mRNA_Ecto-sp13_S_contig12900.2390.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12900.2390.1
Unique NamemRNA_Ecto-sp13_S_contig12900.2390.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12900.2390.1 vs. uniprot
Match: D7FZZ3_ECTSI (Pepsinogen n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ3_ECTSI)

HSP 1 Score: 452 bits (1164), Expect = 6.130e-155
Identity = 211/233 (90.56%), Postives = 223/233 (95.71%), Query Frame = 1
Query:    1 PCAREKPSHMLFGSYDLSIVSEGAAWHYTPVIRHSRGELRYWTVKMTAMTMVTSSPLVVTAEEEATAGEQPADGYEIPPLGGSEDIDLCSSGCYAIVDTGTSGIAIPEDYFYTLAEQITEASGASCKGTTCYNTKGSDFPDLMFELYPSNKFILRGEDYTVCSRWGVCVVKLQPSFGGDFWILGDVFIEAYYTLFDVENLRVGFACTGNGCSGGTWHGQGGFMEIEDQASWRR 699
            P   EKP+HMLFGSYDLSI+SEGA WHYTP+I HSRG+L+YWTVKMTAM MVTSSPL  TAEEEA+AGEQPA+GYEIP LGGSE+ +LCSSGCYAIVDTGTSGIA+PEDYFYTLAEQITEASGASCKGTTCY+TKGSDFPDLMFELYPSNKFILRGEDYTVCSRWGVCVVKLQPSFGG+FWILGDVFIEAYYTLFDVENLRVGFACTGNGCSGGTWHGQGGFMEIEDQASWRR
Sbjct:  261 PSDTEKPNHMLFGSYDLSILSEGAPWHYTPLIPHSRGQLKYWTVKMTAMAMVTSSPLADTAEEEASAGEQPAEGYEIPYLGGSEEGNLCSSGCYAIVDTGTSGIAVPEDYFYTLAEQITEASGASCKGTTCYSTKGSDFPDLMFELYPSNKFILRGEDYTVCSRWGVCVVKLQPSFGGNFWILGDVFIEAYYTLFDVENLRVGFACTGNGCSGGTWHGQGGFMEIEDQASWRR 493          
BLAST of mRNA_Ecto-sp13_S_contig12900.2390.1 vs. uniprot
Match: A0A6H5LLK6_9PHAE (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLK6_9PHAE)

HSP 1 Score: 447 bits (1149), Expect = 2.710e-154
Identity = 212/232 (91.38%), Postives = 220/232 (94.83%), Query Frame = 1
Query:    1 PCAREKPSHMLFGSYDLSIVSEGAAWHYTPVIRHSRGELRYWTVKMTAMTMVTSSPLVVTAEEEATAGEQPADGYEIPPLGGSEDIDLCSSGCYAIVDTGTSGIAIPEDYFYTLAEQITEASGASCKGTTCYNTKGSDFPDLMFELYPSNKFILRGEDYTVCSRWGVCVVKLQPSFGGDFWILGDVFIEAYYTLFDVENLRVGFACTGNGCSGGTWHGQGGFMEIEDQASWR 696
            P   EKPSHMLFGSYDLSIVSEGAAWHYTPVIRHSRG+LRYWTVKMTAM MVTSSPL  TAEEEATA EQPA+GYEIP LGGS +I+LCSSGCYAIVDTGTSGIA+PEDYFYTLAEQITEASGASCKGTTCY TKGSDFPDLMFELYPSN+FILRGEDYTVC+R G+CVVKLQPSFGGDFWILGDVFIEAYYTLFD ENLRVGFACTGNGCSGGTWHGQGGFMEIEDQASWR
Sbjct:  167 PSDTEKPSHMLFGSYDLSIVSEGAAWHYTPVIRHSRGQLRYWTVKMTAMAMVTSSPLADTAEEEATA-EQPAEGYEIPHLGGSAEINLCSSGCYAIVDTGTSGIAVPEDYFYTLAEQITEASGASCKGTTCYGTKGSDFPDLMFELYPSNRFILRGEDYTVCNRRGLCVVKLQPSFGGDFWILGDVFIEAYYTLFDAENLRVGFACTGNGCSGGTWHGQGGFMEIEDQASWR 397          
BLAST of mRNA_Ecto-sp13_S_contig12900.2390.1 vs. uniprot
Match: A0A7S2UUR2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUR2_9STRA)

HSP 1 Score: 272 bits (696), Expect = 2.040e-88
Identity = 126/231 (54.55%), Postives = 154/231 (66.67%), Query Frame = 1
Query:    1 PCAREKPSHMLFGSYDLSIVSEGAAWHYTPVIRHSRGELRYWTVKMTAMTMVTSSPLVVTAEEEATAGEQPADGYEIPPLGGSEDIDLCSSGCYAIVDTGTSGIAIPEDYFYTLAEQITEASGASCKGTTCYNTKGSDFPDLMFELYPSNKFILRGEDYTVCSRWGVCVVKLQPSFGGDFWILGDVFIEAYYTLFDVENLRVGFACTGNGCSGGTWHGQGGFMEIEDQASW 693
            P   +KPSH+ FG YDL+IVS  A WHYTPVIR S G+ +YWTVKM  + ++                         P +  S    +CS+GCYAIVDTGTSGIAIPE Y+Y +   IT+  G  C+G TCYN + +DFPDL F L P N+  LR EDY  CSRWG CV K+QPS+GG +WI+GDVF+EAYYTLFD+EN+RVGFAC G  CSGG WHG+GGF+E+ED   W
Sbjct:   62 PRDHDKPSHLWFGGYDLNIVSANATWHYTPVIRRSYGDFKYWTVKMLGLEILNG-----------------------PAMPSSIRAQMCSTGCYAIVDTGTSGIAIPEIYYYDVVNYITQ--GLHCRGITCYNAQVTDFPDLTFTLSPDNELPLRAEDYVTCSRWGECVFKIQPSYGGAYWIMGDVFMEAYYTLFDIENMRVGFACAGK-CSGGDWHGKGGFLEVEDSQEW 266          
BLAST of mRNA_Ecto-sp13_S_contig12900.2390.1 vs. uniprot
Match: A0A7S4DAX8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAX8_HETAK)

HSP 1 Score: 276 bits (706), Expect = 3.150e-87
Identity = 132/231 (57.14%), Postives = 157/231 (67.97%), Query Frame = 1
Query:    1 PCAREKPSHMLFGSYDLSIVSEGAAWHYTPVIRHSRGELRYWTVKMTAMTMVTSSPLVVTAEEEATAGEQPADGYEIPPLGGSEDIDLCSSGCYAIVDTGTSGIAIPEDYFYTLAEQITEASGASCKGTTCYNTKGSDFPDLMFELYPSNKFILRGEDYTVCSRWGVCVVKLQPSFGGDFWILGDVFIEAYYTLFDVENLRVGFACTGNGCSGGTWHGQGGFMEIEDQASW 693
            P   +KPSH+ FG YDLSIVSE A WHYTPVIR S G+ +YWTVKM  + ++++  L V A                         D+CSSGCYAIVDTGTSGIAIPE Y+Y +   ITE  G  C+G TCYN + SDFPDL F L P N+  LR  DY  CSRWG CV K+QPS+GG +WILGDVF+EAYYTLFDVEN+RVGFAC G  C+GG WHG+GGF+E+E+   W
Sbjct:  258 PRDHDKPSHLWFGGYDLSIVSENATWHYTPVIRRSYGDFKYWTVKMYGLQVLSNGGLDVKA-------------------------DMCSSGCYAIVDTGTSGIAIPELYYYEVVNYITE--GLHCRGITCYNVQVSDFPDLTFYLAPDNELPLRAADYVTCSRWGECVFKIQPSYGGAYWILGDVFMEAYYTLFDVENMRVGFACDGT-CTGGDWHGKGGFLELEEAQEW 460          
BLAST of mRNA_Ecto-sp13_S_contig12900.2390.1 vs. uniprot
Match: A0A835ZFV3_9STRA (Aspartic peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFV3_9STRA)

HSP 1 Score: 258 bits (658), Expect = 2.900e-80
Identity = 122/232 (52.59%), Postives = 151/232 (65.09%), Query Frame = 1
