mRNA_Ecto-sp13_S_contig129.2383.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: D7FNH1_ECTSI (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH1_ECTSI) HSP 1 Score: 460 bits (1184), Expect = 6.480e-163 Identity = 245/248 (98.79%), Postives = 246/248 (99.19%), Query Frame = 1
Query: 1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 744
MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIF DSEKEAKEFDVAKHFDTVPELADRAFNRPRK+ LEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR
Sbjct: 1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFFDSEKEAKEFDVAKHFDTVPELADRAFNRPRKDTLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 248
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: A0A836CK24_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK24_9STRA) HSP 1 Score: 272 bits (696), Expect = 1.130e-88 Identity = 140/248 (56.45%), Postives = 187/248 (75.40%), Query Frame = 1
Query: 1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 744
MSSLRNAVKR HKERAQPASR K GLLEKH DYVLRAR+Y KRDR+ AL+LKA+++NPDEFYF MH+ KT+ GVH ++G+ +L H+ +LKTQD+ Y+ R+ D +KA +L+ LHML+A P+N HT+F+ ++++ + FD A++FDT PELA R FNRPR LE QV GA +R LKK LK+RDA+Y E+ R ERA KM +A HL AQR +M ++GT KV+ A+ G+P VY+WK++R++
Sbjct: 1 MSSLRNAVKRKTHKERAQPASRSKFGLLEKHSDYVLRARDYNAKRDRLNALRLKASLRNPDEFYFGMHKAKTKEGVHQVEGSSSLDHETAHMLKTQDMAYIHMKRAVDIKKAERLKAGLHMLDAPPQNTHTVFVKNKRQRRAFDAAEYFDTAPELAGRTFNRPRMATLESKQVLGAESRADLKKALKQRDAAYQEVEAREERARKMTRAAAHLAAQRALMTARGTVTKVKGAEKGQPPVYKWKRQRAK 248
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: A0A8K1CCZ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCZ2_PYTOL) HSP 1 Score: 245 bits (626), Expect = 4.600e-78 Identity = 136/248 (54.84%), Postives = 177/248 (71.37%), Query Frame = 1
Query: 7 SLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDG--AETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 744
SLRN VKR EHKER Q R+KLGLLEKHKDYVLRAR+Y KK+DR++ +KLKAA +NPDEFYF M+ +TE GVHV + +E L + +++LKTQDL Y+ R+ D RKA KL + LH ++A NKHT+F+DS ++ FDVA HFDT PELADRAFNR RK L+ + T+++QL+ + K+RDA Y EL RL RA K+++ L+ +RKV +KG KRKVQ+ RP VY+WKKER +
Sbjct: 2 SLRNVVKRREHKERGQLQERKKLGLLEKHKDYVLRARDYNKKQDRLRTMKLKAAFRNPDEFYFKMNTTRTEDGVHVSENNHSEKLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLTQGLHFIDAPKNNKHTVFVDSSEDLNTFDVATHFDTAPELADRAFNRLRKETLKTTTIQATTDKKQLRALTKERDAVYRELNDRLIRATKIQQMSDRLDLERKVQ-AKGKKRKVQDGDSSRPPVYKWKKERQK 248
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: K3WAT9_GLOUD (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAT9_GLOUD) HSP 1 Score: 240 bits (612), Expect = 6.460e-76 Identity = 136/251 (54.18%), Postives = 181/251 (72.11%), Query Frame = 1
Query: 1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVL--DGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEA-GPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 744
MSSLRN VKR EHKER Q R+KLGLLEKHKDYV RAR+Y KK+D ++AL +KAA +NPDEFYF M+ +TE GVHV + + L + +++LKTQDL Y+ R+ D RKA KL E LH ++A G NKH +F+DS+ E + FDVAKHFDTVPE+ADRAFNR RK+ L+ + +++ LKK+ +RDA Y EL RL+RA + + L+ +RKV +KG K K+++A+DG+PAVYRWKK+R +
Sbjct: 1 MSSLRNVVKRREHKERGQLRERKKLGLLEKHKDYVKRARDYNKKQDHLKALAVKAAFRNPDEFYFRMNSTRTEDGVHVSTHNHHKQLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLNEGLHFIDAAGKDNKHVVFVDSKDEVESFDVAKHFDTVPEIADRAFNRLRKDTLKTVSLPAVQDKKTLKKLGIERDAVYRELNDRLQRASTIDRMRAKLDLERKVQ-AKGKKMKIKDAEDGQPAVYRWKKQRQK 250
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: A0A5D6XJY8_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJY8_9STRA) HSP 1 Score: 238 bits (608), Expect = 2.600e-75 Identity = 130/248 (52.42%), Postives = 175/248 (70.56%), Query Frame = 1
Query: 7 SLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDG----AETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKER 738
SLRN VKR EHKER QP R+KLGLLEKHKDYV RAR+Y K+DR++ ++LKAA +NPDEFYF M+ +TEGGVHV D + L D +++LKTQD+ Y+ R+ D RKA KL LH ++A NKH +F+DSE + +FDVA HFDT PELADRAFNR R + L+ + ++ +++KK ++RD Y EL RLERA + + L+ +RKV +KG K K+++A++G+PAVYRWKK+R
Sbjct: 2 SLRNVVKRREHKERGQPQERKKLGLLEKHKDYVKRARDYNSKQDRLRTMQLKAAFRNPDEFYFRMNATRTEGGVHVSDNNRLDGKALTADALKVLKTQDVAYLHLKRAVDMRKAEKLNAGLHFIDAPTANKHVVFVDSEAQLAKFDVAAHFDTAPELADRAFNRVRMDALKTLALPAVSSAKEIKKRNRERDGVYRELSDRLERAATLDRMRAKLDLERKVQ-AKGKKMKIKDAENGQPAVYRWKKQR 248
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: A0A0P1B0R4_PLAHL (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0R4_PLAHL) HSP 1 Score: 229 bits (585), Expect = 7.860e-72 Identity = 132/251 (52.59%), Postives = 179/251 (71.31%), Query Frame = 1
Query: 1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVL--DGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEKAQVTG-ATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 744
MSSLRN VKR EHKER Q RRKLGLLEKHKDYV RA++Y K+ R++ L+LKAA++NPDEFY MH KTEGGVH+ + ++L + ++ LKTQDL Y+ R+ D RKA +L LH ++A NKHT+F+D +++ + FDVA++FDTVPELADRAFNR R+ LE ++ A + +Q K+ +RDA Y EL RL RA+K+ + L+ +RKV +KG KRKV+ A++G PAVYRWK++R +
Sbjct: 1 MSSLRNVVKRREHKERGQLRDRRKLGLLEKHKDYVKRAQDYNSKQKRLKMLQLKAALRNPDEFYHRMHNNKTEGGVHISTHNHLKSLSTEALRTLKTQDLAYLHLKRAVDLRKAERLNRGLHFVDAPKDNKHTVFVDDKEQVENFDVAQYFDTVPELADRAFNRIRRRDLEMVELPDMAASPKQKYKMQVERDALYRELRDRLTRAKKIGQMSAKLDLERKVQ-AKGRKRKVKAAENGMPAVYRWKQQRQK 250
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: D0NVW8_PHYIT (U3 small nucleolar RNA-associated protein 11 n=14 Tax=Phytophthora TaxID=4783 RepID=D0NVW8_PHYIT) HSP 1 Score: 228 bits (581), Expect = 3.160e-71 Identity = 132/251 (52.59%), Postives = 174/251 (69.32%), Query Frame = 1
Query: 1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVL--DGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEKAQVTG-ATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 744
MSSLRN VKR EHKER Q RRKLGLLEKHKDYV RAR+Y K+ R++ L+LKAA++NPDEFY M KTEGGVHV + +++ + ++ LKTQDL Y+ R+ D RKA +L LH ++A N HT+F+D E++ FDVA+HFDT PEL DRAFNR RK LE A++ A N +Q K+ ++DA Y EL RL RA K+ + L+ +RKV +KG K+KV+ A++G PAVYRWK++R +
Sbjct: 1 MSSLRNVVKRREHKERGQLRERRKLGLLEKHKDYVKRARDYNSKQKRLKTLQLKAALRNPDEFYHRMRGTKTEGGVHVSTHNHIKSVETEALRTLKTQDLAYLHMKRAVDLRKAERLNRGLHFVDAPKNNNHTVFVDDEEQVDSFDVAEHFDTAPELVDRAFNRIRKRDLETAELPDLAANPKQKYKMQVEKDAMYRELRDRLARANKLGQMSAKLDLERKVQ-AKGRKKKVKAAENGMPAVYRWKQQRQK 250
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: A0A7S2W8G3_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8G3_9STRA) HSP 1 Score: 228 bits (580), Expect = 5.780e-71 Identity = 128/259 (49.42%), Postives = 180/259 (69.50%), Query Frame = 1
Query: 1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVL---DGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLE--------KAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 744
M+SLRNA+ R H+ER+Q ASR LGLLEK KDYV RAR++ +K +++ L+ KA +NPDEFYF M +KT+ GVHV DGA+ L HD + L+K+QDLGY+S ++ D+RK+ +L+ LHML P N+HT+FLD K+ + FD A+HFDT+PELA RAFNRPR+ E V +T+ +Q KK++K +D +Y +L +RLER+EK++K E ++KVM KG KRKV+ + G P VY+WK++R+R
Sbjct: 1 MASLRNALPRRTHRERSQVASRAHLGLLEKKKDYVERARDFQRKTGKIKNLRKKARERNPDEFYFGMVNQKTKDGVHVAERNDGADKLSHDDILLMKSQDLGYLSMKKAVDDRKSERLQSGLHMLLDKPLNQHTVFLDKSKDVETFDAAEHFDTMPELAGRAFNRPRRKAFEADKEGSIASTPVMTSTSSKQYKKIMKSKDKAYEDLAERLERSEKLRKLIQRKEVEKKVMG-KGRKRKVEGSSSGAPPVYKWKRKRAR 258
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: A0A3R7K0P1_9STRA (U3 small nucleolar RNA-associated protein 11 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K0P1_9STRA) HSP 1 Score: 228 bits (580), Expect = 8.700e-71 Identity = 132/251 (52.59%), Postives = 176/251 (70.12%), Query Frame = 1
Query: 1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVL--DGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEKAQVTG-ATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 744
MSSLRN VKR EHKER Q RRKLGLLEKHKDYV RA++Y +K+ ++ L+LKA+M+NPDEFY+ M KTEGGVH+ + A+ L + ++ LKTQDL Y+ R+ D RKA KL LH ++ NKHT+F+D + + +FDVA+HFDT PELADRAFNR RK LE ++ A + +Q K+ ++DA Y EL RLERA+K+ + L+ +RKV +KG K KV+ A+DG PAVYRWK++R +
Sbjct: 22 MSSLRNVVKRREHKERGQLRERRKLGLLEKHKDYVKRAKDYNQKQKHLRNLQLKASMRNPDEFYYKMIHGKTEGGVHISTHNHAKQLNAEALRTLKTQDLAYLHMKRAVDLRKAEKLNRGLHFIDTPKNNKHTVFVDEDDDVNKFDVAEHFDTAPELADRAFNRLRKADLETMELPDLAADPKQKYKMQVEKDAMYRELRDRLERAKKIGRMSAKLDLERKVQ-AKGKKMKVKGAEDGMPAVYRWKQQRQK 271
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Match: A0A4D9DA46_9STRA (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA46_9STRA) HSP 1 Score: 226 bits (576), Expect = 1.860e-70 Identity = 130/247 (52.63%), Postives = 175/247 (70.85%), Query Frame = 1
Query: 4 SSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAE-TLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFLDSEKEAKEFDVAKHFDTVPELADRAFNRPRKNMLEK-AQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKER 738
+SLRNA+ R +KER+QPA+R+K GLLEKHKDYV RA +Y +K + +L+ KAA +NPDEFYFAM + +T+ GVH + AE +LPHD + LLKTQD+ YV+ R+ D +KA KL+ LH L NKHT+F+D+E E + FD AKHF T P L RAFNRP+ LE V G N +LKKV K R+ +Y+EL +RL+R+ K+ H++ ++ VM KG KRKVQEA+DG+PAV++WK+ER
Sbjct: 4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKSKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVTMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTEAEVETFDPAKHFGTDPALVTRAFNRPKLETLETPGAVLGVANVGELKKVRKAREKAYTELGERLKRSLSFKEVLEHMQVEKNVMG-KGRKRKVQEAEDGKPAVFKWKRER 249 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig129.2383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig129.2383.1 >prot_Ecto-sp13_S_contig129.2383.1 ID=prot_Ecto-sp13_S_contig129.2383.1|Name=mRNA_Ecto-sp13_S_contig129.2383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQAback to top mRNA from alignment at Ecto-sp13_S_contig129:10226..14021+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig129.2383.1 ID=mRNA_Ecto-sp13_S_contig129.2383.1|Name=mRNA_Ecto-sp13_S_contig129.2383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3796bp|location=Sequence derived from alignment at Ecto-sp13_S_contig129:10226..14021+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig129:10226..14021+ >mRNA_Ecto-sp13_S_contig129.2383.1 ID=mRNA_Ecto-sp13_S_contig129.2383.1|Name=mRNA_Ecto-sp13_S_contig129.2383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig129:10226..14021+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |