mRNA_Ecto-sp13_S_contig12926.2406.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12926.2406.1
Unique NamemRNA_Ecto-sp13_S_contig12926.2406.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12926.2406.1 vs. uniprot
Match: A0A6H5K735_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K735_9PHAE)

HSP 1 Score: 402 bits (1033), Expect = 1.820e-138
Identity = 201/217 (92.63%), Postives = 205/217 (94.47%), Query Frame = 1 
Query:    1 VATECTTVIISSAGDESRSMPVDLSGMYYDVGMTLENRPVFFSSNDTATSESVMYWTGGVSIAIEGGPDFGRQRHLTNNAQPTGDGVDNDGDTLVLSGRGHGESVVAREEEGRALAACDSGGWILRESDGGYPAYMVFDCANHPVDISSGVWYRIPSRGDSAETMDASFAVVCLDPENNGGPSPASSDMTNSPAVEIVGFATVSPGATVEVEDVFDR 651
            +ATECTTV+ISSAGDESRSMPVDLSGMYYDVGMTLENRPVFFS+NDTATSESVMYWTGGVSIA+EG PDF RQRHLTN AQP GDGV NDGDTL LSGRGH  SVVAREE GRALAACDSGGWILRESDGGYPAYMVFDCA HPVDISSGVWYRIPSRGDSAETMDASFAVVCLDPE NGGPSPASSDMTNSPAVEIVGF TVSPGATVEVEDVFDR
Sbjct:   13 LATECTTVVISSAGDESRSMPVDLSGMYYDVGMTLENRPVFFSTNDTATSESVMYWTGGVSIAVEGEPDFSRQRHLTNYAQPRGDGVVNDGDTLALSGRGHRGSVVAREE-GRALAACDSGGWILRESDGGYPAYMVFDCAYHPVDISSGVWYRIPSRGDSAETMDASFAVVCLDPEGNGGPSPASSDMTNSPAVEIVGFPTVSPGATVEVEDVFDR 228
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BLAST of mRNA_Ecto-sp13_S_contig12926.2406.1 vs. uniprot
Match: D7FXK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK4_ECTSI)

HSP 1 Score: 393 bits (1010), Expect = 5.310e-135
Identity = 195/217 (89.86%), Postives = 203/217 (93.55%), Query Frame = 1 
Query:    1 VATECTTVIISSAGDESRSMPVDLSGMYYDVGMTLENRPVFFSSNDTATSESVMYWTGGVSIAIEGGPDFGRQRHLTNNAQPTGDGVDNDGDTLVLSGRGHGESVVAREEEGRALAACDSGGWILRESDGGYPAYMVFDCANHPVDISSGVWYRIPSRGDSAETMDASFAVVCLDPENNGGPSPASSDMTNSPAVEIVGFATVSPGATVEVEDVFDR 651
            +ATECTTV+ISSAGDESRSMPVDLSGMYYDVGMTL+NRPVFFS+NDTATSESVMYWTGGVSIAIEG PDFGRQRHLTNNAQP GD   NDGD L LS RG G SV AREEEGRALAACDSGGWILRESDGGYPAYMVFDCA+HPVDISSGVWY+IPSRGDSAETMDASFA VCL+ ENN GPSPASS+MTNSPAVEIVGFATVSPGATVEVEDVFDR
Sbjct:   13 LATECTTVVISSAGDESRSMPVDLSGMYYDVGMTLDNRPVFFSTNDTATSESVMYWTGGVSIAIEGEPDFGRQRHLTNNAQPRGD---NDGDALALSARGRGGSVAAREEEGRALAACDSGGWILRESDGGYPAYMVFDCASHPVDISSGVWYKIPSRGDSAETMDASFAAVCLNSENNDGPSPASSEMTNSPAVEIVGFATVSPGATVEVEDVFDR 226
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12926.2406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K735_9PHAE1.820e-13892.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXK4_ECTSI5.310e-13589.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12926contigEcto-sp13_S_contig12926:1..3823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size651
