mRNA_Ecto-sp13_S_contig1279.2305.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1279.2305.1
Unique NamemRNA_Ecto-sp13_S_contig1279.2305.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1279.2305.1 vs. uniprot
Match: D7FTX7_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTX7_ECTSI)

HSP 1 Score: 568 bits (1465), Expect = 1.650e-190
Identity = 344/406 (84.73%), Postives = 350/406 (86.21%), Query Frame = 1 
Query:    1 MGAALGGSCGGSTKEVAGSQCDGPPPGEEPPELDAWIDHSTRPGLRSIVTKSYQISSRERWSKFLGAGLLDAASDGNLAGVRQLLAAGAPLQARDLEGHTPLHRASVAGHAGVAEQLLSSGDGRAPPLGGASPSSSRVVPEPPSLKWQASMEGPVLVPSVSLVKRATLDARDHSGSYPIHLAAACGHADVVQVLLQHGADVSGYNGVAQSPLHTAAAGLDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGNAMVVSILVDGGAELEARGNISNXXXXXXXXASLHSESVQRLLQHGADERAVDIDELTPENMVCESMTEEQKAADPTIVPVGEAICRMLADAPQDRLWRRRRLLPLLQWRQPPPAFDTEPGTAATVGAGSSQSIFELVVCEEEGIMRNIVSYL 1218
            MGAALGGSCGG TKEVAGS+CDGPPPGE+PPELDAWIDHST PGLRSIVT++YQISSRERWSKFLGAGLLDAASDGNLAGVRQLLAAGAPL ARDLEGHTPLHRASVAGHAGVAEQLLSSGDGRAPPLGGASPSSS +VPEPPSLKWQASMEGPVLVPSVSLVKR TLDARDHSGS PIHLAAACGHADVVQVLLQHGADVSG NGVAQSPLHTAAAGLDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXX                          XXXXXXXX               ADERAVDID+LTPENMVCE MTEEQKAADPTI PVGE ICRMLADAPQDRLWRRRRLLPLL WRQPPPAFDT PGTA TV AGS QSIFELVVCEEEGIMRNIVSYL
Sbjct:    1 MGAALGGSCGGRTKEVAGSECDGPPPGEQPPELDAWIDHSTWPGLRSIVTEAYQISSRERWSKFLGAGLLDAASDGNLAGVRQLLAAGAPLHARDLEGHTPLHRASVAGHAGVAEQLLSSGDGRAPPLGGASPSSSGMVPEPPSLKWQASMEGPVLVPSVSLVKRTTLDARDHSGSCPIHLAAACGHADVVQVLLQHGADVSGSNGVAQSPLHTAAAGLDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADERAVDIDDLTPENMVCERMTEEQKAADPTIAPVGETICRMLADAPQDRLWRRRRLLPLLHWRQPPPAFDTGPGTAVTVDAGSGQSIFELVVCEEEGIMRNIVSYL 406
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BLAST of mRNA_Ecto-sp13_S_contig1279.2305.1 vs. uniprot
Match: A0A4S3GJR2_9ACTN (Ankyrin repeat domain-containing protein n=5 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A4S3GJR2_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 1.590e-5
Identity = 52/145 (35.86%), Postives = 71/145 (48.97%), Query Frame = 1 
Query:  214 AASDGNLAGVRQLLAAGAPLQARDLEGHTPLHRASVAGHAGVAEQLLSSG---DGRAPPLGGASPSSSRVVPEPPSLKWQASMEGPVLVPSVSLVKRATLDA-RDHSGSYPIHLAAACGHADVVQVLLQHGADVSGYNGVAQSPL 636
            AA D   A V +LLA+G  + A D EG + L  A   GHA V   LL++G   +GRA P    +P +            +A+M G   V    +    +  A R  S   P+ LAA CGH DVV++LL  GAD+   +   +SPL
Sbjct:   14 AAKDNRPAEVARLLASGVGVDAIDREGRSALDLAVQEGHADVVRLLLAAGADPEGRAGPYHELTPMT------------EAAMFGRAAVVEALIDAGVSTGAQRVRSPHVPLVLAATCGHPDVVELLLDRGADIEDRDFKGRSPL 146
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BLAST of mRNA_Ecto-sp13_S_contig1279.2305.1 vs. uniprot
Match: A0A835WT76_9CHLO (HET domain-containing protein n=2 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WT76_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 4.170e-5
Identity = 48/125 (38.40%), Postives = 63/125 (50.40%), Query Frame = 1 
Query:  214 AASDGNLAGVRQLLAAGAPLQARDLEGHTPLHRASVAGHAGVAEQLLSSGDGRAPPLGGASPSSSRVVPEPPSLKWQASMEGPVLVPSVSLVKRATLDARDHSGSYPIHLAAACGHADVVQVLLQ 588
            A +D   A V++LLAAGA ++A D  G TPL  A VAGHA     LL          GGAS  +     E  S    A+  G   V  + +   A   ARD +G  P+ +AA  GH +VVQ+LL+
Sbjct:  576 AVADNKAAEVKELLAAGAFVEALDAAGRTPLLMAVVAGHADTVRVLLD---------GGASRQACMSEEEKDSALHVAAARGDARVAELLVEGGADTAARDAAGCTPLTVAAREGHLEVVQLLLR 691
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1279.2305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTX7_ECTSI1.650e-19084.73Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTX7... [more]
A0A4S3GJR2_9ACTN1.590e-535.86Ankyrin repeat domain-containing protein n=5 Tax=u... [more]
A0A835WT76_9CHLO4.170e-538.40HET domain-containing protein n=2 Tax=Chlamydomona... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1279contigEcto-sp13_S_contig1279:4170..7821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score575.9
Seed ortholog evalue1.5e-161
Seed eggNOG ortholog2880.D7FTX7
Model size3400
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size1221
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462684.0276656-CDS-Ecto-sp13_S_contig1279:4169..42141681462684.0276656-CDS-Ecto-sp13_S_contig1279:4169..4214Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1279 4170..4214 +
1681462684.0393054-CDS-Ecto-sp13_S_contig1279:4466..56421681462684.0393054-CDS-Ecto-sp13_S_contig1279:4466..5642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1279 4467..5642 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462684.0484643-UTR-Ecto-sp13_S_contig1279:5642..78211681462684.0484643-UTR-Ecto-sp13_S_contig1279:5642..7821Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1279 5643..7821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1279.2305.1prot_Ecto-sp13_S_contig1279.2305.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1279 4170..5642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1279.2305.1

>prot_Ecto-sp13_S_contig1279.2305.1 ID=prot_Ecto-sp13_S_contig1279.2305.1|Name=mRNA_Ecto-sp13_S_contig1279.2305.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=407bp
MGAALGGSCGGSTKEVAGSQCDGPPPGEEPPELDAWIDHSTRPGLRSIVT
KSYQISSRERWSKFLGAGLLDAASDGNLAGVRQLLAAGAPLQARDLEGHT
PLHRASVAGHAGVAEQLLSSGDGRAPPLGGASPSSSRVVPEPPSLKWQAS
MEGPVLVPSVSLVKRATLDARDHSGSYPIHLAAACGHADVVQVLLQHGAD
VSGYNGVAQSPLHTAAAGLDSGDCVRLLLDAGGDLKARDSAGRTPLHVAA
SAGNAMVVSILVDGGAELEARGNISNRTPLHEACASLHSESVQRLLQHGA
DERAVDIDELTPENMVCESMTEEQKAADPTIVPVGEAICRMLADAPQDRL
WRRRRLLPLLQWRQPPPAFDTEPGTAATVGAGSSQSIFELVVCEEEGIMR
NIVSYL*
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mRNA from alignment at Ecto-sp13_S_contig1279:4170..7821+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1279.2305.1 ID=mRNA_Ecto-sp13_S_contig1279.2305.1|Name=mRNA_Ecto-sp13_S_contig1279.2305.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3652bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1279:4170..7821+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGCAGCGCTAGGTGGATCATGCGGAGGGAGCACCAAGGAGGTGTG
TGATTAGTCGAGCAGTTATAAATTCCGGTGCGGATGAATCCGCATCTCCG
GTGGCTCAAGCGTACGTACCAGTCGCAAAGGCTTCTTCCATATGGACGCC
ACACAACAGCAGCGGTAGTGTGTATAATGCGTCTCAAGTGTTAGGGCTAA
AAAACGATCAGCTGCAAGGAGCCCAAGTCGCGTAGACTTTCATGACCACC
ACCCCGCCGTTCATGTACGCGACAAATATTCCACTCCGCCGCAGCAGGTT
GCTGGGAGCCAGTGCGACGGGCCTCCTCCAGGCGAAGAACCGCCCGAATT
GGACGCGTGGATCGACCACAGCACCCGGCCGGGCTTACGCTCCATCGTGA
CCAAGTCATACCAAATCTCAAGCCGCGAGCGCTGGTCCAAGTTCCTGGGT
GCGGGTCTACTGGACGCGGCTTCGGACGGCAACCTCGCGGGCGTCAGGCA
ACTCCTGGCCGCCGGGGCCCCCCTTCAGGCGCGTGACCTGGAAGGGCACA
CTCCGCTTCACCGCGCTTCGGTGGCGGGACACGCAGGCGTGGCTGAGCAG
CTCCTCAGCAGCGGCGACGGCAGGGCACCACCCTTGGGTGGGGCAAGCCC
ATCGTCCAGCAGGGTGGTGCCGGAGCCGCCTAGCCTTAAGTGGCAGGCCA
GCATGGAAGGGCCCGTGCTGGTGCCCTCCGTGTCTCTGGTAAAACGGGCA
ACGCTGGACGCTCGCGATCACTCGGGCTCGTACCCAATACACCTGGCCGC
GGCGTGCGGACACGCAGACGTCGTCCAGGTCCTGCTCCAGCATGGCGCCG
ACGTCTCGGGCTATAACGGCGTGGCGCAAAGTCCTCTCCACACAGCGGCG
GCCGGACTGGACTCCGGAGACTGCGTGCGCCTTCTGCTGGACGCGGGAGG
GGACTTGAAGGCGAGAGACAGTGCCGGCAGAACGCCTCTGCACGTCGCTG
CCTCCGCGGGGAACGCGATGGTTGTATCGATCTTGGTGGACGGCGGCGCG
GAACTCGAGGCCAGGGGGAACATCAGCAACCGCACGCCTCTGCACGAGGC
TTGCGCGAGCCTGCACTCAGAAAGCGTTCAGCGGTTGCTGCAGCACGGAG
CGGACGAGCGCGCGGTAGACATCGATGAACTCACGCCGGAGAACATGGTT
TGCGAGAGCATGACCGAGGAGCAGAAGGCGGCAGATCCTACAATCGTTCC
AGTTGGAGAAGCCATTTGCCGCATGTTGGCCGATGCACCCCAAGACAGAC
TGTGGCGGCGTCGGCGACTGCTGCCTTTGCTGCAGTGGCGCCAGCCACCG
CCCGCTTTCGACACGGAACCGGGTACTGCCGCTACTGTTGGTGCCGGCTC
GAGTCAGTCTATCTTCGAGCTTGTGGTGTGCGAGGAAGAGGGCATCATGC
GCAACATCGTGTCCTATTTGTGACCCGCGGCCTGGGAGGTGAGCGAGCGG
TGGGTTGCGTTCCTAAAGGCTTGGGAGTGCCGAAACGCACGATGACCACT
AGACAGGTAGTCAACTGGTAACCGTTCTTCTCATTGGGGAGCACTACGTT
GGCAGTGGAGAAGGGGCTCCATTCGAGGCGCCAGCTGCCGAGCGTTCTTC
GTGGTTTCCTCCTTCCTCGCTTATACTGATATGCAGTGGCTAGCCTTGTT
GTTGTGTGTTATTGCAGATATGTGCCCGGCTTGATCGTTTCCGGGCTATA
GCAGCAGTCGTCTTGGTCGGGGACAATGAAGTCATATAGACGGTGTTTTC
AGCCATCTCATGAGGAAAATAGGCACCGTCGGTAAGTGCTGCTGCCTGCT
TTTTCTCTTCGCGTCCACTCGGGCGAGGAAATGCTGCATCGCTCCAGCTG
CAGAAAAGCTGGGGAAGGCGGTGGACGTCGAGCACAATATATTACCGATA
CTCGTAATGCATATACCGTTGTTGGTCCATGCTCCGTGGAGATGACCTTT
GACAAGTGTCGATGTCCTTAACGTCGATCGAGGACGAAGACGAGTCTGAT
TCTGGTGGCCGGAGAACCGTTTTCGATTTCGCCTCTCACCCTGAGAGTGG
TGGGGGACCCAAAAACACGCTCAGGAGATTGTGAAGGAATCGCATCAACT
CGCGCCCAGCCGTTCGGGTTCCGGTTGCCCCTACAGGTATTCCTGTATAC
CGCACGAGAAAAAGAGAAAGAGGGTGACGAAGAGGAGATGACATTAAAAA
CGGTCGAAACCCCCAACGTCCGCCGCCGACGAATACTTGTTTACACATGA
CTCCCCTTTAGAGACGTTGTCTTGTACCGCGGTCCTTGATGTGCTCGAGC
GTTTGTTGGTCCTGCCCGTAAGAACAATTGCGCTTGTTTGCCAGCTTGCT
GAGAGTTTGGCAGGGACCAAGAAACACCCAAGGCACCTGGAAAACTCGAC
CTTATGGGTGGTCGAAAGAAAGCGAAACACTTCACTCCGGCATGACAGCT
GGAAAGCAATCTCGTGTTGACATGTTTTTCGCCGCCCTGTGGTGTCCCGT
ACCCTCCACATGCTTTGACCAACAGGGGTGCCGCCTCGAGCGTCGATCGC
ACAAGTTTCCCGAGTTTGCGACCACCGAGGGGAGGGATACGATTTCAAAC
GTCTCGTGGCGTAGGCACTGTCGGGAGAAGCAGCGTGCCCATCCTGGCCG
GGGTCCAACTCTGGTGCCCCGTGCATTCTCTCTGTAAATGTACGCTTTGT
GTTGTTGGTGTCAGCAACAGCGGTACAACTAGTGGCGTGCTGCGTACCCA
CGGAGCAGCTGTGTGCATGTGTCCCTCCTGTATATACATGTAGGGGTTGT
ATCGTGGATGTGGGGAATGACGTCAACGTTTTGAAGGATAGGGTACATAG
GCATTCAACCTACAGAGTGGAACCGGCTCCTGCGCAAACACCGACTGGCG
CACCGAAGGCACACAGCGAACGCAAATCGAAACCTCTTGCTCTTATCTGG
AGTAGTAGGAATGGCGACGGCTTCCGCAATGCAATATTTCTTCGAACTTT
ACAACCTACTGGTATCATTTTTGCCGAGGCTTCCTTGAGATCATGGGACG
AATGACCTTTACATCGGTTTAGTGTAGGGGTCTAACCGAGGTCACAAATG
GTGCACAGTTCTTGGGTTATGAAGTCTTCTAGGCTATATCAATTTCTTTA
CTGCCAAGTTTGCAAGTGCGGGCGGTAAGCTGTGTGTCCGCCCGTAGGGA
CGGAACCTTACGGGGGCTTAAATAGGCTGTTCTATGAGATTAGTTTTTAA
ATCTCGAAATGTATGTGTGCGGTTTTGAACTCTCAAGTTCTTGATGGGGT
GTGTGCCGCAGAAGTGCAGAAAGGGGGTAGTTATAAAAGCTCGGATGCAG
CAGGCAAAAATTCTCGGGGCAGACCGATGTTCGCCGTCATCAATGTACCC
GACGAGGCGATTCACGGCCGTTGACTAGGCGGACGGCGTCCTTCCACCTT
CGGGCTGGAGAAGCGAAGGAGTACCTATTTCTCCCTCGAAGGGGGGTGAT
ACAAGAAACTGAATTTTGGGTAGGACGATACAAATTTCCCATCCCCCAGT
ACGTTAAAACGAGGAAATAGAAAAACCACGACCGACCACCCTGTCCATGT
GC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1279:4170..7821+

>mRNA_Ecto-sp13_S_contig1279.2305.1 ID=mRNA_Ecto-sp13_S_contig1279.2305.1|Name=mRNA_Ecto-sp13_S_contig1279.2305.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1221bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1279:4170..7821+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGCAGCGCTAGGTGGATCATGCGGAGGGAGCACCAAGGAGGTTGC
TGGGAGCCAGTGCGACGGGCCTCCTCCAGGCGAAGAACCGCCCGAATTGG
ACGCGTGGATCGACCACAGCACCCGGCCGGGCTTACGCTCCATCGTGACC
AAGTCATACCAAATCTCAAGCCGCGAGCGCTGGTCCAAGTTCCTGGGTGC
GGGTCTACTGGACGCGGCTTCGGACGGCAACCTCGCGGGCGTCAGGCAAC
TCCTGGCCGCCGGGGCCCCCCTTCAGGCGCGTGACCTGGAAGGGCACACT
CCGCTTCACCGCGCTTCGGTGGCGGGACACGCAGGCGTGGCTGAGCAGCT
CCTCAGCAGCGGCGACGGCAGGGCACCACCCTTGGGTGGGGCAAGCCCAT
CGTCCAGCAGGGTGGTGCCGGAGCCGCCTAGCCTTAAGTGGCAGGCCAGC
ATGGAAGGGCCCGTGCTGGTGCCCTCCGTGTCTCTGGTAAAACGGGCAAC
GCTGGACGCTCGCGATCACTCGGGCTCGTACCCAATACACCTGGCCGCGG
CGTGCGGACACGCAGACGTCGTCCAGGTCCTGCTCCAGCATGGCGCCGAC
GTCTCGGGCTATAACGGCGTGGCGCAAAGTCCTCTCCACACAGCGGCGGC
CGGACTGGACTCCGGAGACTGCGTGCGCCTTCTGCTGGACGCGGGAGGGG
ACTTGAAGGCGAGAGACAGTGCCGGCAGAACGCCTCTGCACGTCGCTGCC
TCCGCGGGGAACGCGATGGTTGTATCGATCTTGGTGGACGGCGGCGCGGA
ACTCGAGGCCAGGGGGAACATCAGCAACCGCACGCCTCTGCACGAGGCTT
GCGCGAGCCTGCACTCAGAAAGCGTTCAGCGGTTGCTGCAGCACGGAGCG
GACGAGCGCGCGGTAGACATCGATGAACTCACGCCGGAGAACATGGTTTG
CGAGAGCATGACCGAGGAGCAGAAGGCGGCAGATCCTACAATCGTTCCAG
TTGGAGAAGCCATTTGCCGCATGTTGGCCGATGCACCCCAAGACAGACTG
TGGCGGCGTCGGCGACTGCTGCCTTTGCTGCAGTGGCGCCAGCCACCGCC
CGCTTTCGACACGGAACCGGGTACTGCCGCTACTGTTGGTGCCGGCTCGA
GTCAGTCTATCTTCGAGCTTGTGGTGTGCGAGGAAGAGGGCATCATGCGC
AACATCGTGTCCTATTTGTGA
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