mRNA_Ecto-sp13_S_contig1279.2304.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1279.2304.1
Unique NamemRNA_Ecto-sp13_S_contig1279.2304.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1279.2304.1 vs. uniprot
Match: D7FTX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTX6_ECTSI)

HSP 1 Score: 455 bits (1171), Expect = 3.610e-157
Identity = 227/241 (94.19%), Postives = 231/241 (95.85%), Query Frame = 1
Query:    1 GVLIPRSMPQLSALPALASVEPSSYWLTRSLFLRCLGGVFAVAFSVALRQNPALIGDHGVTPAKDYLKRVLRNGFRGDLRAAAKRLPTLFWLLPPEAALDPWLKRTAALGLSLSILVTLLGAANLPIILALWVLYHTLANVGQHWQVYGFGWENQLLETAFLTAFAVPLLSLQPFPAACPPPAVIPWLYKWLAFRVMFGA--AGAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQ 717
            GVLIPRSMPQLSALPALAS EPSSYWLTRSLFLRCLGGVF+VAFSVALRQNPALIGDHGVTPAKDYLKRVLRNGF+GDLRAAAKRLPTLFWLLPPEAALDPWLKRTA +GLSLSILVTLLGAANLPIILALWVLYHTLANVGQHW  YGFGWENQLLETAFLTAFAVPLLSLQPFPA CPPPAVIPWLYKWLAFR+MFGA    AGLIKIRGDKVWKDLTA DYHYETQPLPNPISYFLHQ
Sbjct:    3 GVLIPRSMPQLSALPALASAEPSSYWLTRSLFLRCLGGVFSVAFSVALRQNPALIGDHGVTPAKDYLKRVLRNGFKGDLRAAAKRLPTLFWLLPPEAALDPWLKRTAVIGLSLSILVTLLGAANLPIILALWVLYHTLANVGQHW--YGFGWENQLLETAFLTAFAVPLLSLQPFPATCPPPAVIPWLYKWLAFRIMFGAFERRAGLIKIRGDKVWKDLTAMDYHYETQPLPNPISYFLHQ 241          
BLAST of mRNA_Ecto-sp13_S_contig1279.2304.1 vs. uniprot
Match: A0A5B7DZE5_PORTR (Lipase maturation factor n=4 Tax=Portunidae TaxID=6757 RepID=A0A5B7DZE5_PORTR)

HSP 1 Score: 237 bits (604), Expect = 1.960e-70
Identity = 122/224 (54.46%), Postives = 156/224 (69.64%), Query Frame = 1
Query:   52 ASVEPSSYWLTRSLFLRCLGGVFAVAFSVALRQNPALIGDHGVTPAKDYLKRVLRNGFRGDLRAAAKRLPTLFWLLPP--EAALDPWLKRTAALGLSLSILVTLLGAANLPIILALWVLYHTLANVGQHWQVYGFGWENQLLETAFLTAFAVPLLSLQPFPAACPPPAVIPWLYKWLAFRVMFGAAGAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQ 717
            A++ P SYWLTR ++LR L  ++AVAF VAL QN  LIGD+G+ P K+Y++ V +     D     K  PTL WL  P   A++DPWL   A  GL+L+ +V LLGAAN+ I+LALW+LYH+L  VGQ W  YGFGWE+QLLET  L  + VPLLSL+  P + PPP V+ W  +WL FR+M GA   GLIK+RGD  W DLT  +YHY+TQP+PNP+SY+LHQ
Sbjct:  136 ATLLPDSYWLTRIVYLRFLAFIYAVAFLVALHQNKQLIGDNGLLPVKNYMQLVAKRA-GSDWWERIKAAPTLLWLAEPWTTASVDPWLDLIAGAGLTLACVVLLLGAANVFIMLALWILYHSLVAVGQQW--YGFGWESQLLETGLLGVWGVPLLSLRRLPTSSPPPLVLVWGLRWLIFRIMMGA---GLIKVRGDPCWMDLTCMNYHYQTQPVPNPMSYYLHQ 353          
BLAST of mRNA_Ecto-sp13_S_contig1279.2304.1 vs. uniprot
Match: A0A6P5A459_BRABE (Lipase maturation factor n=5 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5A459_BRABE)

HSP 1 Score: 228 bits (582), Expect = 5.680e-68
Identity = 113/220 (51.36%), Postives = 149/220 (67.73%), Query Frame = 1
Query:   58 VEPSSYWLTRSLFLRCLGGVFAVAFSVALRQNPALIGDHGVTPAKDYLKRVLRNGFRGDLRAAAKRLPTLFWLLPPEAALDPWLKRTAALGLSLSILVTLLGAANLPIILALWVLYHTLANVGQHWQVYGFGWENQLLETAFLTAFAVPLLSLQPFPAACPPPAVIPWLYKWLAFRVMFGAAGAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQ 717
            +E  +YWLTR +FLR LG ++ VAF VAL QN  L+G  G+ PA  YL+RV ++      ++    +P+L W +  E  LD WL R A LG +LS +V + G AN+ ++ ALW LYH++ N+GQ W  Y FGWE+QLLET FL  F  PLL+L P P   PP  V+ W Y+WL FR+M GA   GLIKIRGD+ W+DLT  +YHY+TQP+PNP+SY+LHQ
Sbjct:   59 LETGTYWLTRIVFLRSLGLIYFVAFLVALHQNKQLLGTDGLLPAHLYLQRVQQHAAADPTQSTWSLVPSLLWWVDWERDLDLWLDRLAYLGAALSFIVMVTGCANMVMMAALWALYHSIVNIGQRW--YSFGWESQLLETGFLAIFFCPLLTLHPLPRRTPPSLVVIWGYRWLIFRIMLGA---GLIKIRGDQCWRDLTCMNYHYQTQPVPNPLSYYLHQ 273          
BLAST of mRNA_Ecto-sp13_S_contig1279.2304.1 vs. uniprot
Match: A0A1S3H7P2_LINUN (Lipase maturation factor n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3H7P2_LINUN)

HSP 1 Score: 224 bits (572), Expect = 1.380e-66
Identity = 117/230 (50.87%), Postives = 152/230 (66.09%), Query Frame = 1
Query:   28 QLSALPALASVEPSSYWLTRSLFLRCLGGVFAVAFSVALRQNPALIGDHGVTPAKDYLKRVLRNGFRGDLRAAAKRLPTLFWLLPPEAALDPWLKRTAALGLSLSILVTLLGAANLPIILALWVLYHTLANVGQHWQVYGFGWENQLLETAFLTAFAVPLLSLQPFPAACPPPAVIPWLYKWLAFRVMFGAAGAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQ 717
            +LS +     +E  SYWLTR  FLR LG ++AVAF V   QN  LIG  G+ PA ++LK++  +   G L  +    PTL W +  E  +D +L   +  GL LS+L+ +LG+AN+ ++  LWVLYH+L NVGQ W  Y FGWE+QLLE+ FL  F  PLLSL+P P   PP   + W Y+WL FR+M GA   GLIKIRGD+ W+DLT  +YHYETQP+PNPISY+LHQ
Sbjct:   35 ELSDMKITLQLEAGSYWLTRIFFLRFLGFIYAVAFLVGYHQNIQLIGQKGLLPAANHLKKIWSHT-GGSLFQSLNYAPTLLWFVNYEDHMDLYLTAISLCGLMLSLLLVVLGSANMLMMSVLWVLYHSLVNVGQRW--YSFGWESQLLESGFLAIFFCPLLSLRPVPRKTPPSWAVIWGYRWLIFRIMLGA---GLIKIRGDQCWRDLTCMNYHYETQPVPNPISYYLHQ 258          
BLAST of mRNA_Ecto-sp13_S_contig1279.2304.1 vs. uniprot
Match: UPI0014038EC0 (lipase maturation factor 1 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014038EC0)

HSP 1 Score: 224 bits (571), Expect = 1.860e-66
Identity = 119/223 (53.36%), Postives = 149/223 (66.82%), Query Frame = 1
Query:   58 VEPSSYWLTRSLFLRCLGGVFAVAFSVALRQNPALIGDHGVTPAKDYLKRVLR--NGFRGDLRAAAKRLPTLFWLLPPEAALDPW-LKRTAALGLSLSILVTLLGAANLPIILALWVLYHTLANVGQHWQVYGFGWENQLLETAFLTAFAVPLLSLQPFPAACPPPAVIPWLYKWLAFRVMFGAAGAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQ 717
            + P S W TR L LR L  ++ VAFSVAL QN ALIGD+G+ PA  YL+R+LR   G    L+A A R PTL WL   E +   W L   A  GL+L+  V L G AN+ ++ ALW+LYH+L  VGQ W  Y FGWE+QLLET FL  F  PLLSL+ +P   PP  ++ W + WL FR+M GA   GLIKIRGDK W+DLT  DYHYETQP+PNP++Y++H+
Sbjct:   45 LRPGSLWATRELLLRALALIYVVAFSVALHQNRALIGDNGLLPASLYLRRMLRYVGGGPVGLQAVA-RAPTLLWLALDEVSSLDWALDAVACAGLALAAFVALTGRANMIVMAALWMLYHSLVAVGQIW--YSFGWESQLLETGFLAIFLCPLLSLKQYPRGSPPSRIVIWAFLWLIFRIMLGA---GLIKIRGDKCWRDLTCMDYHYETQPVPNPVAYYMHR 261          
BLAST of mRNA_Ecto-sp13_S_contig1279.2304.1 vs. uniprot
Match: UPI0018D7266A (lipase maturation factor 1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D7266A)

HSP 1 Score: 225 bits (573), Expect = 3.090e-66
Identity = 115/221 (52.04%), Postives = 151/221 (68.33%), Query Frame = 1
Query:   58 VEPSSYWLTRSLFLRCLGGVFAVAFSVALRQNPALIGDHGVTPAKDYLKRVLRNGFRGDLRAAAKRL-PTLFWLLPPEAALDPWLKRTAALGLSLSILVTLLGAANLPIILALWVLYHTLANVGQHWQVYGFGWENQLLETAFLTAFAVPLLSLQPFPAACPPPAVIPWLYKWLAFRVMFGAAGAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQ 717
            +EP+SYWLTR +FLR L  ++  AF VAL QN  L+G  G+ P + YL R+ +N   G++   A    PT+ W +  E A+D WL   A  G++LS  V +LG+AN+ +++ LW+LYH+L +VGQ W  Y FGWE+QLLET FL  F  PLLSL+ +P   P P V  W Y+WL FR+M GA   GLIKIRGD+ W+DLT  +YHYETQP+PNPISY+LHQ
Sbjct:   91 LEPNSYWLTRIVFLRSLAFIYLTAFLVALHQNKQLMGRDGLLPTRLYLDRI-KNYVGGEVNVQALSFAPTILWFVDVEGAVDYWLDALAYAGVALSGFVLVLGSANMVVMVMLWLLYHSLVSVGQRW--YSFGWESQLLETGFLAIFMCPLLSLRQYPRRTPTPWVTLWGYRWLIFRIMIGA---GLIKIRGDQCWRDLTCMNYHYETQPVPNPISYYLHQ 305          
BLAST of mRNA_Ecto-sp13_S_contig1279.2304.1 vs. uniprot
Match: A0A8B7YM60_ACAPL (Lipase maturation factor n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YM60_ACAPL)

HSP 1 Score: 223 bits (568), Expect = 7.740e-66
Identity = 116/221 (52.49%), Postives = 145/221 (65.61%), Query Frame = 1
Query:   58 VEPSSYWLTRSLFLRCLGGVFAVAFSVALRQNPALIGDHGVTPAKDYLKRVLRNGFRGDLRAAAKRL-PTLFWLLPPEAALDPWLKRTAALGLSLSILVTLLGAANLPIILALWVLYHTLANVGQHWQVYGFGWENQLLETAFLTAFAVPLLSLQPFPAACPPPAVIPWLYKWLAFRVMFGAAGAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQ 717
            +EP SYWLTR +FLR L  V+  AF VAL QN  L G  G+ P + YL R+ +N   G +   A    PT+ W +  E  +D WL   A  G++LS LV LLG+AN+ ++  LW+LYH+L  VGQ W  Y FGWE+QLLET FL  F  PL SL+ FP   P P V  W Y+WL FR+M GA   GLIKIRGD+ W++LT  +YHYETQP+PNPISY+LHQ
Sbjct:   50 LEPHSYWLTRIVFLRSLAFVYLTAFLVALHQNKQLFGQDGLLPTRLYLDRI-KNYVGGTVNTQALSFAPTVLWFVDTEGTVDYWLDVLAYAGIALSALVLLLGSANMVVMATLWLLYHSLVGVGQKW--YSFGWESQLLETGFLAIFMCPLFSLRQFPRRTPTPLVTLWGYRWLIFRIMIGA---GLIKIRGDECWRNLTCMNYHYETQPVPNPISYYLHQ 264          
BLAST of mRNA_Ecto-sp13_S_contig1279.2304.1 vs. uniprot
Match: K1QJR5_CRAGI (Lipase maturation factor n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1QJR5_CRAGI)

HSP 1 Score: 222 bits (565), Expect = 1.180e-65
Identity = 110/221 (49.77%), Postives = 152/221 (68.78%), Query Frame = 1
Query:   55 SVEPSSYWLTRSLFLRCLGGVFAVAFSVALRQNPALIGDHGVTPAKDYLKRVLRNGFRGDLRAAAKRLPTLFWLLPPEAALDPWLKRTAALGLSLSILVTLLGAANLPIILALWVLYHTLANVGQHWQVYGFGWENQLLETAFLTAFAVPLLSLQPFPAACPPPAVIPWLYKWLAFRVMFGAAGAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQ 717
            ++E +++WLTR + LR +G ++ VAF VAL QN  L G HG+ PA+ +LKR+     +G       R+P+L WL+  E +LD +L  TA  GL+LS+ V ++G AN  I+LALW LYH++ NVG  W  YGFGWE+Q+LET FL  F  P+ +++P P   P   ++ W ++WL FR+M GA   GLIKIRGD+ W+DLT  +YHYETQP+PNPISYF+HQ
Sbjct:   39 TLETNTFWLTRIVLLRYIGFIYFVAFLVALHQNKELCGQHGLIPAQKFLKRIQTES-KGSTLELFTRVPSLVWLIDYENSLDSFLDYTAWAGLALSLFVIVVGGANWFIMLALWTLYHSIVNVGSTW--YGFGWESQILETGFLATFLCPVWNVRPVPEDTPTSKIVIWGFRWLIFRIMIGA---GLIKIRGDQCWRDLTCMNYHYETQPVPNPISYFMHQ 253          
BLAST of mRNA_Ecto-sp13_S_contig1279.2304.1 vs. uniprot
Match: UPI001BB26A20 (lipase maturation factor 1-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB26A20)

HSP 1 Score: 220 bits (561), Expect = 9.330e-65
Identity = 119/221 (53.85%), Postives = 146/221 (66.06%), Query Frame = 1
Query:   67 SSYWLTRSLFLRCLGGVFAVAFSVALRQNPALIGDHGVTPAKDYLKRVLRNGFRGDL----RAAAKRLPTLFWLLPPEAALDPWLKRTAALGLSLSILVTLLGAANLPIILALWVLYHTLANVGQHWQVYGFGWENQLLETAFLTAFAVPLLSLQPFPAACPPPAVIPWLYKWLAFRVMFGAAGAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQ 717
            +SYWLTR +FLR L  V+ VAF VAL QN AL+G  G+ P   YL R+ RN  +       R A    PTL W +  +  LD WL   A  GL LS LV +LG +N+ I+++LWVLYH+L N+GQ W  Y FGWE+QLLET FL  F  PLL+L  FP   P P V  W YKWL FR+M GA   GLIKIRGD+ W+DLT  +YHYETQP+PNP+SY++HQ
Sbjct:   54 NSYWLTRIVFLRSLSFVYFVAFLVALHQNRALLGQKGLLPTSLYLDRI-RNYVKAPSGQVNREAVNFAPTLLWFVDLDQHLDWWLDALAYSGLILSGLVLVLGCSNMLIMMSLWVLYHSLVNIGQRW--YSFGWESQLLETGFLAVFMCPLLTLTRFPRHTPTPWVTLWGYKWLIFRIMIGA---GLIKIRGDQCWRDLTCMNYHYETQPVPNPMSYYMHQ 268          
BLAST of mRNA_Ecto-sp13_S_contig1279.2304.1 vs. uniprot
Match: A0A2G8KKP9_STIJA (Lipase maturation factor n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KKP9_STIJA)

HSP 1 Score: 219 bits (557), Expect = 2.800e-64
Identity = 112/221 (50.68%), Postives = 152/221 (68.78%), Query Frame = 1
Query:   58 VEPSSYWLTRSLFLRCLGGVFAVAFSVALRQNPALIGDHGVTPAKDYLKRVLRNGFRGDL-RAAAKRLPTLFWLLPPEAALDPWLKRTAALGLSLSILVTLLGAANLPIILALWVLYHTLANVGQHWQVYGFGWENQLLETAFLTAFAVPLLSLQPFPAACPPPAVIPWLYKWLAFRVMFGAAGAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQ 717
            +E  +YWLTR + LR L  ++ VAF VAL+QN  L+G+HG+ P K +L ++L N   G++ + A    PT+ W +  ++ +D WL R A  GL +S  V + GAAN+P+++ LW+LYH+L +VGQ W  Y FGWE+QLLET FL  F  P+ +++ FP    PP V  W Y+WL FR+M GA   GLIKIRGD+ W+DLT  DYHYETQP+PNPISY+LHQ
Sbjct:   48 IETGTYWLTRIVLLRYLAFIYFVAFLVALQQNKQLLGNHGLLPIKLHLDKIL-NYVGGEVNQKAISFAPTILWFVD-QSEIDLWLDRIAYGGLGVSAFVLISGAANMPLMIILWLLYHSLVSVGQRW--YSFGWESQLLETGFLAIFLCPVWTVRQFPRKTQPPWVAIWGYRWLIFRIMLGA---GLIKIRGDQCWRDLTCMDYHYETQPVPNPISYYLHQ 261          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1279.2304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTX6_ECTSI3.610e-15794.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5B7DZE5_PORTR1.960e-7054.46Lipase maturation factor n=4 Tax=Portunidae TaxID=... [more]
A0A6P5A459_BRABE5.680e-6851.36Lipase maturation factor n=5 Tax=Branchiostoma Tax... [more]
A0A1S3H7P2_LINUN1.380e-6650.87Lipase maturation factor n=2 Tax=Lingula unguis Ta... [more]
UPI0014038EC01.860e-6653.36lipase maturation factor 1 n=1 Tax=Petromyzon mari... [more]
UPI0018D7266A3.090e-6652.04lipase maturation factor 1-like n=1 Tax=Patiria mi... [more]
A0A8B7YM60_ACAPL7.740e-6652.49Lipase maturation factor n=1 Tax=Acanthaster planc... [more]
K1QJR5_CRAGI1.180e-6549.77Lipase maturation factor n=2 Tax=Crassostrea gigas... [more]
UPI001BB26A209.330e-6553.85lipase maturation factor 1-like n=1 Tax=Lytechinus... [more]
A0A2G8KKP9_STIJA2.800e-6450.68Lipase maturation factor n=1 Tax=Stichopus japonic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1279contigEcto-sp13_S_contig1279:3..3207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score444.1
Seed ortholog evalue4e-122
Seed eggNOG ortholog2880.D7FTX6
Model size717
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.protein glycosylation in Golgi
EggNOG OGs28KNS@1,2QT4H@2759
Ec32 ortholog descriptionLipase maturation factor
Ec32 orthologEc-07_002760.1
Cds size696
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1279.2304.1prot_Ecto-sp13_S_contig1279.2304.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1279 3..3186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462683.9300582-CDS-Ecto-sp13_S_contig1279:2..1201681462683.9300582-CDS-Ecto-sp13_S_contig1279:2..120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1279 3..120 -
1681462683.9429967-CDS-Ecto-sp13_S_contig1279:715..8741681462683.9429967-CDS-Ecto-sp13_S_contig1279:715..874Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1279 716..874 -
1681462683.9532437-CDS-Ecto-sp13_S_contig1279:1459..16111681462683.9532437-CDS-Ecto-sp13_S_contig1279:1459..1611Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1279 1460..1611 -
1681462683.9633753-CDS-Ecto-sp13_S_contig1279:2500..26141681462683.9633753-CDS-Ecto-sp13_S_contig1279:2500..2614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1279 2501..2614 -
1681462683.9733653-CDS-Ecto-sp13_S_contig1279:3033..31861681462683.9733653-CDS-Ecto-sp13_S_contig1279:3033..3186Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1279 3034..3186 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462683.982943-UTR-Ecto-sp13_S_contig1279:3186..32071681462683.982943-UTR-Ecto-sp13_S_contig1279:3186..3207Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1279 3187..3207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1279.2304.1

>prot_Ecto-sp13_S_contig1279.2304.1 ID=prot_Ecto-sp13_S_contig1279.2304.1|Name=mRNA_Ecto-sp13_S_contig1279.2304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=232bp
MPQLSALPALASVEPSSYWLTRSLFLRCLGGVFAVAFSVALRQNPALIGD
HGVTPAKDYLKRVLRNGFRGDLRAAAKRLPTLFWLLPPEAALDPWLKRTA
ALGLSLSILVTLLGAANLPIILALWVLYHTLANVGQHWQVYGFGWENQLL
ETAFLTAFAVPLLSLQPFPAACPPPAVIPWLYKWLAFRVMFGAAGAGLIK
IRGDKVWKDLTATDYHYETQPLPNPISYFLHQ
back to top

mRNA from alignment at Ecto-sp13_S_contig1279:3..3207-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1279.2304.1 ID=mRNA_Ecto-sp13_S_contig1279.2304.1|Name=mRNA_Ecto-sp13_S_contig1279.2304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3205bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1279:3..3207- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGTGCTCATCCCTCGGTCAATGCCGCAGCTCTCAGCCCTACCGGCACT GGCGTCGGTAGAACCCTCGTCGTACTGGCTAACCCGCTCGCTCTTCCTGA GGTGCCTCGGAGGCGTTTTTGCGGTGGCGTTTTCGGTCGCTTTGCGGCAG AACCCGGCTCTGATAGGCGACCATGTGAGAGCCGCCGTTCGCTTTCGGCG AGCTGCTTTTCCGTCTCAAACCCATTACTTTTCAGCTCTCTGTCGGTATG CTGCTCTACAATGCATGTCTTTCGCGTCTTGCCGGCTACTCTACGGTGCC GGGCCGGCTTCGTTCGGGCGTTTGTCAGGCCGGCCAGTGTTGGTTTTCTG TGTGCGGCCTGCGCCAGCAGCAAAGCCCCAGAACCTCTTTGCGAGAATCT TGGTGCCAACTTGTAATCATGACGTGGGGTCCTCCGAAGCTTGCTGTTAC GCTGTGTGCTATCTACTTCTTCCTCTGACCGTCGTTATGTCGCCGCGAGC CTCTGTTGATGCCCGAGCGTCCATGCTACGCTTCCCGCAATCCGTGCGGC GGTGTCTGTCATCTTCGAAACGTCCATGAAACCGCCTGCACAGGGAGTGA CGCCCGCGAAGGACTACTTGAAGCGGGTCCTGAGGAACGGTTTTAGGGGC GACCTACGCGCGGCCGCGAAGAGATTACCGACGCTGTTCTGGTTGCTTCC GCCCGAGGTTAGCCCGAACAAACGTCCACCAGACACTCGCGCTTGACATT GCACGCTTCGTACTTCGTACCCCTCGACAACGATCTATTAGCATGAACAG CTCTTCTACGCAACAAAGTAGGCTTGGAAACGCCAGGCGAGTTTCTGCTT GGAAGAGAACGAAGTGACTCCGTTTGACACCACAATCGTTGGCACAGCAG TAGTTTCGGAAAGTTTTGTACAGTGTTGCCTTTGTTGTACGAATGAAGTG AGTGGCGCCGACACAACGACCATTCCAAGTTAGGTATATAGTCGGTTGTC CTGGAATTTCCCGCTTGTGTCCAGCAGAGTATGGGTCAGGTCACTTTCCT TGAAGCGGCTTGGGCCGCGATTGCGATATTCCTTGGTGTGTGGCATGATA CTTTCACATTTCCTAGTAAGTAGACCACCTGCAAGCTGTTCCTTCACCGT AAAAACACACGTAGACCATTTGTGCGACTACTGTCTGTCGTGAACCGTGC CCTCCCTCCACCCCTGCCCCCGTACGTGGCGTCGGAAGTGTAGTCTACGC TCTTGGTTAGAACAGCATCTCTCCAGTCTAAAAGTGTTTGAGCGGTAGGG CTGGAAATACGTGTAAACGCATCATACGGTTCAACACGAAACGAGGATTT ACCCCAATAGATACATAAGCATCTTAAAGCTGCTGTCACCGAGAACATCG ACGCATGCGCAAAAAGCCTGTCTGCATGTGCTTCTTGAATTCGCATCGAT CTCGCCAACTAGCTGACCAATGAAATACTTGACTCAGGACAGCGGAATAA AAAAACGCGTGCAGCAGTGTTTCTAGTCAGCAGGCCCGGCCGACCTGCGT GCATGTGCTTTCGGGATGTTTGCATTTTCCTGCGTTTGGCTCACAGGCTG CTCTCGACCCGTGGCTCAAGCGAACGGCGGCTCTCGGGCTGTCCCTTTCT ATCCTTGTCACGCTGCTGGGTGCTGCCAACCTGCCTATCATCCTCGCGCT TTGGGTGCTGTACCACACGCTGGCCAACGTGGGGCAGCACTGGCAAGTGT GTTCGCAGCTCTCCAGTACGCCCTTTTTTTTGGTGTTGTATGTTGAGCAG GCGTGTCTCTAGGTCTTCCACGGGGACGGCTGACAATGTTGCATTTCCAC CGGACCACGACACTGTTTTCTGCCATGCAGCTCTCCGATCGACCGGCTGC GCAGAGCTGACTTTACTGCGCGCAATCACAGAGTTTATCCCCTCGGCCAA TGCCGCAAGTAGCGATTATTCCACAAGAATTCGCGGCGAATCGTTTGGGA TCAACAGGATTTGCGCAGTTCTTTTCTCTGGGTCTCTCATCCTTGTTTGC CTACGTAAATTCCCCTTTTGCACCTTGCATGGGGATAGACCGTTATTTGG CTTCTTATTTGCACGTGGAAGAGATGTCGATAACCAATCTGTTGCCAACC TTTCAGCTCTCTCCGCACTCCTTGCTGATTTTTCAGCGCGTGGTCGGCAC CTTTAACCCCGAAATGATCGCGCAGGTTGCATTTTTTGGGCCACATGTCG GCGTTTTCCAGCCTTCCCGTCTCACTTGAATCCTTCTTCACCGCACCGCA TCGCCGTTGCACACTTGCCCCCCCCCGCTCCAGGTACGGTTTTGGCTGGG AAAACCAGCTCCTGGAGACGGCGTTCCTCACCGCGTTCGCGGTGCCCCTC CTATCCCTCCAGCCATTTCCGGCGGCCTGCCCGCCTCCCGCTGTCATACC CTGGCTGTACAAATGGCTCGCCTTCCGCGTAATGTTCGGTGCGTTCTAGC GGAGCGAGGGGGGGCTCCCTCAGTAGTACCGGATACCAGCTGTTTTGTTT TTATGAAGGTTGTGGACAAGTTGAGGCATTACGGAGGTCCGCGCCCCACT GCGGTGACTGCTTACCGCGAGTGTGGTCGGTGGAGTCCTCGTTTGACGGT GCAGAGTACGTGCCTGTTTTTTCTTGCGTAGTGCTCGGACAGTTGGCGCA AGCGAGCCGACGCGTGTCCGCTTCTGCCTTTGCGAACAAATGGCCTCGCT ACAGGCGCCGCTCGCAGGCAAGGGGGGGTAGGGTTGGAGGTTGTTTTTGA AAACCATGTGTGTTGCCATTGGGTGCCTCTGGCACGACCGCCTGAGGACA AGCACTATTATAGAGTACGCTGAGGTACTCTTGTACCACGTGGCGGTGTT GAGGGTGCTTTATGTGTGCGCCCCTAGCCACGGTTTGCCAGCTTCTGGGT CAGGCGAATAGATGTTTGGCGTACACACGACTGTTCCAGGCAGTCTCATT GTTTCGTTTGTGTACCGATGTACCCTCGCCGCCCTTATCCCCCCGTTGAT TTTGGCGTATTTGTTGTGTCTATGCTGCTTTGCGGAGAGCAGGGGCGGGT CTGATCAAGATCAGAGGGGACAAGGTTTGGAAGGACCTCACGGCGACGGA CTACCACTACGAGACGCAGCCACTGCCGAACCCGATCTCTTACTTCCTTC ACCAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1279:3..3207-

>mRNA_Ecto-sp13_S_contig1279.2304.1 ID=mRNA_Ecto-sp13_S_contig1279.2304.1|Name=mRNA_Ecto-sp13_S_contig1279.2304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=696bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1279:3..3207- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCAGCTCTCAGCCCTACCGGCACTGGCGTCGGTAGAACCCTCGTC
GTACTGGCTAACCCGCTCGCTCTTCCTGAGGTGCCTCGGAGGCGTTTTTG
CGGTGGCGTTTTCGGTCGCTTTGCGGCAGAACCCGGCTCTGATAGGCGAC
CATGGAGTGACGCCCGCGAAGGACTACTTGAAGCGGGTCCTGAGGAACGG
TTTTAGGGGCGACCTACGCGCGGCCGCGAAGAGATTACCGACGCTGTTCT
GGTTGCTTCCGCCCGAGGCTGCTCTCGACCCGTGGCTCAAGCGAACGGCG
GCTCTCGGGCTGTCCCTTTCTATCCTTGTCACGCTGCTGGGTGCTGCCAA
CCTGCCTATCATCCTCGCGCTTTGGGTGCTGTACCACACGCTGGCCAACG
TGGGGCAGCACTGGCAAGTGTACGGTTTTGGCTGGGAAAACCAGCTCCTG
GAGACGGCGTTCCTCACCGCGTTCGCGGTGCCCCTCCTATCCCTCCAGCC
ATTTCCGGCGGCCTGCCCGCCTCCCGCTGTCATACCCTGGCTGTACAAAT
GGCTCGCCTTCCGCGTAATGTTCGGTGCAGCAGGGGCGGGTCTGATCAAG
ATCAGAGGGGACAAGGTTTGGAAGGACCTCACGGCGACGGACTACCACTA
CGAGACGCAGCCACTGCCGAACCCGATCTCTTACTTCCTTCACCAA
back to top