mRNA_Ecto-sp13_S_contig12889.2376.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12889.2376.1
Unique NamemRNA_Ecto-sp13_S_contig12889.2376.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: D7G0C8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0C8_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.220e-19
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 141
            LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV
Sbjct:   87 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 133
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BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: UPI000D176C49 (Fanconi anemia group D2 protein-like isoform X2 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=UPI000D176C49)

HSP 1 Score: 60.1 bits (144), Expect = 3.270e-9
Identity = 29/47 (61.70%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 141
            +PRL+LNQ ++L+ LVDS SLT K+LEVLT+ P+ L++E+IS+LPEV
Sbjct:  157 IPRLILNQFKWLNFLVDSKSLTEKLLEVLTICPLALKKEIISFLPEV 203
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BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: A0A2K1KVD6_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KVD6_PHYPA)

HSP 1 Score: 60.1 bits (144), Expect = 3.270e-9
Identity = 29/47 (61.70%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 141
            +PRL+LNQ ++L+ LVDS SLT K+LEVLT+ P+ L++E+IS+LPEV
Sbjct:  157 IPRLILNQFKWLNFLVDSKSLTEKLLEVLTICPLALKKEIISFLPEV 203
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BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: A0A836CD26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD26_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.300e-9
Identity = 29/45 (64.44%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLP 135
            LPRL+L Q+R+LDHLVD   LT K+LEVL VLP+ L+R++I+YLP
Sbjct:  262 LPRLILTQMRWLDHLVDPGGLTEKLLEVLPVLPLALERDLIAYLP 306
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BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: A0A2R6XWB7_MARPO (Uncharacterized protein n=5 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XWB7_MARPO)

HSP 1 Score: 58.9 bits (141), Expect = 8.350e-9
Identity = 26/47 (55.32%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 141
            +PRL+L+  R+LD++VDS +LT K+LE++T+ PV L++E+IS+LPEV
Sbjct:  162 IPRLILSHFRWLDYVVDSRNLTEKLLEIITICPVGLKKEIISFLPEV 208
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BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: A0A8K0EUA3_BRALA (FANCD2 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EUA3_BRALA)

HSP 1 Score: 53.9 bits (128), Expect = 4.880e-7
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 141
            +PRL+LNQ R+LD +VDS  L RK+LE+L +  V++QR++IS LPEV
Sbjct:  171 IPRLILNQFRWLDRIVDSKLLCRKMLEMLGITTVDIQRDIISCLPEV 217
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BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: H3BFD2_LATCH (FA complementation group D2 n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3BFD2_LATCH)

HSP 1 Score: 53.9 bits (128), Expect = 4.890e-7
Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 141
            +PRL++NQ ++LD +VDS  LT KI+++++V PV +QR++I+ LPE+
Sbjct:  175 MPRLIINQFKWLDRIVDSKELTSKIMQLISVAPVEIQRDIITSLPEI 221
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BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: UPI001FB14A57 (Fanconi anemia group D2 protein homolog n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB14A57)

HSP 1 Score: 53.9 bits (128), Expect = 4.890e-7
Identity = 25/47 (53.19%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 141
            +PRL+LNQ R+LD LVDS + + K+L++L+V PV L++E+I  LPE+
Sbjct:  183 MPRLILNQFRWLDFLVDSEAFSEKLLQILSVCPVYLKKELIGSLPEI 229
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BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: A0A388KEW4_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KEW4_CHABU)

HSP 1 Score: 53.1 bits (126), Expect = 9.080e-7
Identity = 23/47 (48.94%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 141
            LPRL++NQ R+LD ++D  +LTRK+LE++ + P+ ++R++I  LPEV
Sbjct:  195 LPRLIINQFRWLDFIIDGPALTRKLLEIVPICPLLIKRDIIGILPEV 241
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BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Match: A0A388KEW9_CHABU (Uncharacterized protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388KEW9_CHABU)

