mRNA_Ecto-sp13_S_contig10208.229.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10208.229.1
Unique NamemRNA_Ecto-sp13_S_contig10208.229.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10208.229.1 vs. uniprot
Match: D8LT37_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT37_ECTSI)

HSP 1 Score: 598 bits (1541), Expect = 5.070e-211
Identity = 318/340 (93.53%), Postives = 326/340 (95.88%), Query Frame = 1 
Query:    1 VSELLRLISEANLDAFSRHSLEDRANAARNLQAAEVRRMLDLKLSHAAAVNGGACKDEGLKTLNEREATAWAAKLRLKAALNMDRHYASLEPGGLPASLRRRNPTSSHPSDFLDDGTPATPQGAMQTFGRACPPEDNETGAIRHWKRGATETEEVLDLRRDVREWQSSCGRRARFSYLCERWVGVASDIEEKQRQKRMIEAAEGEKRMKERHAAKLLRKRQLAELRANAGSRATGEERRKVERDKEAEERKRLEGEELERMSREEGAQLAGGDRYWGLIRELHRLRAIEEERRRAWEVRIRATKEKMVAVRCISELSDFTHATPPIDPELQRQIDRLLEM 1020
            VSELLRLISEANLDAFSRHSLEDRA AA+NLQ  +VRRMLDLKLSH+AAVN GACKDEGLK LNEREATAWAAKL+LKAALNMDRHYASLEPGGLPASLRRRNPTSS PSDFLDDGTPATPQGAMQTFGRACPPEDNE+GAIR WKRGA ETEEVLDLRRDVREWQSSCGRRARFS LCERWVGVASDIEEKQRQKRMIEAAE EKRM+ER AAKLLRKRQLAELRANAGSRATGEERRKVERDKEAEERKRLEGEELERMSREE AQLAGGDRYWGLIREL RLR IEEERRRAWEVRIRATKEKMVAVRCISELSDFTHATPPIDPELQ+QIDRLLE+
Sbjct:  230 VSELLRLISEANLDAFSRHSLEDRAMAAQNLQVVDVRRMLDLKLSHSAAVNSGACKDEGLKRLNEREATAWAAKLKLKAALNMDRHYASLEPGGLPASLRRRNPTSSQPSDFLDDGTPATPQGAMQTFGRACPPEDNESGAIRLWKRGAKETEEVLDLRRDVREWQSSCGRRARFSDLCERWVGVASDIEEKQRQKRMIEAAEREKRMRERQAAKLLRKRQLAELRANAGSRATGEERRKVERDKEAEERKRLEGEELERMSREEAAQLAGGDRYWGLIRELQRLRVIEEERRRAWEVRIRATKEKMVAVRCISELSDFTHATPPIDPELQQQIDRLLEI 569
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10208.229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT37_ECTSI5.070e-21193.53C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10208contigEcto-sp13_S_contig10208:18..3642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1023
Hectar predicted targeting categoryother localisation
Exons7
Cds size1023
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10208.229.1prot_Ecto-sp13_S_contig10208.229.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10208 18..3642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462515.1281955-CDS-Ecto-sp13_S_contig10208:17..1131681462515.1281955-CDS-Ecto-sp13_S_contig10208:17..113Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10208 18..113 +
1681462515.1393592-CDS-Ecto-sp13_S_contig10208:603..7341681462515.1393592-CDS-Ecto-sp13_S_contig10208:603..734Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10208 604..734 +
1681462515.14908-CDS-Ecto-sp13_S_contig10208:929..11441681462515.14908-CDS-Ecto-sp13_S_contig10208:929..1144Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10208 930..1144 +
1681462515.1579926-CDS-Ecto-sp13_S_contig10208:1841..19921681462515.1579926-CDS-Ecto-sp13_S_contig10208:1841..1992Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10208 1842..1992 +
1681462515.1722019-CDS-Ecto-sp13_S_contig10208:2209..24371681462515.1722019-CDS-Ecto-sp13_S_contig10208:2209..2437Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10208 2210..2437 +
1681462515.1829283-CDS-Ecto-sp13_S_contig10208:2921..30321681462515.1829283-CDS-Ecto-sp13_S_contig10208:2921..3032Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10208 2922..3032 +
1681462515.190713-CDS-Ecto-sp13_S_contig10208:3551..36421681462515.190713-CDS-Ecto-sp13_S_contig10208:3551..3642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10208 3552..3642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10208.229.1

>prot_Ecto-sp13_S_contig10208.229.1 ID=prot_Ecto-sp13_S_contig10208.229.1|Name=mRNA_Ecto-sp13_S_contig10208.229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=341bp
VSELLRLISEANLDAFSRHSLEDRANAARNLQAAEVRRMLDLKLSHAAAV
NGGACKDEGLKTLNEREATAWAAKLRLKAALNMDRHYASLEPGGLPASLR
RRNPTSSHPSDFLDDGTPATPQGAMQTFGRACPPEDNETGAIRHWKRGAT
ETEEVLDLRRDVREWQSSCGRRARFSYLCERWVGVASDIEEKQRQKRMIE
AAEGEKRMKERHAAKLLRKRQLAELRANAGSRATGEERRKVERDKEAEER
KRLEGEELERMSREEGAQLAGGDRYWGLIRELHRLRAIEEERRRAWEVRI
RATKEKMVAVRCISELSDFTHATPPIDPELQRQIDRLLEM*
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mRNA from alignment at Ecto-sp13_S_contig10208:18..3642+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10208.229.1 ID=mRNA_Ecto-sp13_S_contig10208.229.1|Name=mRNA_Ecto-sp13_S_contig10208.229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3625bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10208:18..3642+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTCTGAGCTACTTCGTCTCATTTCCGAAGCCAACCTTGACGCCTTTAG
CCGACACTCTCTCGAGGATCGTGCTAATGCCGCCCGAAATCTTCAGGTGC
GACTTAGTAGTAGTTTCTGCCGCTGCTCCGTTTGTTTTTAGGGAGTTTCG
TGCACCTCATCCGTGCAAATTCGATGTTCAGAGTCTGAAGCTGGGACGCC
TGTTTCGACGGAGCATTGGAAAAACTTGGATGCTCCTGGTGAAATGCACG
CCTCCCTTGGCCCTTTTGCGAGAAACAATGTCATCTGGGAAGGTCAAGCC
CATGAAAGTCACCGGTACGACGTGGAAGGACTGAGAGAAACCGATGTTGG
TGCCCCCGTATGGATCAGGAGTGAATCCTCTACAAAATAGGTTTGGAGAG
CGTTTCCGTCCACCTGATGCATTAGATTTTATCCAGAATATTTTCAGCGG
CAATCTCTTCTGGCGCTCTCATGTCCTGCGCACTTTGCGCACAAGACGCG
AAGCACGACAGGTGTGCACGCCAATTTTTCTCAGATCGCTTCCCGTCCTC
GTTGTGCCACGGCTCATGTCTAACCGTATTGTCCAGGCGGCGGAGGTCAG
ACGGATGCTAGATCTGAAGCTATCCCACGCTGCCGCGGTCAATGGTGGAG
CGTGCAAGGACGAAGGATTGAAGACCTTGAACGAGCGGGAGGCTACCGCA
TGGGCAGCGAAACTAAGGTCAGACTCCACTGCTGCGCTTGTCACAGCCTA
CCCGTTTTCCACATCTTCTTCACACATAAGATGTTCTGCAAAATGACGGT
CGGAGTGAATAGTATTCGACCGCATTAGTTCAGATGATAAGTGCGGTTCC
TCCATTAAGTTAATCTTCCGCTTGCGCACGTACCCGTGCTTGCTCGTCGG
GCCCTTGAATAGGTTGAAAGCAGCCTTGAACATGGACAGGCACTACGCCT
CGTTGGAGCCCGGGGGGCTGCCGGCGTCCCTGCGGCGGAGGAACCCAACC
TCGAGCCATCCTTCGGATTTTCTAGACGACGGCACCCCGGCGACGCCCCA
GGGGGCAATGCAGACGTTTGGGCGTGCCTGCCCGCCGGAGGACAATGAGA
CTGGTGCTATCCGACATTGGAAACGAGGTGAGAGCTATGGAACGCTACCA
TTCACATAAATATCATCGCTGACCGTTTCTCGTTTACTCTTGCACCTCGG
GCCAGTGCAGAATCTGAAAGCGACAAGAAATTTAAGAGTTCCCGCTGTCG
TTTGAGTAGCGCATTGTTCCAGTTCTTTGAAACGGAAGTCGAACAGTATT
GTAGGGCGGGCTTGACAAGCGAGAGATATCACGTACCTGCCGTTTTTTGG
TCAGTTTCCGTTTCCCCTTAACGACATTGTGGGTGGGCCAAAATATTGGT
ATCTTGACGCTTTCGCTCAAGAACTATTTCGTATCCCCAGGATCCTCAGG
ATCCTCAGGAACAAGTAAGTATACTAATTTCCTGCCGATGCAATTTAAAC
CTCTGTCTGACTACATTTTCACACAGCAACTTGAGACTCCATTAGTGCTT
CACTCCTACATGCTACGGGGACAAGGAGTATTTGGAGATGTTGGGCGCTC
GGCGTATTGGTGGCCGTGAAGTCGCCGTCGTGCCGCTTGGAGGGCGCTTT
CCCACAATCCCTAGAGAGACCGCTGCTGTACGCGTCTTGATGATCTACAC
GCGAGCAACGCGGTTGTTTCGTCGGCCCAGTACGCCGACCTGATATTTTT
CAACCACACAATCAACCTGACGTCGGTACCCCGATGCATCGACGACGTGC
TGTTTTCGGTCTTGGAACCCAAAGGGGCCACGGAAACCGAGGAAGTACTC
GACTTACGACGAGACGTGCGAGAGTGGCAGTCTTCTTGCGGGAGACGGGC
ACGCTTCTCCTACCTGTGCGAGCGATGGGTCGGTGTAGCCTCTGACATCG
AAGAAAAGCAGAGGCAGAAGCGGATGTGAGTTGAGATATTTGGGGAGAAC
GGTCTTCCATTGGATTGACTTGTGGAAATACTTTGTTTGTACAGTTGGAT
CACACCCGATGACAGCACGCTTCGAAGCTACTGGCAAAGACCCGTCCCCA
ATGAAGATGATCGAACAACCGACTACAGCAGTCGGATACGATATCCATAG
ACCGCACCCGGCACTCACTACACAAAGTGCACATGATACCAGGATTGAAG
CCGCGGAAGGCGAAAAACGCATGAAGGAGCGGCATGCAGCGAAACTGCTG
CGCAAGCGTCAGCTCGCTGAGCTTCGCGCCAACGCTGGCTCCAGGGCAAC
CGGGGAAGAACGGAGGAAGGTCGAGAGGGACAAGGAGGCGGAAGAGAGAA
AGCGGTTGGAAGGGGAGGAGCTGGAGCGTATGAGCCGGGAGGAAGGCGCA
CAGCTCGCGGGGGGAGACAGGTGCGGCTCGAGGTTGACACTGTTTTGCTT
CAAATCCTGTCGTGGCTTTGATTTTGTGTACGGAGTTGCCACCATCCCCG
TGTTACTGTACGCACAACTTTACTTTTCACTTATATCCATGGATTTTGCC
TTCCTGTCGTCGAATGTTGAACGCGATGGTGCCTGAGCTTGGTGGGACAC
ACTGCAAACGTGGGCTCGCTGTGCCCGTCTGCCGATCGTACGAGAAGCAC
ATATAATAGTGGAGTATTGGAGAATGTATCGGATGCTGTCGTCCAAAGGA
