mRNA_Ecto-sp13_S_contig12830.2336.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12830.2336.1 vs. uniprot
Match: D8LTE8_ECTSI (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTE8_ECTSI) HSP 1 Score: 142 bits (358), Expect = 5.520e-43 Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 1
Query: 4 ADVVVEFTKSKKTVNAVVGSPLSQLCAKNGIKVKYSCKQGDCATCSINIDGRNVKACQGRVPASRRIVKIKA 219
A+VVVEFT SKKTVNAVVGSPLSQLCAKNGIKVKYSCKQGDCATCSINIDGRNVKACQGRVPASRRIVKIKA
Sbjct: 2 ANVVVEFTNSKKTVNAVVGSPLSQLCAKNGIKVKYSCKQGDCATCSINIDGRNVKACQGRVPASRRIVKIKA 73
BLAST of mRNA_Ecto-sp13_S_contig12830.2336.1 vs. uniprot
Match: A0A835Z7N4_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7N4_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 6.150e-16 Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 10 VVVEFTKSKKTVNAVVGSPLSQLCAKNGIKVKYSCKQGDCATCSINIDGRNVKACQGRV-PASRRIVKIK 216
+ V FT S K + A G+ LSQ+ AK G+KV+Y+CK G CATC +N+DGR KAC ++ P +RR+VKIK
Sbjct: 48 IEVHFTVSDKKITAEGGTLLSQVAAKAGVKVRYNCKAGTCATCVLNVDGRMQKACVTKLDPFTRRVVKIK 117
BLAST of mRNA_Ecto-sp13_S_contig12830.2336.1 vs. uniprot
Match: A0A7S3PX20_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PX20_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 1.930e-13 Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 22 FTKSKKTVNAVVGSPLSQLCAKNGIKVKYSCKQGDCATCSINIDGRNVKACQGRVPASRRIVKIK 216
+ K +N GSPL CAK G+K KYSCK+GDC +C++++ G +KAC G+VP R+ ++
Sbjct: 40 LARGAKKMNFKPGSPLKNACAKLGVKPKYSCKKGDCGSCTVSVGGSRMKACVGKVPPEPRLKSLQ 104
BLAST of mRNA_Ecto-sp13_S_contig12830.2336.1 vs. uniprot
Match: A0A7S2SLY0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SLY0_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 2.080e-13 Identity = 28/69 (40.58%), Postives = 46/69 (66.67%), Query Frame = 1
Query: 13 VVEFTKSKKTVNAVVGSPLSQLCAKNGIKVKYSCKQGDCATCSINIDGRNVKACQGRVPASRRIVKIKA 219
+ + T + K + GSP+ CAK G+K +YSCK+GDCA+C+I++ G +K C G+VP + R+ ++A
Sbjct: 40 MTKLTYNGKAIEFKEGSPMKSACAKLGMKPRYSCKKGDCASCTISVGGTRIKPCVGKVPPAPRLKSLQA 108
BLAST of mRNA_Ecto-sp13_S_contig12830.2336.1 vs. uniprot
Match: A0A7S0B0B1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B0B1_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.010e-12 Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 37 KTVNAVVGSPLSQLCAKNGIKVKYSCKQGDCATCSINIDGRNVKACQGRVPASRRIVKI 213
K VNAVVG +SQ+ A +K+ YSCK GDC TC + I+GRN KACQ VP + + +
Sbjct: 94 KPVNAVVGQKISQVAASARVKIPYSCKNGDCGTCVVKINGRNQKACQATVPNGKCQISV 152
BLAST of mRNA_Ecto-sp13_S_contig12830.2336.1 vs. uniprot
Match: A0A7S2USA5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USA5_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 6.280e-12 Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 1
Query: 1 QADVVVEFTKSKKTVNAVVGSPLSQLCAKNGIKVKYSCKQGDCATCSINIDGRNVKACQGRVPASRRIVKI 213
+ DV V F + KK V A G P+ ++ + G K+KYSC++G+CA CS+ +DG K C VP ++ V+I
Sbjct: 85 KGDVEVNFVRQKKIVKASAGEPMREVAKRAGAKIKYSCEKGNCAVCSVWMDGCERKVCVATVPKGQKKVEI 155
BLAST of mRNA_Ecto-sp13_S_contig12830.2336.1 vs. uniprot
Match: A0A6S8XS20_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8XS20_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.070e-11 Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query: 37 KTVNAVVGSPLSQLCAKNGIKVKYSCKQGDCATCSINIDGRNVKACQGRVPASRRIVKIK 216
K V+ GSPL AK G+K KYSCK+GDC +C++++ G +KAC G+VP + R+ ++
Sbjct: 53 KKVDFKEGSPLKNAAAKLGVKPKYSCKRGDCGSCTLSVGGTRIKACVGKVPPAPRLKSLQ 112
BLAST of mRNA_Ecto-sp13_S_contig12830.2336.1 vs. uniprot
Match: A0A7S2D671_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D671_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 2.090e-11 Identity = 25/64 (39.06%), Postives = 41/64 (64.06%), Query Frame = 1
Query: 22 FTKSKKTVNAVVGSPLSQLCAKNGIKVKYSCKQGDCATCSINIDGRNVKACQGRVPASRRIVKI 213
+ K ++ GS + C K GIKV +CK+GDC TC++N+ G+N+KAC G+VP + ++ +
Sbjct: 60 LSNGAKKISVPEGSSMMAACKKLGIKVPTNCKKGDCGTCTVNVGGKNIKACVGKVPPAPKLKSV 123
BLAST of mRNA_Ecto-sp13_S_contig12830.2336.1 vs. uniprot
Match: A0A7S2HVR3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HVR3_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 4.020e-11 Identity = 26/60 (43.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query: 37 KTVNAVVGSPLSQLCAKNGIKVKYSCKQGDCATCSINIDGRNVKACQGRVPASRRIVKIK 216
K + GSPL AK G+K KYSC++GDC +C++++ G VKAC G+VP + R+ ++
Sbjct: 50 KKIEFKEGSPLKNAAAKLGVKPKYSCRKGDCGSCTLSVGGTRVKACVGKVPPAPRLKSLQ 109
BLAST of mRNA_Ecto-sp13_S_contig12830.2336.1 vs. uniprot
Match: A0A7R9WSN6_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WSN6_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 5.830e-11 Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 1
Query: 22 FTKSKKTVNAVVGSPLSQLCAKNGIKVKYSCKQGDCATCSINIDGRNVKACQGRVPASRRIVKIK 216
T K N GSPL A G+K KYSC++GDC +C++++ G+ +KAC G+VP R+ ++
Sbjct: 46 LTNGNKKKNFKPGSPLKSAVAALGVKPKYSCRKGDCGSCTVSVGGQRIKACIGKVPDEPRLKSLQ 110 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12830.2336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12830.2336.1 >prot_Ecto-sp13_S_contig12830.2336.1 ID=prot_Ecto-sp13_S_contig12830.2336.1|Name=mRNA_Ecto-sp13_S_contig12830.2336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp QADVVVEFTKSKKTVNAVVGSPLSQLCAKNGIKVKYSCKQGDCATCSINIback to top mRNA from alignment at Ecto-sp13_S_contig12830:3759..4576+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12830.2336.1 ID=mRNA_Ecto-sp13_S_contig12830.2336.1|Name=mRNA_Ecto-sp13_S_contig12830.2336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=818bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12830:3759..4576+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12830:3759..4576+ >mRNA_Ecto-sp13_S_contig12830.2336.1 ID=mRNA_Ecto-sp13_S_contig12830.2336.1|Name=mRNA_Ecto-sp13_S_contig12830.2336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12830:3759..4576+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |