mRNA_Ecto-sp13_S_contig102166.241.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig102166.241.1 vs. uniprot
Match: A0A6H5L6M6_9PHAE (DNA-directed primase/polymerase protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M6_9PHAE) HSP 1 Score: 154 bits (389), Expect = 1.150e-42 Identity = 78/92 (84.78%), Postives = 82/92 (89.13%), Query Frame = 1 Query: 1 HDSLVVPVAPRSSPAERFLTVGGGAGQHRYSRFGNFRNQTGVCSSSQQRQQHGWSTNGTISAERDGHRGSSQDHGCDSSDGDGWRVSSQGFG 276
HDSLVVP PR+SPAERFLTVGGGAGQHRYSRFG+ RNQ G CSS QQRQQHGWST T+SAERDGHRGSSQ HGC SSDGDGWRVS+QGFG
Sbjct: 258 HDSLVVPATPRTSPAERFLTVGGGAGQHRYSRFGSSRNQAGDCSSLQQRQQHGWSTASTMSAERDGHRGSSQHHGCGSSDGDGWRVSTQGFG 349
BLAST of mRNA_Ecto-sp13_S_contig102166.241.1 vs. uniprot
Match: D8LSB0_ECTSI (DNA-directed primase/polymerase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB0_ECTSI) HSP 1 Score: 155 bits (392), Expect = 5.320e-42 Identity = 81/92 (88.04%), Postives = 82/92 (89.13%), Query Frame = 1 Query: 1 HDSLVVPVAPRSSPAERFLTVGGGAGQHRYSRFGNFRNQTGVCSSSQQRQQHGWSTNGTISAERDGHRGSSQDHGCDSSDGDGWRVSSQGFG 276
HDSLVVPV PRSSPAE FLTVGGG GQHRYSRFG+ R QTG CSSSQQRQQHGWSTNGTISAER HRGSSQDHG SSDGDGWRVSSQGFG
Sbjct: 1008 HDSLVVPVTPRSSPAELFLTVGGGTGQHRYSRFGSCRKQTGDCSSSQQRQQHGWSTNGTISAERGEHRGSSQDHGSGSSDGDGWRVSSQGFG 1099 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig102166.241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig102166.241.1 >prot_Ecto-sp13_S_contig102166.241.1 ID=prot_Ecto-sp13_S_contig102166.241.1|Name=mRNA_Ecto-sp13_S_contig102166.241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp HDSLVVPVAPRSSPAERFLTVGGGAGQHRYSRFGNFRNQTGVCSSSQQRQback to top mRNA from alignment at Ecto-sp13_S_contig102166:39..315+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig102166.241.1 ID=mRNA_Ecto-sp13_S_contig102166.241.1|Name=mRNA_Ecto-sp13_S_contig102166.241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=277bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102166:39..315+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig102166:39..315+ >mRNA_Ecto-sp13_S_contig102166.241.1 ID=mRNA_Ecto-sp13_S_contig102166.241.1|Name=mRNA_Ecto-sp13_S_contig102166.241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102166:39..315+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |