mRNA_Ecto-sp13_S_contig129.2383.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig129.2383.1
Unique NamemRNA_Ecto-sp13_S_contig129.2383.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: D7FNH1_ECTSI (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH1_ECTSI)

HSP 1 Score: 460 bits (1184), Expect = 6.480e-163
Identity = 245/248 (98.79%), Postives = 246/248 (99.19%), Query Frame = 1
Query:    1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 744
            MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIF DSEKEAKEFDVAKHFDTVPELADRAFNRPRK+ LEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR
Sbjct:    1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFFDSEKEAKEFDVAKHFDTVPELADRAFNRPRKDTLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 248          
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: A0A836CK24_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK24_9STRA)

HSP 1 Score: 272 bits (696), Expect = 1.130e-88
Identity = 140/248 (56.45%), Postives = 187/248 (75.40%), Query Frame = 1
Query:    1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 744
            MSSLRNAVKR  HKERAQPASR K GLLEKH DYVLRAR+Y  KRDR+ AL+LKA+++NPDEFYF MH+ KT+ GVH ++G+ +L H+   +LKTQD+ Y+   R+ D +KA +L+  LHML+A P+N HT+F+ ++++ + FD A++FDT PELA R FNRPR   LE  QV GA +R  LKK LK+RDA+Y E+  R ERA KM +A  HL AQR +M ++GT  KV+ A+ G+P VY+WK++R++
Sbjct:    1 MSSLRNAVKRKTHKERAQPASRSKFGLLEKHSDYVLRARDYNAKRDRLNALRLKASLRNPDEFYFGMHKAKTKEGVHQVEGSSSLDHETAHMLKTQDMAYIHMKRAVDIKKAERLKAGLHMLDAPPQNTHTVFVKNKRQRRAFDAAEYFDTAPELAGRTFNRPRMATLESKQVLGAESRADLKKALKQRDAAYQEVEAREERARKMTRAAAHLAAQRALMTARGTVTKVKGAEKGQPPVYKWKRQRAK 248          
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: A0A8K1CCZ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCZ2_PYTOL)

HSP 1 Score: 245 bits (626), Expect = 4.600e-78
Identity = 136/248 (54.84%), Postives = 177/248 (71.37%), Query Frame = 1
Query:    7 SLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDG--AETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 744
            SLRN VKR EHKER Q   R+KLGLLEKHKDYVLRAR+Y KK+DR++ +KLKAA +NPDEFYF M+  +TE GVHV +   +E L  + +++LKTQDL Y+   R+ D RKA KL + LH ++A   NKHT+F+DS ++   FDVA HFDT PELADRAFNR RK  L+   +   T+++QL+ + K+RDA Y EL  RL RA K+++    L+ +RKV  +KG KRKVQ+    RP VY+WKKER +
Sbjct:    2 SLRNVVKRREHKERGQLQERKKLGLLEKHKDYVLRARDYNKKQDRLRTMKLKAAFRNPDEFYFKMNTTRTEDGVHVSENNHSEKLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLTQGLHFIDAPKNNKHTVFVDSSEDLNTFDVATHFDTAPELADRAFNRLRKETLKTTTIQATTDKKQLRALTKERDAVYRELNDRLIRATKIQQMSDRLDLERKVQ-AKGKKRKVQDGDSSRPPVYKWKKERQK 248          
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: K3WAT9_GLOUD (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAT9_GLOUD)

HSP 1 Score: 240 bits (612), Expect = 6.460e-76
Identity = 136/251 (54.18%), Postives = 181/251 (72.11%), Query Frame = 1
Query:    1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVL--DGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEA-GPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 744
            MSSLRN VKR EHKER Q   R+KLGLLEKHKDYV RAR+Y KK+D ++AL +KAA +NPDEFYF M+  +TE GVHV   +  + L  + +++LKTQDL Y+   R+ D RKA KL E LH ++A G  NKH +F+DS+ E + FDVAKHFDTVPE+ADRAFNR RK+ L+   +    +++ LKK+  +RDA Y EL  RL+RA  + +    L+ +RKV  +KG K K+++A+DG+PAVYRWKK+R +
Sbjct:    1 MSSLRNVVKRREHKERGQLRERKKLGLLEKHKDYVKRARDYNKKQDHLKALAVKAAFRNPDEFYFRMNSTRTEDGVHVSTHNHHKQLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLNEGLHFIDAAGKDNKHVVFVDSKDEVESFDVAKHFDTVPEIADRAFNRLRKDTLKTVSLPAVQDKKTLKKLGIERDAVYRELNDRLQRASTIDRMRAKLDLERKVQ-AKGKKMKIKDAEDGQPAVYRWKKQRQK 250          
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: A0A5D6XJY8_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJY8_9STRA)

HSP 1 Score: 238 bits (608), Expect = 2.600e-75
Identity = 130/248 (52.42%), Postives = 175/248 (70.56%), Query Frame = 1
Query:    7 SLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDG----AETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKER 738
            SLRN VKR EHKER QP  R+KLGLLEKHKDYV RAR+Y  K+DR++ ++LKAA +NPDEFYF M+  +TEGGVHV D      + L  D +++LKTQD+ Y+   R+ D RKA KL   LH ++A   NKH +F+DSE +  +FDVA HFDT PELADRAFNR R + L+   +   ++ +++KK  ++RD  Y EL  RLERA  + +    L+ +RKV  +KG K K+++A++G+PAVYRWKK+R
Sbjct:    2 SLRNVVKRREHKERGQPQERKKLGLLEKHKDYVKRARDYNSKQDRLRTMQLKAAFRNPDEFYFRMNATRTEGGVHVSDNNRLDGKALTADALKVLKTQDVAYLHLKRAVDMRKAEKLNAGLHFIDAPTANKHVVFVDSEAQLAKFDVAAHFDTAPELADRAFNRVRMDALKTLALPAVSSAKEIKKRNRERDGVYRELSDRLERAATLDRMRAKLDLERKVQ-AKGKKMKIKDAENGQPAVYRWKKQR 248          
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: A0A0P1B0R4_PLAHL (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0R4_PLAHL)

HSP 1 Score: 229 bits (585), Expect = 7.860e-72
Identity = 132/251 (52.59%), Postives = 179/251 (71.31%), Query Frame = 1
Query:    1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVL--DGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEKAQVTG-ATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 744
            MSSLRN VKR EHKER Q   RRKLGLLEKHKDYV RA++Y  K+ R++ L+LKAA++NPDEFY  MH  KTEGGVH+   +  ++L  + ++ LKTQDL Y+   R+ D RKA +L   LH ++A   NKHT+F+D +++ + FDVA++FDTVPELADRAFNR R+  LE  ++   A + +Q  K+  +RDA Y EL  RL RA+K+ +    L+ +RKV  +KG KRKV+ A++G PAVYRWK++R +
Sbjct:    1 MSSLRNVVKRREHKERGQLRDRRKLGLLEKHKDYVKRAQDYNSKQKRLKMLQLKAALRNPDEFYHRMHNNKTEGGVHISTHNHLKSLSTEALRTLKTQDLAYLHLKRAVDLRKAERLNRGLHFVDAPKDNKHTVFVDDKEQVENFDVAQYFDTVPELADRAFNRIRRRDLEMVELPDMAASPKQKYKMQVERDALYRELRDRLTRAKKIGQMSAKLDLERKVQ-AKGRKRKVKAAENGMPAVYRWKQQRQK 250          
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: D0NVW8_PHYIT (U3 small nucleolar RNA-associated protein 11 n=14 Tax=Phytophthora TaxID=4783 RepID=D0NVW8_PHYIT)

HSP 1 Score: 228 bits (581), Expect = 3.160e-71
Identity = 132/251 (52.59%), Postives = 174/251 (69.32%), Query Frame = 1
Query:    1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVL--DGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEKAQVTG-ATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 744
            MSSLRN VKR EHKER Q   RRKLGLLEKHKDYV RAR+Y  K+ R++ L+LKAA++NPDEFY  M   KTEGGVHV   +  +++  + ++ LKTQDL Y+   R+ D RKA +L   LH ++A   N HT+F+D E++   FDVA+HFDT PEL DRAFNR RK  LE A++   A N +Q  K+  ++DA Y EL  RL RA K+ +    L+ +RKV  +KG K+KV+ A++G PAVYRWK++R +
Sbjct:    1 MSSLRNVVKRREHKERGQLRERRKLGLLEKHKDYVKRARDYNSKQKRLKTLQLKAALRNPDEFYHRMRGTKTEGGVHVSTHNHIKSVETEALRTLKTQDLAYLHMKRAVDLRKAERLNRGLHFVDAPKNNNHTVFVDDEEQVDSFDVAEHFDTAPELVDRAFNRIRKRDLETAELPDLAANPKQKYKMQVEKDAMYRELRDRLARANKLGQMSAKLDLERKVQ-AKGRKKKVKAAENGMPAVYRWKQQRQK 250          
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: A0A7S2W8G3_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8G3_9STRA)

HSP 1 Score: 228 bits (580), Expect = 5.780e-71
Identity = 128/259 (49.42%), Postives = 180/259 (69.50%), Query Frame = 1
Query:    1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVL---DGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLE--------KAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 744
            M+SLRNA+ R  H+ER+Q ASR  LGLLEK KDYV RAR++ +K  +++ L+ KA  +NPDEFYF M  +KT+ GVHV    DGA+ L HD + L+K+QDLGY+S  ++ D+RK+ +L+  LHML   P N+HT+FLD  K+ + FD A+HFDT+PELA RAFNRPR+   E           V  +T+ +Q KK++K +D +Y +L +RLER+EK++K     E ++KVM  KG KRKV+ +  G P VY+WK++R+R
Sbjct:    1 MASLRNALPRRTHRERSQVASRAHLGLLEKKKDYVERARDFQRKTGKIKNLRKKARERNPDEFYFGMVNQKTKDGVHVAERNDGADKLSHDDILLMKSQDLGYLSMKKAVDDRKSERLQSGLHMLLDKPLNQHTVFLDKSKDVETFDAAEHFDTMPELAGRAFNRPRRKAFEADKEGSIASTPVMTSTSSKQYKKIMKSKDKAYEDLAERLERSEKLRKLIQRKEVEKKVMG-KGRKRKVEGSSSGAPPVYKWKRKRAR 258          
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: A0A3R7K0P1_9STRA (U3 small nucleolar RNA-associated protein 11 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K0P1_9STRA)

HSP 1 Score: 228 bits (580), Expect = 8.700e-71
Identity = 132/251 (52.59%), Postives = 176/251 (70.12%), Query Frame = 1
Query:    1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVL--DGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEKAQVTG-ATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 744
            MSSLRN VKR EHKER Q   RRKLGLLEKHKDYV RA++Y +K+  ++ L+LKA+M+NPDEFY+ M   KTEGGVH+   + A+ L  + ++ LKTQDL Y+   R+ D RKA KL   LH ++    NKHT+F+D + +  +FDVA+HFDT PELADRAFNR RK  LE  ++   A + +Q  K+  ++DA Y EL  RLERA+K+ +    L+ +RKV  +KG K KV+ A+DG PAVYRWK++R +
Sbjct:   22 MSSLRNVVKRREHKERGQLRERRKLGLLEKHKDYVKRAKDYNQKQKHLRNLQLKASMRNPDEFYYKMIHGKTEGGVHISTHNHAKQLNAEALRTLKTQDLAYLHMKRAVDLRKAEKLNRGLHFIDTPKNNKHTVFVDEDDDVNKFDVAEHFDTAPELADRAFNRLRKADLETMELPDLAADPKQKYKMQVEKDAMYRELRDRLERAKKIGRMSAKLDLERKVQ-AKGKKMKVKGAEDGMPAVYRWKQQRQK 271          
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: A0A4D9DA46_9STRA (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA46_9STRA)

HSP 1 Score: 226 bits (576), Expect = 1.860e-70
Identity = 130/247 (52.63%), Postives = 175/247 (70.85%), Query Frame = 1
Query:    4 SSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAE-TLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEK-AQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKER 738
            +SLRNA+ R  +KER+QPA+R+K GLLEKHKDYV RA +Y +K   + +L+ KAA +NPDEFYFAM + +T+ GVH +  AE +LPHD + LLKTQD+ YV+  R+ D +KA KL+  LH L     NKHT+F+D+E E + FD AKHF T P L  RAFNRP+   LE    V G  N  +LKKV K R+ +Y+EL +RL+R+   K+   H++ ++ VM  KG KRKVQEA+DG+PAV++WK+ER
Sbjct:    4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKSKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVTMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTEAEVETFDPAKHFGTDPALVTRAFNRPKLETLETPGAVLGVANVGELKKVRKAREKAYTELGERLKRSLSFKEVLEHMQVEKNVMG-KGRKRKVQEAEDGKPAVFKWKRER 249          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNH1_ECTSI6.480e-16398.79U3 small nucleolar RNA-associated protein 11 n=2 T... [more]
A0A836CK24_9STRA1.130e-8856.45U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A8K1CCZ2_PYTOL4.600e-7854.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WAT9_GLOUD6.460e-7654.18U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A5D6XJY8_9STRA2.600e-7552.42U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A0P1B0R4_PLAHL7.860e-7252.59U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
D0NVW8_PHYIT3.160e-7152.59U3 small nucleolar RNA-associated protein 11 n=14 ... [more]
A0A7S2W8G3_9STRA5.780e-7149.42U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A3R7K0P1_9STRA8.700e-7152.59U3 small nucleolar RNA-associated protein 11 n=4 T... [more]
A0A4D9DA46_9STRA1.860e-7052.63U3 small nucleolar RNA-associated protein 11 n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig129contigEcto-sp13_S_contig129:10226..14021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score463.0
Seed ortholog evalue8.8e-128
Seed eggNOG ortholog2880.D7FNH1
Preferred nameUTP11L
Model size808
KEGG koko:K14685,ko:K14769
KEGG TC2.A.100.1
KEGG Pathwayko04216,ko04978,map04216,map04978
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010941,GO:0010942,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons6
EggNOG free text desc.rRNA processing
EggNOG OGsCOG5223@1,KOG3237@2759
Ec32 ortholog descriptionSmall-subunit processome, Utp11
Ec32 orthologEc-01_005480.1
Cds size747
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig129.2383.1prot_Ecto-sp13_S_contig129.2383.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig129 10226..13960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462689.947696-CDS-Ecto-sp13_S_contig129:10225..103281681462689.947696-CDS-Ecto-sp13_S_contig129:10225..10328Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 10226..10328 +
1681462689.9601824-CDS-Ecto-sp13_S_contig129:11153..113231681462689.9601824-CDS-Ecto-sp13_S_contig129:11153..11323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 11154..11323 +
1681462689.968398-CDS-Ecto-sp13_S_contig129:11716..118681681462689.968398-CDS-Ecto-sp13_S_contig129:11716..11868Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 11717..11868 +
1681462689.9772031-CDS-Ecto-sp13_S_contig129:12309..124001681462689.9772031-CDS-Ecto-sp13_S_contig129:12309..12400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 12310..12400 +
1681462689.9866595-CDS-Ecto-sp13_S_contig129:13009..130991681462689.9866595-CDS-Ecto-sp13_S_contig129:13009..13099Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 13010..13099 +
1681462689.9957852-CDS-Ecto-sp13_S_contig129:13819..139601681462689.9957852-CDS-Ecto-sp13_S_contig129:13819..13960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 13820..13960 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462690.0049906-UTR-Ecto-sp13_S_contig129:13960..140211681462690.0049906-UTR-Ecto-sp13_S_contig129:13960..14021Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig129 13961..14021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig129.2383.1

>prot_Ecto-sp13_S_contig129.2383.1 ID=prot_Ecto-sp13_S_contig129.2383.1|Name=mRNA_Ecto-sp13_S_contig129.2383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp
MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQA
LKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAETLPHDVVQLLKTQDLGY
VSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFD
TVPELADRAFNRPRKNMLEKAQVTGATNRRQLKKVLKKRDASYSELMQRL
ERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR*
