mRNA_Ecto-sp13_S_contig12834.2339.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12834.2339.1
Unique NamemRNA_Ecto-sp13_S_contig12834.2339.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12834.2339.1 vs. uniprot
Match: D7G2R0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R0_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 1.440e-102
Identity = 293/353 (83.00%), Postives = 298/353 (84.42%), Query Frame = 1 
Query:    1 MTMSGRTRSCLSAVIMLLAAAMQTEAFVAGPVIAGRRTMVSMSSLKEEA---QPARSSRWGASSSRPIGDGFELSVAEKSFTEMLREKKAKGSFFAPSSEAAANADEVAASXXXXXXXXXXXXXXXXEASHQANLERQKLAFDDEAKPFIAPGSVSTPXXXXXXXXXXGSVTPPGGVSNPAXXXXXXXXXXXXXXXX------SAPAAPPAAPVSSPAAXXXXXXXXXXXXAXXXXXAAAAAXXXXXXXXXXXXXXTLAAKAAAPXXXXXXXXXXXXAAAPAAGAGKKWEPRPDWKSSAGSAAPSRPAVSSXXXXXXXXXXAAAAVSRPSSGGPAKATFNPKADAPWKASGGG 1032
            MTMSGRTRSCLSAVIMLLAAAMQTEAFVAGPV+AGRRT VSMSSL EEA   QPARSSRWGASSSRP+GDGFELSVAEKSFTEMLREKKAKGSFFAPSSEAAANADEVAASXXXXXXXXXXXXXXXXEA+HQANLERQKLAFDDEAKPF+APGS STP           SV+ PG      XXXXXXXXXXXXXX        SAPAAPPAAPVSSPAAXXXXXXXXXXXX XXXXXAAAAAXXXXXXXXXXXXXXTLAAKAAAP   XXXXXXXXXAAAPAAGAGKKWEPRPDWKSSAGSAAPSR     XXXXXXXXXX              KATFNPKADAPWKASGGG
Sbjct:    1 MTMSGRTRSCLSAVIMLLAAAMQTEAFVAGPVMAGRRTAVSMSSLNEEASSAQPARSSRWGASSSRPVGDGFELSVAEKSFTEMLREKKAKGSFFAPSSEAAANADEVAASXXXXXXXXXXXXXXXXEATHQANLERQKLAFDDEAKPFVAPGSASTP-----------SVSTPGSXXXXXXXXXXXXXXXXXXXDPASVGRPSAPAAPPAAPVSSPAAXXXXXXXXXXXXXXXXXXAAAAAXXXXXXXXXXXXXXTLAAKAAAPVAPXXXXXXXXXAAAPAAGAGKKWEPRPDWKSSAGSAAPSRXXXXXXXXXXXXXXXXXXXXX--------KATFNPKADAPWKASGGG 334
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BLAST of mRNA_Ecto-sp13_S_contig12834.2339.1 vs. uniprot
Match: A0A6H5JPP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP9_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 8.020e-5
Identity = 44/98 (44.90%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:    1 MTMSGRTRSCLSAVIMLLAAAMQTEAFVAGPVIAGRRTMVSMSSLKEEAQPARSSRWGASSSRPIGDGFELSVAEKSFTEMLREKKAKGSFFAPSSEA 294
            MTM G+T+SCLSA+++LL AA+Q + FV GPV A  RT  S SSL + A    SSRW  SSS+     +E         E +R ++ K S  A S EA
