prot_Ecto-sp13_S_contig12834.2339.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12834.2339.1
Unique Nameprot_Ecto-sp13_S_contig12834.2339.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length344
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12834.2339.1 vs. uniprot
Match: D7G2R0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R0_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 1.440e-102
Identity = 293/353 (83.00%), Postives = 298/353 (84.42%), Query Frame = 0 
Query:    1 MTMSGRTRSCLSAVIMLLAAAMQTEAFVAGPVIAGRRTMVSMSSLKEEA---QPARSSRWGASSSRPIGDGFELSVAEKSFTEMLREKKAKGSFFAPSSEAAANADEVAASXXXXXXXXXXXXXXXXEASHQANLERQKLAFDDEAKPFIAPGSVSTPXXXXXXXXXXGSVTPPGGVSNPAXXXXXXXXXXXXXXXX------SAPAAPPAAPVSSPAAXXXXXXXXXXXXAXXXXXAAAAAXXXXXXXXXXXXXXTLAAKAAAPXXXXXXXXXXXXAAAPAAGAGKKWEPRPDWKSSAGSAAPSRPAVSSXXXXXXXXXXAAAAVSRPSSGGPAKATFNPKADAPWKASGGG 344
            MTMSGRTRSCLSAVIMLLAAAMQTEAFVAGPV+AGRRT VSMSSL EEA   QPARSSRWGASSSRP+GDGFELSVAEKSFTEMLREKKAKGSFFAPSSEAAANADEVAASXXXXXXXXXXXXXXXXEA+HQANLERQKLAFDDEAKPF+APGS STP           SV+ PG      XXXXXXXXXXXXXX        SAPAAPPAAPVSSPAAXXXXXXXXXXXX XXXXXAAAAAXXXXXXXXXXXXXXTLAAKAAAP   XXXXXXXXXAAAPAAGAGKKWEPRPDWKSSAGSAAPSR     XXXXXXXXXX              KATFNPKADAPWKASGGG
Sbjct:    1 MTMSGRTRSCLSAVIMLLAAAMQTEAFVAGPVMAGRRTAVSMSSLNEEASSAQPARSSRWGASSSRPVGDGFELSVAEKSFTEMLREKKAKGSFFAPSSEAAANADEVAASXXXXXXXXXXXXXXXXEATHQANLERQKLAFDDEAKPFVAPGSASTP-----------SVSTPGSXXXXXXXXXXXXXXXXXXXDPASVGRPSAPAAPPAAPVSSPAAXXXXXXXXXXXXXXXXXXAAAAAXXXXXXXXXXXXXXTLAAKAAAPVAPXXXXXXXXXAAAPAAGAGKKWEPRPDWKSSAGSAAPSRXXXXXXXXXXXXXXXXXXXXX--------KATFNPKADAPWKASGGG 334
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BLAST of mRNA_Ecto-sp13_S_contig12834.2339.1 vs. uniprot
Match: A0A6H5JPP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP9_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 8.020e-5
Identity = 44/98 (44.90%), Postives = 57/98 (58.16%), Query Frame = 0 
Query:    1 MTMSGRTRSCLSAVIMLLAAAMQTEAFVAGPVIAGRRTMVSMSSLKEEAQPARSSRWGASSSRPIGDGFELSVAEKSFTEMLREKKAKGSFFAPSSEA 98
            MTM G+T+SCLSA+++LL AA+Q + FV GPV A  RT  S SSL + A    SSRW  SSS+     +E         E +R ++ K S  A S EA
Sbjct:    1 MTMDGKTKSCLSALVVLLGAAIQADGFVVGPV-APVRTAGSSSSLTK-ASLGTSSRWATSSSKLQSSPYE---------EYMRTRQQKESGMAVSPEA 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12834.2339.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2R0_ECTSI1.440e-10283.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JPP9_9PHAE8.020e-544.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..344
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.815
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12834contigEcto-sp13_S_contig12834:2..4754 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12834.2339.1mRNA_Ecto-sp13_S_contig12834.2339.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12834 2..4754 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12834.2339.1 ID=prot_Ecto-sp13_S_contig12834.2339.1|Name=mRNA_Ecto-sp13_S_contig12834.2339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=344bp
MTMSGRTRSCLSAVIMLLAAAMQTEAFVAGPVIAGRRTMVSMSSLKEEAQ
PARSSRWGASSSRPIGDGFELSVAEKSFTEMLREKKAKGSFFAPSSEAAA
NADEVAASAAAEAVEAANAAAAEAEASHQANLERQKLAFDDEAKPFIAPG
SVSTPSVSTPSVSTPGSVTPPGGVSNPAAVSTPRVTDPASVGRPSAPAAP
PAAPVSSPAAPRVTDPASIGRPAPPAPPAAAAAPVSSPAAPKVTDPATLA
AKAAAPVAPPAAPASRPAAAAPAAGAGKKWEPRPDWKSSAGSAAPSRPAV
SSPSRPAVSSPAAAAAVSRPSSGGPAKATFNPKADAPWKASGGG
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