mRNA_Ecto-sp13_S_contig1289.2378.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1289.2378.1
Unique NamemRNA_Ecto-sp13_S_contig1289.2378.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1289.2378.1 vs. uniprot
Match: D8LQ22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ22_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 2.320e-66
Identity = 105/110 (95.45%), Postives = 105/110 (95.45%), Query Frame = 1 
Query:    1 AWSCCGKPVLSAGRGCEPREPLATPEDLLLDTIDPRSRLGQPLDFRDFLPQIAWFGLSPDPVRPLPGSLGDDTLRPHTAPERLTDAAGQWSPQRWAGGYANREYDRRASR 330
            AWSCCGKPVLSAGRGCEPREPLATPEDLLLDTIDPRSRLGQPLDFRDFLPQIAW GLSPDPVRPLPGS GD TLRPHTAPERLTDAAGQWSPQ WAGG ANREYDRRASR
Sbjct:  370 AWSCCGKPVLSAGRGCEPREPLATPEDLLLDTIDPRSRLGQPLDFRDFLPQIAWLGLSPDPVRPLPGSPGDGTLRPHTAPERLTDAAGQWSPQGWAGGDANREYDRRASR 479
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1289.2378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ22_ECTSI2.320e-6695.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1289contigEcto-sp13_S_contig1289:14355..15934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size334
Hectar predicted targeting categoryother localisation
Exons3
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462689.5991657-CDS-Ecto-sp13_S_contig1289:14356..145021681462689.5991657-CDS-Ecto-sp13_S_contig1289:14356..14502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1289 14357..14502 -
1681462689.6097562-CDS-Ecto-sp13_S_contig1289:14994..151061681462689.6097562-CDS-Ecto-sp13_S_contig1289:14994..15106Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1289 14995..15106 -
1681462689.618984-CDS-Ecto-sp13_S_contig1289:15862..159341681462689.618984-CDS-Ecto-sp13_S_contig1289:15862..15934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1289 15863..15934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1289.2378.1prot_Ecto-sp13_S_contig1289.2378.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1289 14357..15934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1289.2378.1

>prot_Ecto-sp13_S_contig1289.2378.1 ID=prot_Ecto-sp13_S_contig1289.2378.1|Name=mRNA_Ecto-sp13_S_contig1289.2378.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
AWSCCGKPVLSAGRGCEPREPLATPEDLLLDTIDPRSRLGQPLDFRDFLP
QIAWFGLSPDPVRPLPGSLGDDTLRPHTAPERLTDAAGQWSPQRWAGGYA
NREYDRRASR
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mRNA from alignment at Ecto-sp13_S_contig1289:14355..15934-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1289.2378.1 ID=mRNA_Ecto-sp13_S_contig1289.2378.1|Name=mRNA_Ecto-sp13_S_contig1289.2378.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1580bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1289:14355..15934- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTGGTCGTGCTGCGGGAAGCCGGTCTTGAGCGCTGGCCGCGGGTGCGA
GCCGCGGGAGCCGCTCGCAACGGTGAGAGACGTTTGTTTTTTCTGTAGTG
TTCGCCAGCCGGAGCGCACGTGGCCTTCGTAGTGCGCCGCACATTTAGAG
TCGCAGCTCAACGATGATGGACGGCCGCCCGCGGGGCCCGCTGGCCAGGG
ATATGACGAAGGCGTCGGGGGGTCCGCCGAAAGGAGTGGAACATCCATTC
ACCGGCTTTCCAAATGTCTGTTACGCTTATGGTACATGGGACCACGCCTG
ATATTCCCACTCTCGTCGTGGGAAGCAACCAATCAGAGGCAAAACGAAAA
GCACATACTATTGAAAAAACGAACCAAGCGGCAACCTTTCGTTCGATTCC
CAGTAACACCGTTGAAGCGAAAGCAGCCATAGCGGTTCTGCTTGCAGCGA
CAGCCCTGGGTCGACGTGCGAAGCTTTATTTCGTGGCACTCTACTTACGT
GCCTACCACTGCCGCCGCTGCCGTCGACCCAAGCGGACGCTTGGATACTT
AACTTCTCGACCGTCGCTCCTTTGTTTTTCCATCGTTGGAGAACAAAAAT
TGTGGTTGATTTTGTTGAATAGTCTAGAAGCCGACACCAAACCATTACAC
TGTAACAGTCAGCGCTGACCTAGTCAAATGTTTGGTTTCGGTTTGTATAG
TTCGTTTGTGCTGCAACACGCCCAAATCATCTCCACGTATGCCTAACAAA
ATGTTATCGGTGCCATGCTGGCCCTCTTGTAACGCTAGCCTTCCACTCTC
TCGTTTCCGTCGGGCGTGGGTGCGACAGCCGGAAGACCTGCTCCTTGATA
CGATCGATCCGAGGTCGAGATTGGGCCAGCCGTTGGACTTTCGGGACTTC
CTCCCCCAGATAGCTTGGTTTGGGCTGTCGCCAGACCCGGGTAAGCTCTT
TTTTTGCTTTTTTCGCGCCCGCCCCGTCCATCTGACATCCACCGTCGAAG
TAGCTGCATATCTCCGCTACCCTGTGATAATCAAGGGCGGGGCAACCACG
CACGGAAAGGAACACAGCAGAGTACCTCTTCCAGACTAAGCGGCGATTCT
ATAGTCGTACTGATTGTCGGGCTATTGTAAAAGACATTCCTACATTTGGC
GATGCCGCCTGGCTCGCACCCTTGCCCTTCACCCCACAGATATCTAAGAC
CCGCCCCGTCGACTGAATCATTTCCCATTTCTGCCTGGTCGTGAAGAGTG
GCTTTCACCCACCGCGGGCGGACTCTTGCGATAAACATCGCTTGGATCAG
CCGATCTCCTCCCCGTAGAACTCACCAAAGGGCAAAGGAAAACGCTTGTT
TGATTTCTCTATCAATCCCGCGCGGTGTGCCGTGGTCTGGTGTTGATGTT
GCCTTGCGGTTACGACGAAACTTCTTCATCAGTGCGCCCTCTGCCCGGAA
GCCTGGGGGACGACACTCTCCGCCCCCACACCGCCCCGGAAAGGCTGACG
GACGCTGCCGGGCAGTGGAGCCCTCAAAGGTGGGCAGGAGGGTACGCGAA
TAGAGAGTACGACCGACGAGCATCTAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1289:14355..15934-

>mRNA_Ecto-sp13_S_contig1289.2378.1 ID=mRNA_Ecto-sp13_S_contig1289.2378.1|Name=mRNA_Ecto-sp13_S_contig1289.2378.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1289:14355..15934- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTGGTCGTGCTGCGGGAAGCCGGTCTTGAGCGCTGGCCGCGGGTGCGA
GCCGCGGGAGCCGCTCGCAACGCCGGAAGACCTGCTCCTTGATACGATCG
ATCCGAGGTCGAGATTGGGCCAGCCGTTGGACTTTCGGGACTTCCTCCCC
CAGATAGCTTGGTTTGGGCTGTCGCCAGACCCGGTGCGCCCTCTGCCCGG
AAGCCTGGGGGACGACACTCTCCGCCCCCACACCGCCCCGGAAAGGCTGA
CGGACGCTGCCGGGCAGTGGAGCCCTCAAAGGTGGGCAGGAGGGTACGCG
AATAGAGAGTACGACCGACGAGCATCTAGG
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