Query:    1 PCAREKPSHMLFGSYDLSIVSEGAAWHYTPVIRHSRGELRYWTVKMTAMTMVTSSPLVVTAEEEATAGEQPADGYEIPPLGGSEDIDLCSSGCYAIVDTGTSGIAIPEDYFYTLAEQITEASGASCKGTTCYNTKGSDFPDLMFELYPSNKFILRGEDYTVCSRWGVCVVKLQPSFGGDFWILGDVFIEAYYTLFDVENLRVGFACTGNGCSGGTWHGQGGFMEIEDQASWR 696
            P    +PSH+ FG +DL IVS  A WHYTPV+R + GELRYWTVK+T + +V             T G+            G   +  C  GC AIVDTGTSGIA+PE  +  L  Q+T+  G +C+GT C   K SDFPDL+F +YP N F LR EDY VC+ WG C+VKLQPSFGG +WILGD F++AYY +FDV+NLRVGFAC G  C GGTWHG+GG +E+E+   WR
Sbjct:  204 PHDASRPSHLAFGGFDLDIVSANATWHYTPVVRQAYGELRYWTVKVTGVGVV------------GTRGKDR----------GRRVMSQCPGGCLAIVDTGTSGIAVPEVIYGDLVAQVTK--GLNCRGTQCIGAKASDFPDLVFSIYPDNVFPLRNEDYVVCTGWGQCLVKLQPSFGGSYWILGDTFLQAYYAVFDVDNLRVGFACEGT-CQGGTWHGKGGLLELEEAEQWR 410          
BLAST of mRNA_Ecto-sp13_S_contig12900.2390.1 vs. uniprot
Match: A0A7S2CG53_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG53_9STRA)

HSP 1 Score: 249 bits (637), Expect = 6.790e-80
Identity = 121/233 (51.93%), Postives = 147/233 (63.09%), Query Frame = 1
Query:    1 PCAREKPSHMLFGSYDLSIVSEGAAWHYTPVIRHSRGELRYWTVKMTAMTMVTSSPLVVTAEEEATAGEQPADGYEIPPLGGSEDIDLCSSGCYAIVDTGTSGIAIPEDYFYTLAEQITEASGASCKGTTCYNTKGSDFPDLMFELYPSNKFILRGEDYTVCSRWGVCVVKLQPSFGGDFWILGDVFIEAYYTLFDVENLRVGFACTGNGCSGGTWHGQGGFMEIEDQASWRR 699
            P   + PSH++FGSYDL IV   A WHYTPVI+   G+ +YWTVKM++MT+            E+   +Q                DLC S CYAIVD+GTSGIA+PED +  L   +T+  G  CKG TCY    SDFPDL+F L P N+F L  EDY  CS WG CV+K Q S G  +WILGDVFIEAYYTLFDVEN+R+GFAC G  C GG WHGQGGF+E++    W +
Sbjct:   36 PDDEKHPSHLVFGSYDLEIVGPNATWHYTPVIKRGYGDFKYWTVKMSSMTV------------ESRRNDQ---------------WDLCKSTCYAIVDSGTSGIAVPEDSYDDLISYVTD--GLHCKGITCYYASESDFPDLVFFLSPDNEFPLLAEDYVSCSHWGECVIKFQVSSGSSYWILGDVFIEAYYTLFDVENMRIGFACDGE-CGGGNWHGQGGFIEVDGPPYWEQ 238          
BLAST of mRNA_Ecto-sp13_S_contig12900.2390.1 vs. uniprot
Match: F0Y569_AURAN (Peptidase A1 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y569_AURAN)

HSP 1 Score: 251 bits (641), Expect = 7.860e-78
Identity = 113/231 (48.92%), Postives = 153/231 (66.23%), Query Frame = 1
Query:    1 PCAREKPSHMLFGSYDLSIVSEGAAWHYTPVIRHSRGELRYWTVKMTAMTMVTSSPLVVTAEEEATAGEQPADGYEIPPLGGSEDIDLCSSGCYAIVDTGTSGIAIPEDYFYTLAEQITEASGASCKGTTCYNTKGSDFPDLMFELYPSNKFILRGEDYTVCSRWGVCVVKLQPSFGGDFWILGDVFIEAYYTLFDVENLRVGFACTGNGCSGGTWHGQGGFMEIEDQASW 693
            P   ++PSH+ FG YDL IV + A WHYTPVI+   G+ +YWTVKMT M +V++                            + ++DLC SGCYAIVD+GTSGIA+PE+ +  L   +T+  G +C+  TCY  K +DFP L F+L P N+F +   DY  CSRWG CV+K Q S G  +WILGDVF+EAYYTL+DV+NLRVGFAC G+ C+GGTWHG+GG++E+++ ++W
Sbjct:  235 PDDADRPSHLTFGDYDLGIVGDNATWHYTPVIKRGFGDFKYWTVKMTGMAVVSTDD--------------------------ASELDLCPSGCYAIVDSGTSGIAVPEESYDALVAAVTK--GLNCRDITCYYAKSADFPALTFKLSPDNEFPMHAADYVSCSRWGECVIKFQKSSGSSYWILGDVFMEAYYTLYDVDNLRVGFACAGD-CNGGTWHGKGGYVEVDEVSTW 436          
BLAST of mRNA_Ecto-sp13_S_contig12900.2390.1 vs. uniprot
Match: A0A7S3JN10_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JN10_9STRA)

HSP 1 Score: 243 bits (620), Expect = 1.980e-74
Identity = 111/226 (49.12%), Postives = 147/226 (65.04%), Query Frame = 1
Query:   16 KPSHMLFGSYDLSIVSEGAAWHYTPVIRHSRGELRYWTVKMTAMTMVTSSPLVVTAEEEATAGEQPADGYEIPPLGGSEDIDLCSSGCYAIVDTGTSGIAIPEDYFYTLAEQITEASGASCKGTTCYNTKGSDFPDLMFELYPSNKFILRGEDYTVCSRWGVCVVKLQPSFGGDFWILGDVFIEAYYTLFDVENLRVGFACTGNGCSGGTWHGQGGFMEIEDQASW 693
            K SH++FG+YDL IV   A WHYTPV++   G+ +YWTVKM  ++ +  +                             D DLCS  CYAIVD+GTSGIA+PED +  L + +T     +CK  TCY  K SDFPDL+F+L P N+F L+  DY  CS+WG CV+K Q S G  +WILGDVFIEAYYTL+DV+NLRVGFAC G  C+GG+WHG+GG+++++D ++W
Sbjct:  194 KTSHLVFGTYDLDIVGPNATWHYTPVVKRGLGDFKYWTVKMFGLSRLNQN-----------------------------DDDLCSDSCYAIVDSGTSGIAVPEDVYDDLVKLVTREL-TNCKDITCYYAKQSDFPDLVFKLAPDNEFPLKATDYVACSKWGECVIKFQKSSGSTYWILGDVFIEAYYTLYDVDNLRVGFACQGQ-CNGGSWHGRGGYVDVDDVSTW 388          
BLAST of mRNA_Ecto-sp13_S_contig12900.2390.1 vs. uniprot
Match: A0A7S2SMR0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMR0_9STRA)

HSP 1 Score: 229 bits (584), Expect = 2.840e-69
Identity = 112/234 (47.86%), Postives = 141/234 (60.26%), Query Frame = 1
Query:    1 PCAREKPSHMLFGSYDLSIVSEGAAWHYTPVIRHSRGELRYWTVKMTAMTMVTSSPLVVTAEEEATAGEQPADGYEIPPLGGSEDIDLC-SSGCYAIVDTGTSGIAIPEDYFYTLAEQITEASGASCKGTTCYNTKGSDFPDLMFELYPSNKFILRGEDYTVCSRWGVCVVKLQPSFGGDFWILGDVFIEAYYTLFDVENLRVGFACTGNGCSGGTWHGQGGFMEIEDQASWRR 699
            P   + PSH+L G YDLSIV   A WHYTPV++ S G+ +YWTVK+T++                 AG                  +LC SS C+AIVD+GTSGIAIP   + T+   +T+  G  C   TCY    SDFPDL F L P N+F +   DY  CS+WG CVVK Q + G  +WILGD FIEAYYTLFD EN+RVGFAC+G  CSGG+WHG+GGF+E++    W +
Sbjct:  136 PQDAKHPSHLLIGGYDLSIVGSNATWHYTPVVKRSYGDFKYWTVKITSV----------------KAGST----------------ELCDSSMCFAIVDSGTSGIAIPSSQYATVLATVTK--GLQCSDITCYYASASDFPDLYFSLAPDNEFPILASDYVTCSKWGECVVKFQQATGASYWILGDTFIEAYYTLFDAENMRVGFACSGQ-CSGGSWHGKGGFIEVDSPPLWEQ 334          
BLAST of mRNA_Ecto-sp13_S_contig12900.2390.1 vs. uniprot
Match: A0A7S4A4W9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4W9_9STRA)

HSP 1 Score: 211 bits (536), Expect = 1.150e-61
Identity = 106/231 (45.89%), Postives = 139/231 (60.17%), Query Frame = 1
Query:   13 EKPSHMLFGSYDLSIVSEGAAWHYTPVIRHSRGELRYWTVKMTAMTMVTSSPLVVTAEEEATAGEQPADGYEIPPLGGSEDIDL----CSSGCYAIVDTGTSGIAIPEDYFYTLAEQITEASGASCKGTTCYNTKGSDFPDLMFELYPSNKFILRGEDYTVCSRWGVCVVKLQPSFGGDFWILGDVFIEAYYTLFDVENLRVGFACTGNGCSGGTWHGQGGFMEIEDQASW 693
            +K SH+ FGSYDLS+V + A+WHYTP++R  RG+                        E+ T        Y +  L G E +++    C+ GCY+IVD+GTSG+ +P+D +      +T   G +CK  TCY     DFPDL F L P N F LR  DY  CSRWG CVVK+Q + G  +WILGDVF EAYYTL+DVENLRVGFAC G  C GG WHG+GG+++++D + W
Sbjct:  283 DKKSHLAFGSYDLSLVGKNASWHYTPLVR--RGD------------------------EDTTLR------YWLTKLKGVE-LEVGDAWCAKGCYSIVDSGTSGLGLPDDVYDDFVAAVTR--GLNCKDVTCYYASEDDFPDLSFSLEPDNVFPLRARDYVSCSRWGECVVKVQKASGSPYWILGDVFTEAYYTLYDVENLRVGFACEGE-CEGGGWHGKGGYVDVDDPSVW 477          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12900.2390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZZ3_ECTSI6.130e-15590.56Pepsinogen n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5LLK6_9PHAE2.710e-15491.38Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
A0A7S2UUR2_9STRA2.040e-8854.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4DAX8_HETAK3.150e-8757.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZFV3_9STRA2.900e-8052.59Aspartic peptidase domain-containing protein n=1 T... [more]
A0A7S2CG53_9STRA6.790e-8051.93Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0Y569_AURAN7.860e-7848.92Peptidase A1 domain-containing protein n=1 Tax=Aur... [more]
A0A7S3JN10_9STRA1.980e-7449.12Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2SMR0_9STRA2.840e-6947.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4A4W9_9STRA1.150e-6145.89Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12900contigEcto-sp13_S_contig12900:1503..4848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score443.0
Seed ortholog evalue8.5e-122
Seed eggNOG ortholog2880.D7FZZ3
Model size700
KEGG koko:K01379,ko:K01382
