prot_Ecto-sp13_S_contig12889.2376.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12889.2376.1
Unique Nameprot_Ecto-sp13_S_contig12889.2376.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length52
Homology
BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: D7G0C8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0C8_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.220e-19
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 47
            LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV
Sbjct:   87 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 133          
BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: UPI000D176C49 (Fanconi anemia group D2 protein-like isoform X2 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=UPI000D176C49)

HSP 1 Score: 60.1 bits (144), Expect = 3.270e-9
Identity = 29/47 (61.70%), Postives = 41/47 (87.23%), Query Frame = 0
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 47
            +PRL+LNQ ++L+ LVDS SLT K+LEVLT+ P+ L++E+IS+LPEV
Sbjct:  157 IPRLILNQFKWLNFLVDSKSLTEKLLEVLTICPLALKKEIISFLPEV 203          
BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: A0A2K1KVD6_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KVD6_PHYPA)

HSP 1 Score: 60.1 bits (144), Expect = 3.270e-9
Identity = 29/47 (61.70%), Postives = 41/47 (87.23%), Query Frame = 0
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 47
            +PRL+LNQ ++L+ LVDS SLT K+LEVLT+ P+ L++E+IS+LPEV
Sbjct:  157 IPRLILNQFKWLNFLVDSKSLTEKLLEVLTICPLALKKEIISFLPEV 203          
BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: A0A836CD26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD26_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.300e-9
Identity = 29/45 (64.44%), Postives = 38/45 (84.44%), Query Frame = 0
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLP 45
            LPRL+L Q+R+LDHLVD   LT K+LEVL VLP+ L+R++I+YLP
Sbjct:  262 LPRLILTQMRWLDHLVDPGGLTEKLLEVLPVLPLALERDLIAYLP 306          
BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: A0A2R6XWB7_MARPO (Uncharacterized protein n=5 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XWB7_MARPO)

HSP 1 Score: 58.9 bits (141), Expect = 8.350e-9
Identity = 26/47 (55.32%), Postives = 41/47 (87.23%), Query Frame = 0
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 47
            +PRL+L+  R+LD++VDS +LT K+LE++T+ PV L++E+IS+LPEV
Sbjct:  162 IPRLILSHFRWLDYVVDSRNLTEKLLEIITICPVGLKKEIISFLPEV 208          
BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: A0A8K0EUA3_BRALA (FANCD2 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EUA3_BRALA)

HSP 1 Score: 53.9 bits (128), Expect = 4.880e-7
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 0
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 47
            +PRL+LNQ R+LD +VDS  L RK+LE+L +  V++QR++IS LPEV
Sbjct:  171 IPRLILNQFRWLDRIVDSKLLCRKMLEMLGITTVDIQRDIISCLPEV 217          
BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: H3BFD2_LATCH (FA complementation group D2 n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3BFD2_LATCH)

HSP 1 Score: 53.9 bits (128), Expect = 4.890e-7
Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 0
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 47
            +PRL++NQ ++LD +VDS  LT KI+++++V PV +QR++I+ LPE+
Sbjct:  175 MPRLIINQFKWLDRIVDSKELTSKIMQLISVAPVEIQRDIITSLPEI 221          
BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: UPI001FB14A57 (Fanconi anemia group D2 protein homolog n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB14A57)

HSP 1 Score: 53.9 bits (128), Expect = 4.890e-7
Identity = 25/47 (53.19%), Postives = 38/47 (80.85%), Query Frame = 0
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 47
            +PRL+LNQ R+LD LVDS + + K+L++L+V PV L++E+I  LPE+
Sbjct:  183 MPRLILNQFRWLDFLVDSEAFSEKLLQILSVCPVYLKKELIGSLPEI 229          
BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: A0A388KEW4_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KEW4_CHABU)

HSP 1 Score: 53.1 bits (126), Expect = 9.080e-7
Identity = 23/47 (48.94%), Postives = 38/47 (80.85%), Query Frame = 0
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 47
            LPRL++NQ R+LD ++D  +LTRK+LE++ + P+ ++R++I  LPEV
Sbjct:  195 LPRLIINQFRWLDFIIDGPALTRKLLEIVPICPLLIKRDIIGILPEV 241          
BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: A0A388KEW9_CHABU (Uncharacterized protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388KEW9_CHABU)

HSP 1 Score: 53.1 bits (126), Expect = 9.140e-7
Identity = 23/47 (48.94%), Postives = 38/47 (80.85%), Query Frame = 0
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 47
            LPRL++NQ R+LD ++D  +LTRK+LE++ + P+ ++R++I  LPEV
Sbjct:  195 LPRLIINQFRWLDFIIDGPALTRKLLEIVPICPLLIKRDIIGILPEV 241          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0C8_ECTSI2.220e-19100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI000D176C493.270e-961.70Fanconi anemia group D2 protein-like isoform X2 n=... [more]
A0A2K1KVD6_PHYPA3.270e-961.70Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A836CD26_9STRA4.300e-964.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2R6XWB7_MARPO8.350e-955.32Uncharacterized protein n=5 Tax=Marchantia polymor... [more]
A0A8K0EUA3_BRALA4.880e-757.45FANCD2 protein n=1 Tax=Branchiostoma lanceolatum T... [more]
H3BFD2_LATCH4.890e-748.94FA complementation group D2 n=2 Tax=Latimeria chal... [more]
UPI001FB14A574.890e-753.19Fanconi anemia group D2 protein homolog n=1 Tax=Im... [more]
A0A388KEW4_CHABU9.080e-748.94Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388KEW9_CHABU9.140e-748.94Uncharacterized protein n=2 Tax=Chara braunii TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029448Fanconi anaemia protein FANCD2PFAMPF14631FancD2coord: 1..47
e-value: 6.5E-12
score: 43.8
IPR029448Fanconi anaemia protein FANCD2PANTHERPTHR32086FAMILY NOT NAMEDcoord: 1..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12889contigEcto-sp13_S_contig12889:852..1007 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12889.2376.1mRNA_Ecto-sp13_S_contig12889.2376.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12889 852..1007 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12889.2376.1 ID=prot_Ecto-sp13_S_contig12889.2376.1|Name=mRNA_Ecto-sp13_S_contig12889.2376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEVCFR
F*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029448FANCD2