CGTCTTGTGTCGCTGACCGGGCGTATTCTAGAGGTCACGAGCTTGAGTTG
TTCGGTCTACTCTCAGTCAAAATCTTGCAAGTTCCAATACTTTCAAAATG
AGAAGTGTCTACCACTACACGAGCGAACGGTCTATAATTGATGACCGCGA
CATGAACGTTTCGGGTGTGTACCTACAACTTTTTGGTGGTGGTGCTCTAC
CCAGATATTGGGGGCTCATTCGCGAGTTGCACCGGCTCCGCGCTATTGAA
GAGGAACGGCGGCGTGCTTGGGAAGTGAGAATCAGAGCAACCAAGGAGAA
GATGGTAGCAGTCCGGTGAGTCAAGTGGGTACTGACTCAAGCCCATACCC
GGGTCCCTGTTCATCTCGCCCCCCGCCAGGTCTAACGTGTTCCAATATCT
TCATTGAGATAGAAACCATGCGTTGTTTCACAATTTTTTTCCCCATTACC
GTGGGATTGAACTTAGACAGGGTCCGAAACGATGTAGTCGTCACTGGGTC
ACATGCTTGCCTTTCTTTCGCCCCCTTCTCCTCCTCCTCATCTCTCTGTC
TTTCCCTTTCTCGTCCGGTTCTCTTTATTCAATCCGTATGGTTAGTCTGG
ATCCCCTTAGCCATATTGTGCGTGGGTCTTTGATGGGAAACGCTCGCCAT
CATTCTGACCGATCGCATGAGCGCCAACTTCCCCAGTTGACCGGCGCATA
CATGGTTTGCTCTTCGAGAGACATACGTCCAAATTCTGGCCTACGTTTCT
TGAAGCGCGGTCATGACAATCTTGTTTACCATCGGGTGAACGGTTCGCGA
CAGCAACTCTTGTGTGTGCTTCTCTTGCCCCCAGGTGCATATCGGAGCTG
AGCGACTTCACCCACGCGACACCGCCGATCGACCCGGAGCTCCAGCGGCA
GATTGACCGGTTGTTGGAGATGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10208:18..3642+

>mRNA_Ecto-sp13_S_contig10208.229.1 ID=mRNA_Ecto-sp13_S_contig10208.229.1|Name=mRNA_Ecto-sp13_S_contig10208.229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1023bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10208:18..3642+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTCTGAGCTACTTCGTCTCATTTCCGAAGCCAACCTTGACGCCTTTAG
CCGACACTCTCTCGAGGATCGTGCTAATGCCGCCCGAAATCTTCAGGCGG
CGGAGGTCAGACGGATGCTAGATCTGAAGCTATCCCACGCTGCCGCGGTC
AATGGTGGAGCGTGCAAGGACGAAGGATTGAAGACCTTGAACGAGCGGGA
GGCTACCGCATGGGCAGCGAAACTAAGGTTGAAAGCAGCCTTGAACATGG
ACAGGCACTACGCCTCGTTGGAGCCCGGGGGGCTGCCGGCGTCCCTGCGG
CGGAGGAACCCAACCTCGAGCCATCCTTCGGATTTTCTAGACGACGGCAC
CCCGGCGACGCCCCAGGGGGCAATGCAGACGTTTGGGCGTGCCTGCCCGC
CGGAGGACAATGAGACTGGTGCTATCCGACATTGGAAACGAGGGGCCACG
GAAACCGAGGAAGTACTCGACTTACGACGAGACGTGCGAGAGTGGCAGTC
TTCTTGCGGGAGACGGGCACGCTTCTCCTACCTGTGCGAGCGATGGGTCG
GTGTAGCCTCTGACATCGAAGAAAAGCAGAGGCAGAAGCGGATGATTGAA
GCCGCGGAAGGCGAAAAACGCATGAAGGAGCGGCATGCAGCGAAACTGCT
GCGCAAGCGTCAGCTCGCTGAGCTTCGCGCCAACGCTGGCTCCAGGGCAA
CCGGGGAAGAACGGAGGAAGGTCGAGAGGGACAAGGAGGCGGAAGAGAGA
AAGCGGTTGGAAGGGGAGGAGCTGGAGCGTATGAGCCGGGAGGAAGGCGC
ACAGCTCGCGGGGGGAGACAGATATTGGGGGCTCATTCGCGAGTTGCACC
GGCTCCGCGCTATTGAAGAGGAACGGCGGCGTGCTTGGGAAGTGAGAATC
AGAGCAACCAAGGAGAAGATGGTAGCAGTCCGGTGCATATCGGAGCTGAG
CGACTTCACCCACGCGACACCGCCGATCGACCCGGAGCTCCAGCGGCAGA
TTGACCGGTTGTTGGAGATGTAG
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