Sbjct:    1 MTMDGKTKSCLSALVVLLGAAIQADGFVVGPV-APVRTAGSSSSLTK-ASLGTSSRWATSSSKLQSSPYE---------EYMRTRQQKESGMAVSPEA 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12834.2339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2R0_ECTSI1.440e-10283.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JPP9_9PHAE8.020e-544.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12834contigEcto-sp13_S_contig12834:2..4754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score321.2
Seed ortholog evalue5.7e-85
Seed eggNOG ortholog2880.D7G2R0
Model size1032
Hectar predicted targeting categorychloroplast
Exons4
EggNOG OGs2D5RA@1,2SZDG@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_003160.1
Cds size1032
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462686.915206-CDS-Ecto-sp13_S_contig12834:1..7791681462686.915206-CDS-Ecto-sp13_S_contig12834:1..779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12834 2..779 -
1681462686.926813-CDS-Ecto-sp13_S_contig12834:1587..17001681462686.926813-CDS-Ecto-sp13_S_contig12834:1587..1700Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12834 1588..1700 -
1681462686.9365902-CDS-Ecto-sp13_S_contig12834:4259..43311681462686.9365902-CDS-Ecto-sp13_S_contig12834:4259..4331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12834 4260..4331 -
1681462686.9532897-CDS-Ecto-sp13_S_contig12834:4685..47541681462686.9532897-CDS-Ecto-sp13_S_contig12834:4685..4754Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12834 4686..4754 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12834.2339.1prot_Ecto-sp13_S_contig12834.2339.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12834 2..4754 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12834.2339.1

>prot_Ecto-sp13_S_contig12834.2339.1 ID=prot_Ecto-sp13_S_contig12834.2339.1|Name=mRNA_Ecto-sp13_S_contig12834.2339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=344bp
MTMSGRTRSCLSAVIMLLAAAMQTEAFVAGPVIAGRRTMVSMSSLKEEAQ
PARSSRWGASSSRPIGDGFELSVAEKSFTEMLREKKAKGSFFAPSSEAAA
NADEVAASAAAEAVEAANAAAAEAEASHQANLERQKLAFDDEAKPFIAPG
SVSTPSVSTPSVSTPGSVTPPGGVSNPAAVSTPRVTDPASVGRPSAPAAP
PAAPVSSPAAPRVTDPASIGRPAPPAPPAAAAAPVSSPAAPKVTDPATLA
AKAAAPVAPPAAPASRPAAAAPAAGAGKKWEPRPDWKSSAGSAAPSRPAV
SSPSRPAVSSPAAAAAVSRPSSGGPAKATFNPKADAPWKASGGG
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mRNA from alignment at Ecto-sp13_S_contig12834:2..4754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12834.2339.1 ID=mRNA_Ecto-sp13_S_contig12834.2339.1|Name=mRNA_Ecto-sp13_S_contig12834.2339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12834:2..4754- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTATGTCTGGGCGAACGAGGAGCTGCCTCTCGGCGGTGATCATGCT
GCTCGCGGCGGCGATGCAGGTGCGCCCCTTTCGGGATATCAGCTCACCTC
CGTTGAATGCGTTGCGTCTCTCTGTCTTCGAGATGAACGTAGATAGCTGG
GGCAGGGGCGACAGGAAGATGTAAGAGAGGATCAAAGATGGATACCGCCC
CCAGCGCGGGACCCATGCTGCCACTCCCCCGTGCAACAAGCATATGTTTA
CATGCGGTGGTCAAGACGTCCTTGCTCGGCATGGCTTTCATCTGCTCTTG
ACGTTTTCTCTTCCTCGACGTTTACCATGCGTCACCCGGCGCAATCGCAC
GGGACTCATGATGCCCTCCCTCACCCACACCTTGTCCTGTCTTGTTTGCC
CTCCTGCGTTGGTGCGTGGACAGACGGAAGCGTTCGTGGCGGGCCCAGTG
ATTGCAGGGAGGAGGACCATGGTATCAATGTCGAGCTTGAAGGAGGTGAG
TTTTGCGACTTGATGGGAACACAAAGCTCCCGCGCAGTGTACTTTTTTTT
ACGAACGAACGATTCGGCTGCAGCTCCAGCCTGTTGGGCTTCGAGCGTTA
CCTTTGCTCTGCTAGGTACAGCTGTCGAGGGGCGCTTCATGTAGGTCCAC
GGACGCGTGTTGTTTTTTGCCTTTGCTGTGCATTTGTTTATGGCTGCTCT
CGGGACTTACGTCAAGAGAACGCGCATGCTCTGGTGTTACATTTATTCAT
GTCCTCTCTATGCCCACAAGCTGACGTATTTCGTGAAATGGTGTGCGCGT
TCTCTGCACTCATGATACACGCTACGTATGATATCTAACATATACTCCTG
TAAACTGTAAGATTGCTGTCTGTTGCTTTTTGGTACATGTAGGTACGTTG
GTGTCGTTGTACATGCATACGCACATATGTCGTGTACGCGGCCGGCGTTG
ATGTTCAAGTATTCCTTCTCCGTTGTTCTCAAGCTACGGCGTAGGGCCGA
CGTAACACACTTCCGGTGTGCGGGTGGTTCTAGGGTTGGCTCATGAAGCG
CACCCTTACTGTAGATGAATTCACAGAGATTAGGAAACATAAATGCACAC
AAGACTAAGGAGAAGATGACTTCGTGTTTCTGCAACAACCAATGATCCAC
AGGCTTTGCACATGTACAGCAGTAATTGCGCAAGCAGTAGGTGCCATGCG
TGCAGACTCAGCAGGCGCCTAAAAAGCGAGCTGCTTGAAAGCTGTGGCAT
TAATTGATGGCGTCGTTCTCTGCTGGCGAAATGCACCAAACCGACATGCC
TGACAGGTATCAGTCTACTCAGCGGTTGACTTCAGACCTTGGTGGTTAGA
TAATGGAATTCCATTTACACACACGGGGGAGGCAAGAGGGCCCCGTGCGT
ATCATGTCCACCTACGATATCATCCACGTAACCCCCCCGAAGCCCCGTAG
ATCGGTACCCTGCTGAGCACCCCAAACAGCCCCCTTGTTCGGTACGCAAT
CTACGATCTTCGACACCTTCGTCGCGGACGGCCAGGTGAAACGGTAAAGA
AATCAAAACGCCAAAGTTAACAAAAAATTTTAAACCATTTCAATTCATAC
AACTCTGTCGATGTGCACTACGAAATCGCCGGATCTTCCAGTAGGACGTC
CTACAAACCTGTCAAAATCTGTTTATGTCAAATTACTATCCAAAATCTGC
CTAAGAACAAATTACCCTCTTGAGAAAAATGCTCCACACCAAATTCTCAT
GAAGTCATTACACAAGTCAGCACGAGCAATCACCCTTGGAAAAGTAGCCA
CCAACAATGAACATTGCATCAGAATCACCTCGAAAGGGGGACCTCCGGGA
ATACGTGTCGTACCGCCCTGACTACTCACAAGAAGTCCCTCAGATAAAAA
CCATGTTTCAATGATGGACCCATTCAAAGAACCTCCGGAAACACAAAGGC
CTCGACATGACTTACGAGACGAGAACATGCCAAACCCTCTCTCCAATACT
CAATACCTTCTGAGCAAATGGACTGGTCGGTCCAACAGCCCCCGTGCTGC
AACATCCATCCCGAACATGGAAACCAGTATAGTTCGTGCTGTGTTGCACA
ACTCCCGGCAGTTTCCGTGTGCGCATGTTTTCCCGTGGTTGCAGAGAGGT
GTCATTCTTCTTCGTCGCCACTGTCAAGTTTCATCCCCCGATCGCGTTCC
CTGAATCCGAGCCAAGCTGCCACCTTTTTCTCTGTACGTAAGTGCAGGCA
ACGCACCTTCTGCAACGTTGCCGGCCGGCGCTCCCACCACCCAACGAAGC
GAGAAAAACACCTTGCCGAATACAAACCCTCTCGATGCCGGTTCATGCAG
CGGTGGTTTCTGGTCTTTTCTTGTCCGTTTGAAGTGGGCAACATCCCTGG
TTTAACATCATCCCAGACGGATGCGCAAGTTTCCACTTATTTTTTCCTGC
ATCTATGACTCGCCCACACTCGACCTAGAACCTTGTAGCAGTACTGTTGA
AAATGATCCAGCTACAACGGCAGAAGTGTGTTGTGTCACCCCTTGAGGTA
TGCGTGGTACCTCTGCGGTCGATGGCGGCGGCATTTTTCGTGCTCCAGCG
TCCCACGTCCTGCACGGCAGAAATACTGACTGCGTGGGTGTGACCGCCCA
TTTAAAGTAATAAGAAAAAAATAAGAAAACACCAGCCTCGAACGCTTCGC
CCTCCGGTCTCCTTGTTCCCTTTCGGTTGGTTCAACAGAACGACTTTGTA
CGCACCCGGGTGGCAGGCGGGATCCTGGCACTCTTCCGACCTATCGGCCC
GCTCACGTCGTAGATACGACCTAGGACCCCCCTCTCCCACCTTGAACACT
GTTTCCCAGCCAGGTTGTTGTTGTTGTGTGTCACAAAGTCTCCAGCCTTG
CCCCCCATACTCCGATACATGCACTTGTACGATAGTTGCTGGAGGCGCCT
TGCGCCCAGCCGACCGACGCCTGTTGAAGTTGGACGTCACAATGATTCTT
CTCAAACCCTCTGTCCCTGCCCCGATACGACATGTACTTGCGCGATATTT
GCAGGAGGCGCAGCCGGCGCGGTCTTCTCGGTGGGGGGCGTCCTCCTCTC
GGCCAATCGGCGACGGTTTCGAGCTCAGCGTCGCGGAGAAGTCGTTCACG
GAAATGCTTAGGGAGAAGTGAGTGGTGTGTGGATGTCGGCGGTCGTTTCC
CATGCCTGTTGGTCTGGGAGAATGCACCCGGTGTGATTGTTGTCTGGTGG
TGTTGACTGAAAATTCTTGTTGGTTGGTAAATGTCTTCAGTTTGTTTTTG
CGTTTGAGGTCTGCTCAGTAACTCCTTACACCCTTAGCGGCCCAACTGAC
ACGGACGCCTTCGATGGTAACAAGTCAACTATCCACAAGAAGGGTGTACA
CCCATACTCCGGAGTGTGTAAAATAAAATGGAAGAGGACCCAGAAAATCA
TCACAGACGCATGTAGAACGAGATCATTTTGCGGGGTGTGCATACGCGTG
CGTTGGCAGCGAGTTCAAACTACAAGCCGTCCAATTTTTATGACAGACGA
ATGATTTCAACAGATGCTCGTTAGTGGATTGGTCAGTGAGCCACCAAGTG
CAGTTTTTTTTTGTGGTCACTGAAACCGGATCTGGAAAAGTCTCCTTGCC
AAAAGCCGACGTACCGCTGTCCGAATGGGCGGGAACGCATAGGTTTCCCC
CTTCCACACCTGGTGTCCATGTCAGCCCACCCATTTTATGAAGTTCCAAT
ATCCCTTGTTTCCAAGAGTCTAGTCGGCCGCTATGACAGAAAGGCCACCA
CTCTATTGTACTCGTGTATGCTTTGTGTCGTGGGTTACCTTACGTTGCTC
TGAATACTTTTTTTTTTTTTGGGGGGGGGGGTTTGGTCGCGGTACCAGGT
ATTCATTTCTTTCCTTGACCAACCTCTCGTGGCCGCTCGCTGCCCTCGTT
CCGGTTGGTCCGCTCGCACGCCCAGGAAAGCGAAGGGGTCTTTCTTCGCC
CCTTCCTCAGAGGCAGCCGCCAACGCCGACGAGGTCGCCGCCTCCGCCGC
CGCCGAGGCCGTAGAAGCGGCCAACGCTGCCGCAGCCGAGGCCGAAGCCT
CCCACCAAGCCAACCTGGAGAGGCAGAAACTGGCGTTCGACGACGAGGCC
AAGCCCTTTATTGCGCCAGGGAGCGTGTCCACCCCGAGCGTATCCACCCC
CAGCGTTTCCACCCCGGGAAGCGTTACCCCTCCTGGAGGCGTGTCTAACC
CGGCCGCCGTGTCTACCCCCAGGGTGACCGACCCTGCCAGTGTTGGCCGC
CCCAGCGCCCCCGCGGCGCCACCCGCCGCCCCGGTCAGCAGCCCGGCTGC
CCCTAGGGTAACCGACCCGGCCAGCATTGGCCGTCCTGCCCCCCCGGCTC
CCCCCGCTGCTGCTGCCGCCCCTGTCAGCAGCCCGGCTGCCCCCAAGGTG
ACCGACCCCGCTACTCTCGCCGCCAAGGCAGCAGCCCCCGTAGCTCCCCC
CGCCGCCCCCGCCAGCAGGCCGGCCGCTGCTGCCCCCGCAGCCGGCGCCG
GAAAGAAGTGGGAGCCCAGGCCGGACTGGAAGTCTTCCGCTGGTTCCGCC
GCCCCGTCGAGACCGGCTGTTTCTTCTCCGTCGAGGCCGGCTGTGTCGAG
CCCCGCCGCCGCGGCGGCTGTTTCGAGGCCCTCGTCTGGCGGCCCGGCTA
AGGCCACGTTCAACCCGAAGGCGGACGCTCCCTGGAAGGCTTCGGGAGGC
GGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12834:2..4754-

>mRNA_Ecto-sp13_S_contig12834.2339.1 ID=mRNA_Ecto-sp13_S_contig12834.2339.1|Name=mRNA_Ecto-sp13_S_contig12834.2339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1032bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12834:2..4754- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTATGTCTGGGCGAACGAGGAGCTGCCTCTCGGCGGTGATCATGCT
GCTCGCGGCGGCGATGCAGACGGAAGCGTTCGTGGCGGGCCCAGTGATTG
CAGGGAGGAGGACCATGGTATCAATGTCGAGCTTGAAGGAGGAGGCGCAG
CCGGCGCGGTCTTCTCGGTGGGGGGCGTCCTCCTCTCGGCCAATCGGCGA
CGGTTTCGAGCTCAGCGTCGCGGAGAAGTCGTTCACGGAAATGCTTAGGG
AGAAGAAAGCGAAGGGGTCTTTCTTCGCCCCTTCCTCAGAGGCAGCCGCC
AACGCCGACGAGGTCGCCGCCTCCGCCGCCGCCGAGGCCGTAGAAGCGGC
CAACGCTGCCGCAGCCGAGGCCGAAGCCTCCCACCAAGCCAACCTGGAGA
GGCAGAAACTGGCGTTCGACGACGAGGCCAAGCCCTTTATTGCGCCAGGG
AGCGTGTCCACCCCGAGCGTATCCACCCCCAGCGTTTCCACCCCGGGAAG
CGTTACCCCTCCTGGAGGCGTGTCTAACCCGGCCGCCGTGTCTACCCCCA
GGGTGACCGACCCTGCCAGTGTTGGCCGCCCCAGCGCCCCCGCGGCGCCA
CCCGCCGCCCCGGTCAGCAGCCCGGCTGCCCCTAGGGTAACCGACCCGGC
CAGCATTGGCCGTCCTGCCCCCCCGGCTCCCCCCGCTGCTGCTGCCGCCC
CTGTCAGCAGCCCGGCTGCCCCCAAGGTGACCGACCCCGCTACTCTCGCC
GCCAAGGCAGCAGCCCCCGTAGCTCCCCCCGCCGCCCCCGCCAGCAGGCC
GGCCGCTGCTGCCCCCGCAGCCGGCGCCGGAAAGAAGTGGGAGCCCAGGC
CGGACTGGAAGTCTTCCGCTGGTTCCGCCGCCCCGTCGAGACCGGCTGTT
TCTTCTCCGTCGAGGCCGGCTGTGTCGAGCCCCGCCGCCGCGGCGGCTGT
TTCGAGGCCCTCGTCTGGCGGCCCGGCTAAGGCCACGTTCAACCCGAAGG
CGGACGCTCCCTGGAAGGCTTCGGGAGGCGGG
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