prot_Ecto-sp13_S_contig102166.241.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig102166.241.1
Unique Nameprot_Ecto-sp13_S_contig102166.241.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length92
Homology
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BLAST of mRNA_Ecto-sp13_S_contig102166.241.1 vs. uniprot
Match: A0A6H5L6M6_9PHAE (DNA-directed primase/polymerase protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M6_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.150e-42
Identity = 78/92 (84.78%), Postives = 82/92 (89.13%), Query Frame = 0 
Query:    1 HDSLVVPVAPRSSPAERFLTVGGGAGQHRYSRFGNFRNQTGVCSSSQQRQQHGWSTNGTISAERDGHRGSSQDHGCDSSDGDGWRVSSQGFG 92
            HDSLVVP  PR+SPAERFLTVGGGAGQHRYSRFG+ RNQ G CSS QQRQQHGWST  T+SAERDGHRGSSQ HGC SSDGDGWRVS+QGFG
Sbjct:  258 HDSLVVPATPRTSPAERFLTVGGGAGQHRYSRFGSSRNQAGDCSSLQQRQQHGWSTASTMSAERDGHRGSSQHHGCGSSDGDGWRVSTQGFG 349
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BLAST of mRNA_Ecto-sp13_S_contig102166.241.1 vs. uniprot
Match: D8LSB0_ECTSI (DNA-directed primase/polymerase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB0_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 5.320e-42
Identity = 81/92 (88.04%), Postives = 82/92 (89.13%), Query Frame = 0 
Query:    1 HDSLVVPVAPRSSPAERFLTVGGGAGQHRYSRFGNFRNQTGVCSSSQQRQQHGWSTNGTISAERDGHRGSSQDHGCDSSDGDGWRVSSQGFG 92
            HDSLVVPV PRSSPAE FLTVGGG GQHRYSRFG+ R QTG CSSSQQRQQHGWSTNGTISAER  HRGSSQDHG  SSDGDGWRVSSQGFG
Sbjct: 1008 HDSLVVPVTPRSSPAELFLTVGGGTGQHRYSRFGSCRKQTGDCSSSQQRQQHGWSTNGTISAERGEHRGSSQDHGSGSSDGDGWRVSSQGFG 1099
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig102166.241.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6M6_9PHAE1.150e-4284.78DNA-directed primase/polymerase protein n=1 Tax=Ec... [more]
D8LSB0_ECTSI5.320e-4288.04DNA-directed primase/polymerase protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig102166contigEcto-sp13_S_contig102166:39..314 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig102166.241.1mRNA_Ecto-sp13_S_contig102166.241.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig102166 39..315 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig102166.241.1 ID=prot_Ecto-sp13_S_contig102166.241.1|Name=mRNA_Ecto-sp13_S_contig102166.241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
HDSLVVPVAPRSSPAERFLTVGGGAGQHRYSRFGNFRNQTGVCSSSQQRQ
QHGWSTNGTISAERDGHRGSSQDHGCDSSDGDGWRVSSQGFG
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