KEGG Pathwayko04071,ko04140,ko04142,ko04210,ko04915,ko05152,map04071,map04140,map04142,map04210,map04915,map05152
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG1339@1,KOG1339@2759
EC3.4.23.34,3.4.23.5
Cds size672
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12900.2390.1prot_Ecto-sp13_S_contig12900.2390.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12900 1503..4821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462690.4734643-CDS-Ecto-sp13_S_contig12900:1502..16341681462690.4734643-CDS-Ecto-sp13_S_contig12900:1502..1634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12900 1503..1634 -
1681462690.4925733-CDS-Ecto-sp13_S_contig12900:1888..20291681462690.4925733-CDS-Ecto-sp13_S_contig12900:1888..2029Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12900 1889..2029 -
1681462690.5112891-CDS-Ecto-sp13_S_contig12900:2677..27961681462690.5112891-CDS-Ecto-sp13_S_contig12900:2677..2796Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12900 2678..2796 -
1681462690.528907-CDS-Ecto-sp13_S_contig12900:3835..40231681462690.528907-CDS-Ecto-sp13_S_contig12900:3835..4023Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12900 3836..4023 -
1681462690.5407863-CDS-Ecto-sp13_S_contig12900:4729..48211681462690.5407863-CDS-Ecto-sp13_S_contig12900:4729..4821Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12900 4730..4821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462690.5520973-UTR-Ecto-sp13_S_contig12900:4821..48481681462690.5520973-UTR-Ecto-sp13_S_contig12900:4821..4848Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12900 4822..4848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12900.2390.1

>prot_Ecto-sp13_S_contig12900.2390.1 ID=prot_Ecto-sp13_S_contig12900.2390.1|Name=mRNA_Ecto-sp13_S_contig12900.2390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp
MLFGSYDLSIVSEGAAWHYTPVIRHSRGELRYWTVKMTAMTMVTSSPLVV
TAEEEATAGEQPADGYEIPPLGGSEDIDLCSSGCYAIVDTGTSGIAIPED
YFYTLAEQITEASGASCKGTTCYNTKGSDFPDLMFELYPSNKFILRGEDY
TVCSRWGVCVVKLQPSFGGDFWILGDVFIEAYYTLFDVENLRVGFACTGN
GCSGGTWHGQGGFMEIEDQASWRR
