13_S_contig12945:4585..4714Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12945 4586..4714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12945.2419.1prot_Ecto-sp13_S_contig12945.2419.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12945 3547..4714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12945.2419.1

>prot_Ecto-sp13_S_contig12945.2419.1 ID=prot_Ecto-sp13_S_contig12945.2419.1|Name=mRNA_Ecto-sp13_S_contig12945.2419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
MAREENGRLKEGMGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHG
LQQAAGQAAEYVKRLEQTNYALSVRVQAMGSSGASDFMGGQRPPDVF*
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mRNA from alignment at Ecto-sp13_S_contig12945:2940..4765-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12945.2419.1 ID=mRNA_Ecto-sp13_S_contig12945.2419.1|Name=mRNA_Ecto-sp13_S_contig12945.2419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1826bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12945:2940..4765- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTGCAGCCCTGCGGGCGCACGCGGCCGAGAAGGAGAGCGGTCTCAA CATGGCTCGCGAGGAAAACGGTCGGCTGAAGGAAGGCATGGGGATGTTCC AAAAGGAGCTCGAGCGACTCTCCGCGGAGAACCGTATCCTCAAGCGTGCC GTCGGGATCCAAAACACCAAGGGCAAGGAGGTGGGTTTGAGTTTGGGTAA GAAAACGGCTGCGGGGCCAATGTTAAAGTGGGAGGAGGAACAAGAGAGTG GTTGAAGACGGGAAGAAGCTGACCGATTGGTGCGTGTGGGGGTCCATACG CCGACCACGGACGATCCAACATGGATCAGCAGCAGCCCCCGACATTGCAG TAGTAGTCCATGCCGAACGTCGCAGGGGTCGCCCGCGCATACCCTCGGCG GACACTGCGGAAAGGGCGGCGGCACAAGGAGTTTTCCGTCATCGATACAT ACCCCACACTGATTCTTCTCAGCCACGACCACTCCATTAGTTTCCTCCAT GACTGATGACGGGATGCGATGCGACCCAAACAGCGCGTCGCCTCCCGTTG TCAGTCCTCGTGGAAAACAGATGGAGAGCTCGTGGCTCAGGAGCGGCAGC GCGGGAGATGACGGGAGACTTGATATGCCGTGGCCCCTTTTCAGGAGCGT TGGCATCAGTGGCCGAGAGGGTTTTTGCGCGAGTTAGCCCAGCAGCGGCG TTGTTGAGGATCCTCCTCCGTTGGCATGCATGCACGAACACTGCGTCCAT GGGAGGCAGCGGGGCGAGCAATCGTGGCTGGCTACCAATCATGTCCTCTA ATATCTTGCCCGGGTTGACCGTTATTTGGTGTGTCGGCCCTAGCAGACGT TCACACTTCCCCCCGTCACCCGCCTGGAGTCTGCCCAACCATTCGTCGTT GTACTGCTACGGTTTGCCCTCCATGGGACACGTCACTTATGCCGTCCCCT CCGTTTGCTGCTTCTTCAAGTGCGATTGTGCGAAACGTAATTTTGACTCG TCTTTCCTCTATTTGTATGCGTGCGCACACCTCTTTGCCTCTTAATTTTT GCAGCTGGAGGGCCAGCTGCACGGGCTCCAGCAGGCGGCGGGGCAGGCGG CGGAGTACGTGAAGCGGCTCGAGCAGACGAACTACGCCCTCTCCGTGCGC GTGCAGGCCATGGGAAGCTCGGGGGCGAGCGACTTCATGGGCGGCCAGCG CCCCCCGGACGTGTTTTGAGTTTCCAACTACGCGTGCGCGTTGAAGGCGG CGACGGCGATGTCGGGGGCCGGTCGGCGTGACGTCACAGAGGGAGTGAGG GACGGCGAAAGAGTGCTGTCGTCGTGCGCCTTTTCATAACTGTGCGGCCA GGCTTGAGAGGGAAGACGCAAACGGAGGGTAGGGGTGCTGCAACATTGAT GCTCTTCTGCGCCTCGCGCGGTGTTTCTAGATTCGAAGGCAGGTGGGAGG GCGGGCGTGGGTGGGTTGTCGACCGTGAAGTTTGTACCAACCGCGCCTTC CCCCCCCCCCTACATGCTACCGCTGGTGCAGTTGAACAGTTAAGACGCTG CTGTTACCGGTGGCCTCGTGGCCTTTTTATTTCTCTGGGCACTACACAGC GACGGTTTGATCTTCGGTAAGGAGGAGATGTTATCTACTGAGGTCCGACG AATCGCGCGAGTAATATGATGTCGATGACTGGTGTGGCTTGGCGATGTTT GTCAGTAGAGAAGGGCAAGCAAAACTGTTGCGTGTGGTCGCGATAGGCGT GCGAAAGGCTGGTGGTTCGAACAATTTCGTGTCTGCCCCTCTTGTCCCAA CCCCCGTGGTCGTTGGAGGGAGCGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12945:2940..4765-

>mRNA_Ecto-sp13_S_contig12945.2419.1 ID=mRNA_Ecto-sp13_S_contig12945.2419.1|Name=mRNA_Ecto-sp13_S_contig12945.2419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12945:2940..4765- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCGCGAGGAAAACGGTCGGCTGAAGGAAGGCATGGGGATGTTCCA
AAAGGAGCTCGAGCGACTCTCCGCGGAGAACCGTATCCTCAAGCGTGCCG
TCGGGATCCAAAACACCAAGGGCAAGGAGCTGGAGGGCCAGCTGCACGGG
CTCCAGCAGGCGGCGGGGCAGGCGGCGGAGTACGTGAAGCGGCTCGAGCA
GACGAACTACGCCCTCTCCGTGCGCGTGCAGGCCATGGGAAGCTCGGGGG
CGAGCGACTTCATGGGCGGCCAGCGCCCCCCGGACGTGTTTTGA
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