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_002040.1
Cds size651
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462691.585354-CDS-Ecto-sp13_S_contig12926:0..1371681462691.585354-CDS-Ecto-sp13_S_contig12926:0..137Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12926 1..137 -
1681462691.594032-CDS-Ecto-sp13_S_contig12926:1431..15371681462691.594032-CDS-Ecto-sp13_S_contig12926:1431..1537Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12926 1432..1537 -
1681462691.60225-CDS-Ecto-sp13_S_contig12926:1936..21451681462691.60225-CDS-Ecto-sp13_S_contig12926:1936..2145Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12926 1937..2145 -
1681462691.6106672-CDS-Ecto-sp13_S_contig12926:3057..31821681462691.6106672-CDS-Ecto-sp13_S_contig12926:3057..3182Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12926 3058..3182 -
1681462691.6215787-CDS-Ecto-sp13_S_contig12926:3749..38231681462691.6215787-CDS-Ecto-sp13_S_contig12926:3749..3823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12926 3750..3823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12926.2406.1prot_Ecto-sp13_S_contig12926.2406.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12926 1..3823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12926.2406.1

>prot_Ecto-sp13_S_contig12926.2406.1 ID=prot_Ecto-sp13_S_contig12926.2406.1|Name=mRNA_Ecto-sp13_S_contig12926.2406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=217bp
VATECTTVIISSAGDESRSMPVDLSGMYYDVGMTLENRPVFFSSNDTATS
ESVMYWTGGVSIAIEGGPDFGRQRHLTNNAQPTGDGVDNDGDTLVLSGRG
HGESVVAREEEGRALAACDSGGWILRESDGGYPAYMVFDCANHPVDISSG
VWYRIPSRGDSAETMDASFAVVCLDPENNGGPSPASSDMTNSPAVEIVGF
ATVSPGATVEVEDVFDR
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mRNA from alignment at Ecto-sp13_S_contig12926:1..3823-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12926.2406.1 ID=mRNA_Ecto-sp13_S_contig12926.2406.1|Name=mRNA_Ecto-sp13_S_contig12926.2406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3823bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12926:1..3823- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCGACGGAGTGTACCACTGTCATCATCTCCAGCGCGGGTGATGAGTC
GAGGTCGATGCCGGTGGACCTCAGGTATCTGACTTATCCATCTACCGGTC
GTGACACATCATTTCACACCCCCCCCGGACCGATTTTCATGCTCGATTTG
TTTCACGACGAAGAGGATGCATATGTAGCACCAGTTGGTAGGTGCGTTTT