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mRNA from alignment at Ecto-sp13_S_contig12900:1503..4848-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12900.2390.1 ID=mRNA_Ecto-sp13_S_contig12900.2390.1|Name=mRNA_Ecto-sp13_S_contig12900.2390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3346bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12900:1503..4848- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTGTGCCAGGGAAAAGCCAAGCCACATGCTGTTCGGCAGCTATGACCT GAGCATCGTTTCGGAGGGCGCCGCTTGGCACTACACTCCCGTCATCCGAC ATTCTCGAGGCGAACTCAGGTATGCACATGGCCTATGACCCCCTTCCTCC CACACACACGCCTCCGTTCCCTGAGAAGCAAAGGCTGACTACATGTGCCG TTTTGATAGCTCGAGATCGAAGCACGTGGTTACTGTTTTCCCAAGACCCC CCTGTGTTTCGAGATGCATGAGGGCGGCACGAAGATATCGCTTTTCTTGC CCCGCAATGAGAGCCGCCACCTGTGGGTGTTTTTATGTATGAGGTTTGCT CCTTTTTTTTCATGAGGTTTTCTCGACCTCTTTCTCCTCGTGTCCGTCCC CGTGTAACATCACGGTCGATCACTCACGTCAAACCCCACCGCCTCTCTTG AGAAAATATGCATACAATCGAAGAGAGACTAATACCCGTTTGAGGTAATA CCACGCTCGTAGTAGGTTGTGTTGACGTCTTTACAGTGAGTGGGAACAAA ACCAGCGCCTCGTTTTTTGCGACTGGCTCACCTCAATATCCCACCGCGTT TAAGCTTGCCACTACCTATGTTAGTACCCTTTTCAGGGTAAGTTAGCCTG TGACCACGGGAATCGGCCGCGTCAAATGTTAGATTAGTACGGACAGATGA AGGCGCTGGGCAGAGAAATCGGAACGGCTTTTAATGTGAAGACAAGAACA ACCTCCCTCGGCTCATACCCTACCGCCTTTTCTTGCGGGATCCGCGACGC TACATAACGCGCGCGTGCTGCGCAGATATTGGACGGTGAAAATGACTGCC ATGACTATGGTGACCAGCTCACCCCTCGTGGTCACGGCGGAAGAAGAGGC GACGGCTGGCGAGCAGCCCGCGGACGGTTACGAAATTCCTCCCTTGGGTG GTTCCGAAGACATAGACCTGTGCTCCTCCGGTTGCTACGCCATCGTCGAT ACAGGCACCTCGGGTGAGAGGAACGCCTTCAGCGGTTGCGAAACCCTCCG CTTTTTTTTCATTAACCACACGGCTTTGCAACCATTTTCATCTCTGCCCA CAGATAATTATCAAGCAACACAACTAGTGTCATCTCTTCAACTGAGTTCC TGTTCCTAGAGGTCAAGTTATCAAATTTCGGTCGTATTCGAGCATGAAGT TCTCGACTCCTAGGTTCTCGAGTGGCGTCTTTCTGTGTTTCCTGGTATGT ATAGAGTCCTCCCGTGGACGAAGACATCGCGTGCTGCTTGCTGTCTACAC GCCACCATCGCAGCGTATTTGCTATGTTTGTTTCCATTGCGATACCCCCT TCCCCACCTTTCGTTGCCGGTACCATCCCTCTTCGCCTGGCCGCATGGCG TCCGCTTTTTCGCCATTGGTCGATACCTCGTGCTGCTGTCTACAGGGTTT AGGGTGACATTCATTACGCCCCCCTTACCTTTTCGCTTGCGGTTTGGGGG TTGGTTCCGCCTGCGTGCCACCGCCTTCGCGGAATATGAAGTATTGTAAG GAAATGGAACAGGGAGGGGGGACGCAGGCAGTATTCGCTAACCCTAAGCC CACGCAACTTCCCCGATTGCATTCTTCATCCAACATGTTTGCTGAATACA ACGACCCTGCGAAGGGTATCGCCCCCCTGTGTGCTGGTATCATCCCTTTC TTATTTTTGCCTCGCATGATACTTTCCCTTCCTCGACGCAGCTTGTTTGT CGCCCAGATCAAGATACCGCCGACTCATTTTTTTACACAGCCCTCGGTTT CTCCACCACCTCCCCTCCAGCGTTCTCCCCAGCTTTTGACACAATCTCCG ACCCGACATGCGGTGAAGCAGTGGACGTTTGATCCCCTAAAGTGGGGGCA AGCGCAAGTCGGCACGAGCCCCACTCTGATGCGTGATCCAAAACGACGTT GACTTTAATCCCCTGGCATTGAACCCCCTGGCATATTTCCCTCTTCTGCT CTCCTCGAAACTACTGTACGCGACACTGACCCTTACGCGGACACTGACAC AGGGATTGCCATACCCGAGGACTACTTCTACACGCTCGCGGAACAGATCA