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mRNA from alignment at Ecto-sp13_S_contig129:10226..14021+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig129.2383.1 ID=mRNA_Ecto-sp13_S_contig129.2383.1|Name=mRNA_Ecto-sp13_S_contig129.2383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3796bp|location=Sequence derived from alignment at Ecto-sp13_S_contig129:10226..14021+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTCCCTTCGCAATGCTGTCAAGCGCGTGGAGCACAAAGAACGGGC TCAGCCAGCCTCGCGGAGAAAGCTCGGGTTGCTGGAGAAACACAAGGACT ACGGTGAGAGAGAGAGCTCAGCAACCTGGGCGAAGACCCACCAGTAAAGC AGGGCACAAGAGTTATGCTGCAGCTGCTGCAATAATCAGCCCAATCATTG AATGGGCACACTCCTTTCGCCAGGCACTTGCGCGAAACGGACGCTGTCGT CAAAGTGGTGTATTGTATTACGATTCAGCGATTCAGACGCAAGTTTCCCG CGCAAGTCCGAAGGACACCAGGCCGGCGTTCTGGTTTGTAGTTGCACCGC ATTGCTACCCACCAGCGGCCAGCGGCCTCGTCTCCACAAGCACTCATCGT GTACCATTACAACTTACGGAGTACAACATTTGGTGTCATTTGGCTTATGC TTGCGCCATGCGCTCAGCTCCTATATTTCTGAATGCTGATGGCAGAGCCA CGACTACTACTGTAGTGTCGACGATTGTGTACACCTCGAAGGCACCATGA ACCCATGACCGACCGAGGTCGCAATACACCGGTGCCTGTCGCTACATCTA GTCCTGACTTTTGTTTTCTCTCATACAGCCGTGCCCCCTCCGTGTGCGTA AACGCGTGAGAGATCGAGACTCGCGTTTTTTTTTTCAAGTCTGGTCTAGC TGGACTGCCGTCTTTCTTTCCAACCACAAGACAACGACGAAGGCTATCTC GGTGACGAGGGCAACACGAGGATGTCGCATCCTCCTCGTTCGCTGCAGAC GATGATCACAACAACATCACAACAAACACTGCCGTCACGACAGTCGACTG CCTCGCCTTCCTTAAAACACGCCCTTTCGCTTACCGCCAACCATCTATCT CTGCCTGCCTTCCACTCGCCCTCTTCAGTTCTCCGAGCTCGCAACTATGG CAAGAAGCGGGATCGCATGCAGGCCCTCAAGCTCAAGGCGGCCATGAAGA ACCCCGACGAGTTCTACTTTGCGATGCACCGAAAGAAGACCGAGGGGGGC GTGCACGTGCTCGACGGCGCCGAGACTCTGCCGCACGACGTTGTTCAGGT GCGCAGAGGTGGTTGATGCAAGCGAGCGCGAGGAGGCTTGGGATGGGTTG GGGGTGGGAGATGTAGAGGGGCAACAGGGGGGGGGAGGTGGACTGGGTCG TGTTGCAGAGACGAACTCATCTGCATGTTATGTGGCATCGCCAAAAGGTA AGGGCAGACACGGAAGCAATATAGAAGGCCGTTGAGTTCTACTGTTTTTA TGCTTAGACGCCCGTTGTTTTTTGTTCAAGATCAAGACGAGTCGTTTTCT TCCAGCTCTACCGCGTTCTGACCTCTATCCCTGCCGTGCCGTGTCCTCCC TGTGTGCGACGATGTCCCCTCTATTCCCCGTTTTGTCGGTACTCCTAACG CACCCCTTTCTGCTCCCCGACGACAACGCCCGCATCAACAGCTGCTCAAG ACACAGGACCTGGGGTACGTGTCGACGCACCGATCGGCCGACGAACGAAA AGCGGCCAAGCTCCGGGAGTCCCTGCACATGCTGGAGGCGGGGCCCCGCA ACAAGCACACCATATTCTTGGACTCGGAGAAGGAGGCCAAAGAGTAAGTG CGAGACAGACAAACAGAGAGAGGGTGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGCCCGCGCGAAGGGGGATGAAGGAACGCG TGTGCGAGGACATGTTTGATGGCTGCGGGTGACCAGACGAACGTGCCCCG CAAGTGTTTGATTGACGGGCATACCTTGTTTGTGTGGAAGCTTTGATTGG TCATCGAAGAATGTTTTTCTCCCCGTCTGATGTTCTCAGTTCGTTGCTCT GGTCGTTGGAGGAGAATATCAGAGCCAAGCAGAGTTTGTCACCTTTGGCC CTATCTTTGTTATTTCATGTTTGTACTGCGAAAGGGTAACACTTACGCGA CCACGGTGTCGCTGCTCGGCTTTGTGGTTTTCATCCTCCCGTCTGTCGAT CTCGCCGTCGATCTCGCCCCACCGATGGACAAAGGTTTGACGTTGCGAAG CACTTCGACACGGTGCCGGAGCTGGCGGACAGGGCGTTCAACCGGCCTCG AAAGAACATGCTCGAGAAGGCACAGGTGAGAACTAGAAAACGAAGGATTG ATCCACAAAGCTTTGAACAGCATGCCAACCACCATCAAAATCCTAGACCG GACGAATGTTATGTTGCAGCGCTTGTGCTCGCCTTACGGTAGTGAGGTAC CTGGTAGGGTTGAAGAGGGGGTGTTAATTGCGGAATGTTGGTGTTGTAGT GTGTCGCAAGAGAGGTTCGAGTCATGTTTCTATGTCCTTGTTGTTTTGTC CCCTGCGTGCCATCTTGTTGCTGGAAATTCGCGCACGTTCCTCTTTCGAT CTTTTTGACCATGAGCGAACCCTCAACAATCTTTGTACGAGTCAAAAGAA TTTTTGGTGGAACTACGACGCGCCGGTAGGCTCTCCCTCACGATTCTTGG AAATCACGTTTGTTTTTTGTGCCCATCTCTCTCACGTTGTCATGAGGATA CATAGTCCATCACACTTAGCCTGTTCTATTTTTCTTGCGATTGCGCTCTC TTGTCATGCCTAGCTTGCGTTTCGTCTTCCCCGTGTCTTTTCGAAATTCA TTTGGTCCTAATAAGTGTCCCGATTGACCTCCTCCTCCCCCACCGCCTCG CCATCCCTCCGTGTCCATCTCTTGTGCTCTGCAGGTTACCGGAGCGACGA ACAGGAGACAGCTCAAGAAAGTGCTGAAGAAGCGAGACGCGTCGTACAGC GAGCTCATGCAGCGGTTGGAAAGGGTGGGTGGCCGACTTAAACCTGCTGT CATCAACCAATCACTAGAGTCGATCCGCCTCCGCATAGCCGTTAAAGCTT GTTCGGCGCAGAGCGAGTGCTATGCCCGCCACGGGTCGCACGATGCACCG CTCCGCGCGAAGCCTCTCGCGCTTGAGCGCGGCGCCTTTCTTACTTGCCT ACTACCGCACGCAGTTGTACTGTACGCAATCGCGCTGCTGTACGTCCGTG TTTCTATGTTCATTGATAATTTTTGTGGTCAGCCTACCGTCGTGATATGG TAAGCCGTTTCCCTAGGAGTGTAACAAGGTGCAGAACTCCGGGGATACTC CTTGCCTCAAGGTGTAGCGTACGACCGCGGACTTCGTCGGTGCGACCAGT GGAATGGGTGACGGGGGATCCGACTCGATTCTATTTCTACTATGTCCCCC CCCCCCCCCCCCCCCCGGCGGGTTCCGCCCCCCCCCCCCCCCTTTTTTCC AAATCTTTTTTTAAAAATTTTTTTTTTTTTTTTGTTTTTTTCACCNNNNN NNNNNGGGACTTGGTGGGGTGGGCCGGGGGAATGGGGGGCGGGGGGTGCG GTTTGGTTTTATTTCTCCTTTTGCCCCCCCCCCCCCCGTCGTGTGCGTGT CCGCACGTCGACCCCTGTTCTTCGCAAATTCCTGATATACACATTTATTT ATGCGTGTGCGTGTCACGCACACCTGCTGGCTTTGATTGCGCAGGCGGAG AAGATGAAGAAGGCAGAGGTGCACCTCGAGGCGCAGCGCAAGGTGATGAA CTCGAAGGGCACGAAGCGGAAGGTGCAGGAGGCCAAGGACGGCAGACCCG CGGTGTACCGGTGGAAGAAAGAACGGTCAAGATGAACAACCCATGCATAA AAAAAAAAAACAGATAGCCGATGGTTTTTCAGTATGCTGGGGTGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig129:10226..14021+

>mRNA_Ecto-sp13_S_contig129.2383.1 ID=mRNA_Ecto-sp13_S_contig129.2383.1|Name=mRNA_Ecto-sp13_S_contig129.2383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig129:10226..14021+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTCCCTTCGCAATGCTGTCAAGCGCGTGGAGCACAAAGAACGGGC
TCAGCCAGCCTCGCGGAGAAAGCTCGGGTTGCTGGAGAAACACAAGGACT
ACGTTCTCCGAGCTCGCAACTATGGCAAGAAGCGGGATCGCATGCAGGCC
CTCAAGCTCAAGGCGGCCATGAAGAACCCCGACGAGTTCTACTTTGCGAT
GCACCGAAAGAAGACCGAGGGGGGCGTGCACGTGCTCGACGGCGCCGAGA
CTCTGCCGCACGACGTTGTTCAGCTGCTCAAGACACAGGACCTGGGGTAC
GTGTCGACGCACCGATCGGCCGACGAACGAAAAGCGGCCAAGCTCCGGGA
GTCCCTGCACATGCTGGAGGCGGGGCCCCGCAACAAGCACACCATATTCT
TGGACTCGGAGAAGGAGGCCAAAGAGTTTGACGTTGCGAAGCACTTCGAC
ACGGTGCCGGAGCTGGCGGACAGGGCGTTCAACCGGCCTCGAAAGAACAT
GCTCGAGAAGGCACAGGTTACCGGAGCGACGAACAGGAGACAGCTCAAGA
AAGTGCTGAAGAAGCGAGACGCGTCGTACAGCGAGCTCATGCAGCGGTTG
GAAAGGGCGGAGAAGATGAAGAAGGCAGAGGTGCACCTCGAGGCGCAGCG
CAAGGTGATGAACTCGAAGGGCACGAAGCGGAAGGTGCAGGAGGCCAAGG
ACGGCAGACCCGCGGTGTACCGGTGGAAGAAAGAACGGTCAAGATGA
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