CGAGAAGGGTCTCGCCGAGACGGTTCCAACACCGCCATGTTCGGCACTGC
CACACCGTTGCGGAGTAATCGAGCTTTGAATAATGGTCCAGGGGGTGTGA
TATCTTACGTCATATGACCTACAGCTGTTGTTCATTGGTTACACACCCGA
TGCCAAAGTAGAAAATCCACCCCGTCCCTGAGGGACAACGGCAAGCAGTC
TTGTTTTGGCGGAGGTCGTTGCTCGGGGGGGGTCCGTCGAATGTTGATGC
AAGCGTTCATGAATATTCAGGCGTTACATGTAGCAACACCCCGAGCAGTG
CTCCCTACTGTACCCACCATATCGATCCTCGACCGCGTGCAGCCGCTGCT
TGATCAGCTCCCAGCATGGAAGGAACGTTCACAATGGTCGCTGCGCACAA
CACGCCCTTGCTCTGTTATTTTTTTCCCGTTGATGACGCAGCGGGATGTA
TTACGACGTGGGCATGACGTTGGAGAACAGGCCGGTGTTCTTCAGCTCCA
ACGACACCGCCACCAGCGAGAGCGTCATGTACTGGACGGGCGGGGTATCG
ATCGCCATTGAAGGAGGTCGGTGCTTTGTGGTACCGTGGGTGTGACGCAG
GATTCCACAAACCCTGGAGCCGACTTTTGAACCTCCGTAGGTGAAATAGA
AGGTACCATGTCGCCTGGACAGGTTTTTGAACCTCGACTTCTGTGCAGCG
ATAATGGCGGCGAGGGTGCCGAAGCTTGTGGGCGCCTCGTCGAGAGCTTT
CCGATTGTGCATCATTTGACGGAGGAACAATCGAGCTGTCGGGGGGGCTT
TTTGAGCCCCCTCCTCTTGGGGACGATTTGGGGGGGGGAGGGGGGGGCTT
TTGGGGGGGGCCCGGGGTGTTTTTTTTTTTTTTCGACCCACGGTGTTGTC
TTGCAAGTGTGTTTGGAGCGAAGATTTAGCATGTTTGTGAGTACACGCAA
CAGCAAGGGAAGGGTCGTAAGCTGGTAAGGTAACGAACGCTCTCTCGCGT
CGAAAATGGAAGGTCAGTACCACAGGAGCAAAGACGGGAGAACATGTAGT
TCCTGTGTAACCCCGCGGGCGGTGGATCAAATGTATCCCCAAAGGTGTGA
CTGCCGTCCAACACAGATATGACAAAAAAAAGCAGAGAATACTTGACGGG
TTTTGGTCCTTATGGCCGGAAGGAACCCTTTTCCCCTGGATTTGACACCT
CACAAAATGCCGGTGTTTCTTACCTCTCTCCCCGGTTTTTGCCAGAATAT
GCTATATTCGGTGGGAAGCGTTGCCGACCAGTGTCGTCCCATCCCTAGAG
AAACGTCACCCCCTCTCCCTGTATCTATGTGTCTCTCCCTCTTCCTCTCT
TTGTTCATGTTTCCCTGTCTCTTGTCAATGTCTGTCTATCTCCGTGCTGT
CCGTCTGCTTCTCTACCCTCCCTCGCCCTCTCTTTGTTGCTGTACACTTG
CTTTTCTGCTTTCCCGTTCCGAGATCAGGACCGGACTTCGGCAGGCAGCG
CCACCTAACGAACAACGCACAACCAACGGGCGACGGCGTGGACAACGACG
GTGACACTCTTGTCCTATCGGGGCGAGGGCACGGAGAAAGCGTGGTCGCA
CGGGAAGAAGAGGGTCGCGCTCTCGCTGCGTGCGATAGCGGCGGCTGGAT
TTTGCGGGAAAGCGATGGAGGTTACCCCGCCTACATGGTGAGCGCAAAGG
GAGTGACGATATTTTGTTAGGTTTCGTCGAATCATTTGTGGCGCGTCGTG
TGGGCCGAACTGTTGCCGATTTTCCGGTCCCGAAGCAAAGGCTGTACCGA
TGGCGGTTTTCGGATGTTGAGACTGCGTTGTTGAAGCTCCTCGCGATTGG
TCGCCGCCAGAATGTTGGGGTGCGTGCGTAATATATGCCAGGGCCGTGAA
CAGAATCGTTCGCAATCCCGATAACATCACCACCCTTCGGTTGTCCCACA
AGTCTTTTTGTGACGTGCGCAGTACATGTATTTCAACAGTTTTCAGTGTA
CCTTTTTCGTCCTGTTCATATCATTCACCTGATTTCCGTGTACCCTTTTC
GCTCTGTTTTGTCTTGTTTTTCTGTTGTCTTTTCAGGTCTTCGACTGCGC
CAACCACCCGGTTGACATCTCCAGCGGGGTGTGGTACAGGATCCCATCGA
GAGGCGACTCCGCGGAGACGATGGATGCTTCCTTCGCCGTGGGTGAGAAC
ACGAACGGAAAACGTGGACGGTTGTTGTTTCACGGTGTACGCTATATAGC
CTCCGGCTTACGCTGTAGCCTCCGGCGGGCGTAAAGGTTGAACAACCCCC
TAGCGTAGTGCCCGGAACTCGCTGCAGTGCCGTGCAACTGCGCCGCAGTG
CCTGCATCTCTTCGCGCGACACGTATAACCGTGGCGTGCCGAGGATGCGA
GGCTGCCAGCGCGAGAACCATCACCAGCTGCGACACTTCCTTCCCCTTCC
GTCCCCTTGCGCAGAACACTCCCATAGTATATTTCAATCAACGAGATAGA
CAGGCGGTTGGAGCGGAGATACTTTCATGGCACAGGGGAAACGTCTGAGA
CAAAAAATGGGTATATCAGAAGGCAAACCTCGGGATGGGGTGGTATAGGG
CGCTGACTTGCGGTACGAAAAGGGCAGGTTCATTCGTGAAACTAACAATA
TTCAGGGTTGGGGTGGGCAGCTAGGCGATGGCGCCTAGCCCCCAAAACCG
TGAGCCACCGACCAATCACCAAGGCCCCTTGCCGTCGAACTAGGGAGGCG
TGTCTGTGTTTTCTCGCTGCTGTGCGATATAATTTTGTTGTTGATGTTTG
ATTCGGGGGCTTCGTGATACGATGGTATTTATTTTTTTCTTTGAGAGGGA
CTAGTTTTTATTGACCGGCTATGTATGTATGGGAATGTAGGTGTGTTGTT
ACTGGTTTTGTTTCCACCGGCGTCGAGACTCAATATTTTGCTACAGGTTG
GCGTTGCGTCAAAACCAAGGCAAGCACCGAAGGGAGATGGGCTGGGAGCC
ATAAAACAAAGAAATGCAAAAATGCTCCTGTGTGACCTTCTCATGGGTGA
CCCTGTCTGATGCGTCAAGCATACACGCCGAATGGCCAGTAATCCAGCCC
CAGAATAGATGGGACGAACACACACATAATCACGCACATGGTCTTGTTGC
CCAATATTTACGTCCCACTATTTGCGCCGGGGAGGAAGTGCTATTTCGTC
GTTATTCGGTTGATTTCGTACGGAGCGTCCCTTTCTCGGTGCATAGGTCA
AAACGCTCAGGTCTTGTTGTTCCCTCTGCATGATGATGAGCGGTGAGTGG
TGATGAGGTGTGCAGAGAATCCTCGGTCGCCTACCAAGACAAGGCAGTTA
CTTCTAAATAATAGGGTTTGTCCTTGATTCCAAGCCCACGTACCCCTCAC
CGGAGACAGAAGCATGCCTCGTTGCGGCGTATACCCTCAGCCCCCGTGAC
CCGGTTCTGTCCATTGCCCCCCTGTCTCCTTTGCAGTGTGTTTGGATCCA
GAGAACAACGGCGGACCTAGCCCGGCGTCGAGCGACATGACCAACTCGCC
TGCGGTCGAGATTGTGGGCTTCGCGACGGTCTCTCCGGGGGCCACGGTAG
AGGTGGAAGACGTGTTCGATCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12926:1..3823-

>mRNA_Ecto-sp13_S_contig12926.2406.1 ID=mRNA_Ecto-sp13_S_contig12926.2406.1|Name=mRNA_Ecto-sp13_S_contig12926.2406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=651bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12926:1..3823- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCGACGGAGTGTACCACTGTCATCATCTCCAGCGCGGGTGATGAGTC
GAGGTCGATGCCGGTGGACCTCAGCGGGATGTATTACGACGTGGGCATGA
CGTTGGAGAACAGGCCGGTGTTCTTCAGCTCCAACGACACCGCCACCAGC
GAGAGCGTCATGTACTGGACGGGCGGGGTATCGATCGCCATTGAAGGAGG
ACCGGACTTCGGCAGGCAGCGCCACCTAACGAACAACGCACAACCAACGG
GCGACGGCGTGGACAACGACGGTGACACTCTTGTCCTATCGGGGCGAGGG
CACGGAGAAAGCGTGGTCGCACGGGAAGAAGAGGGTCGCGCTCTCGCTGC
GTGCGATAGCGGCGGCTGGATTTTGCGGGAAAGCGATGGAGGTTACCCCG
CCTACATGGTCTTCGACTGCGCCAACCACCCGGTTGACATCTCCAGCGGG
GTGTGGTACAGGATCCCATCGAGAGGCGACTCCGCGGAGACGATGGATGC
TTCCTTCGCCGTGGTGTGTTTGGATCCAGAGAACAACGGCGGACCTAGCC
CGGCGTCGAGCGACATGACCAACTCGCCTGCGGTCGAGATTGTGGGCTTC
GCGACGGTCTCTCCGGGGGCCACGGTAGAGGTGGAAGACGTGTTCGATCG
T
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