CGGAGGCCAGCGGCGCATCGTGCAAGGGGACTACCTGCTACAATACCAAG GGCTCCGACTTCCCCGATCTGGTAGGTACCGCCCCCTGCGTGTGGTTGCT TGATGGCGTGCACACAGTTTCTTCCGAAGAATGGATGGCGGTCGCATGAG TGTTGGTAGTTCTCGCCAACGACCTGTGGATATCGTGGTGGCGTGCGGGA TATTTCGGAGTACGGAGAGTGATGCCATCGAGATGTCTGTCTCAATCGTC AGGCGGCCGCCTGTTTGTGGATTGCCCGCTCCATGGGAAAAACCGAAGCG GCAGATGTCTGCTTTCTCGTTGCCGTCGGCGTGTTGCTTGGGCATGACGT GCAGCTGTTGAGTCCGATGTGTTTGACGATTTCGTCTTTCCTGGACAGAA TGGTTCCCCCTCCGTGCAATGCCAAGTGTTGCTTTGTATGTGGTGGGAGT TTCGAGTCGAGATTCACACCCTCCCCAGCAGCTTCATTCAAACATCCCTT GTGAAATTGAATTTTGTGATCGCTCGCTCAACGAATGTTCCTGCTGGCAA TGTAGGAACTTTGAACGTGTTCTACGACTCTTGGCAATTACGCCGCCGTC CCTCTGGGATATAACCGCCTAATCGCGCCGCGTGTCCTCTGGAACGCGCC GCGTGTCCTCTGGAACGTAACCGCCGAATTGCGCCGCCCGCCCTATTACC GTTGCTGCCTTCTCGTCAGATGTTCGAGCTGTACCCGTCCAACAAGTTCA TTTTGCGGGGAGAGGACTATACCGTGTGCAGCCGCTGGGGCGTTTGCGTG GTGAAGCTGCAGCCGAGCTTCGGCGGCGATTTTTGGATCCTCGGGGATGT TTTCATCGAGGTAATACCCAGAAAAGTTATCGTTTCGTTTATGGGATTGA GGATCACGGTCCTTATCGCTATGAAGTGTTGTGAGTTTCGTTTGCACGTT GAGTTGGAAGCCGAAAGCATCCGTTGGTTGGACGACCATGTGCTCGGACG GGTGTCATGAAAAGTCTTGCGCCGTGTTTTTCGCATACCATATGATGAAG TGTCTGCTCGCACTGTGCCTCGTCAAGCCCCTAAAGCGTCACGACGGCGC TCCTACCTTCGTAGGCTTACTATACCCTCTTCGACGTGGAGAACCTGAGG GTGGGATTCGCCTGCACGGGGAACGGGTGCTCTGGCGGCACGTGGCACGG GCAGGGTGGCTTCATGGAGATTGAGGACCAAGCGTCTTGGCGAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12900:1503..4848-

>mRNA_Ecto-sp13_S_contig12900.2390.1 ID=mRNA_Ecto-sp13_S_contig12900.2390.1|Name=mRNA_Ecto-sp13_S_contig12900.2390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12900:1503..4848- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGTTCGGCAGCTATGACCTGAGCATCGTTTCGGAGGGCGCCGCTTG
GCACTACACTCCCGTCATCCGACATTCTCGAGGCGAACTCAGATATTGGA
CGGTGAAAATGACTGCCATGACTATGGTGACCAGCTCACCCCTCGTGGTC
ACGGCGGAAGAAGAGGCGACGGCTGGCGAGCAGCCCGCGGACGGTTACGA
AATTCCTCCCTTGGGTGGTTCCGAAGACATAGACCTGTGCTCCTCCGGTT
GCTACGCCATCGTCGATACAGGCACCTCGGGGATTGCCATACCCGAGGAC
TACTTCTACACGCTCGCGGAACAGATCACGGAGGCCAGCGGCGCATCGTG
CAAGGGGACTACCTGCTACAATACCAAGGGCTCCGACTTCCCCGATCTGA
TGTTCGAGCTGTACCCGTCCAACAAGTTCATTTTGCGGGGAGAGGACTAT
ACCGTGTGCAGCCGCTGGGGCGTTTGCGTGGTGAAGCTGCAGCCGAGCTT
CGGCGGCGATTTTTGGATCCTCGGGGATGTTTTCATCGAGGCTTACTATA
CCCTCTTCGACGTGGAGAACCTGAGGGTGGGATTCGCCTGCACGGGGAAC
GGGTGCTCTGGCGGCACGTGGCACGGGCAGGGTGGCTTCATGGAGATTGA
GGACCAAGCGTCTTGGCGAAGG
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