HSP 1 Score: 53.1 bits (126), Expect = 9.140e-7
Identity = 23/47 (48.94%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 141
            LPRL++NQ R+LD ++D  +LTRK+LE++ + P+ ++R++I  LPEV
Sbjct:  195 LPRLIINQFRWLDFIIDGPALTRKLLEIVPICPLLIKRDIIGILPEV 241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12889.2376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0C8_ECTSI2.220e-19100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI000D176C493.270e-961.70Fanconi anemia group D2 protein-like isoform X2 n=... [more]
A0A2K1KVD6_PHYPA3.270e-961.70Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A836CD26_9STRA4.300e-964.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2R6XWB7_MARPO8.350e-955.32Uncharacterized protein n=5 Tax=Marchantia polymor... [more]
A0A8K0EUA3_BRALA4.880e-757.45FANCD2 protein n=1 Tax=Branchiostoma lanceolatum T... [more]
H3BFD2_LATCH4.890e-748.94FA complementation group D2 n=2 Tax=Latimeria chal... [more]
UPI001FB14A574.890e-753.19Fanconi anemia group D2 protein homolog n=1 Tax=Im... [more]
A0A388KEW4_CHABU9.080e-748.94Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388KEW9_CHABU9.140e-748.94Uncharacterized protein n=2 Tax=Chara braunii TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12889contigEcto-sp13_S_contig12889:852..1007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score90.5
Seed ortholog evalue2.5e-16
Seed eggNOG ortholog2880.D7G0C8
Preferred nameFANCD2
Model size156
KEGG koko:K10891
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0000280,GO:0000793,GO:0002682,GO:0002694,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006289,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007093,GO:0007127,GO:0007129,GO:0007275,GO:0007276,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009653,GO:0009887,GO:0009889,GO:0009966,GO:0009987,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010646,GO:0016043,GO:0016604,GO:0019219,GO:0019222,GO:0019827,GO:0019899,GO:0019953,GO:0022402,GO:0022414,GO:0023051,GO:0031323,GO:0031326,GO:0031347,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0033554,GO:0034599,GO:0034641,GO:0036297,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0045132,GO:0045143,GO:0045580,GO:0045589,GO:0045595,GO:0045619,GO:0045786,GO:0045930,GO:0046483,GO:0048285,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048731,GO:0048854,GO:0048856,GO:0050727,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051052,GO:0051090,GO:0051171,GO:0051239,GO:0051249,GO:0051252,GO:0051276,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060322,GO:0061982,GO:0065007,GO:0065009,GO:0070013,GO:0070182,GO:0070192,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0090329,GO:0097150,GO:0098727,GO:0098813,GO:0140013,GO:1901360,GO:1902105,GO:1903046,GO:1903047,GO:1903506,GO:1903706,GO:2000026,GO:2000112,GO:2000348,GO:2001141
Exons1
EggNOG free text desc.DNA polymerase binding
EggNOG OGsKOG4712@1,KOG4712@2759
Cds size156
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462689.4107454-CDS-Ecto-sp13_S_contig12889:851..10071681462689.4107454-CDS-Ecto-sp13_S_contig12889:851..1007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12889 852..1007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12889.2376.1prot_Ecto-sp13_S_contig12889.2376.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12889 852..1007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12889.2376.1

>prot_Ecto-sp13_S_contig12889.2376.1 ID=prot_Ecto-sp13_S_contig12889.2376.1|Name=mRNA_Ecto-sp13_S_contig12889.2376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEVCFR
F*
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mRNA from alignment at Ecto-sp13_S_contig12889:852..1007-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12889.2376.1 ID=mRNA_Ecto-sp13_S_contig12889.2376.1|Name=mRNA_Ecto-sp13_S_contig12889.2376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12889:852..1007- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCCTCGGCTGGTGCTGAACCAAGTCCGCTTTCTCGACCACCTCGTCGA
CAGCACTTCCCTCACCAGGAAAATTCTGGAGGTGTTGACGGTGCTGCCGG
TAAACCTCCAGCGAGAGATGATCTCCTACCTGCCGGAGGTGTGTTTTCGT
TTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12889:852..1007-

>mRNA_Ecto-sp13_S_contig12889.2376.1 ID=mRNA_Ecto-sp13_S_contig12889.2376.1|Name=mRNA_Ecto-sp13_S_contig12889.2376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12889:852..1007- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCCTCGGCTGGTGCTGAACCAAGTCCGCTTTCTCGACCACCTCGTCGA
CAGCACTTCCCTCACCAGGAAAATTCTGGAGGTGTTGACGGTGCTGCCGG
TAAACCTCCAGCGAGAGATGATCTCCTACCTGCCGGAGGTGTGTTTTCGT
TTTTAG
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