mRNA_Ecto-sp13_S_contig12750.2281.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12750.2281.1
Unique NamemRNA_Ecto-sp13_S_contig12750.2281.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: A0A6H5K3X3_9PHAE (Lactamase_B domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3X3_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 8.980e-48
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1
Query:   10 QIQKSSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
            QIQKSSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP
Sbjct:  750 QIQKSSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 832          
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: A0A7S2EW98_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EW98_TRICV)

HSP 1 Score: 108 bits (269), Expect = 1.610e-28
Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 1
Query:   10 QIQKS-SLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRR-------VEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
            QIQ++ S++P +ITKIF+THAHGDHSFGLPGLLCLMG++F+ A+          V+IYGP GLR +LR AV+++ S+ V PY VHEL D+P
Sbjct:    7 QIQRTGSVRPGKITKIFLTHAHGDHSFGLPGLLCLMGSSFNYAESNENGQQPPVVDIYGPEGLRMWLRVAVRYSVSRIVPPYRVHELMDIP 97          
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: K0TJD6_THAOC (Lactamase_B domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJD6_THAOC)

HSP 1 Score: 112 bits (281), Expect = 3.900e-27
Identity = 54/79 (68.35%), Postives = 66/79 (83.54%), Query Frame = 1
Query:   22 SSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
            SS+KP +I+KIFITH+HGDHSFGLPGLLCLMGT+ DR+D   VEIYGP GLR +LR A++++ S+ V PY VHEL DVP
Sbjct:  418 SSIKPGKISKIFITHSHGDHSFGLPGLLCLMGTDRDRSDPP-VEIYGPEGLRMWLRVAIRYSVSRVVPPYRVHELMDVP 495          
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: A0A6U3WB42_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3WB42_9STRA)

HSP 1 Score: 112 bits (279), Expect = 6.270e-27
Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   22 SSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
            SS+KP +I+KIFITH HGDHSFGLPGLLCLMGT+ DR D   VEIYGP GLR +LR A++++ S+ V PY VHEL DVP
Sbjct:  223 SSIKPGKISKIFITHCHGDHSFGLPGLLCLMGTDRDR-DAPPVEIYGPEGLRMWLRVAIRYSVSRVVPPYRVHELMDVP 300          
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: A0A7S2WH66_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WH66_9STRA)

HSP 1 Score: 111 bits (277), Expect = 9.370e-27
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 1
Query:   10 QIQKS-SLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
            QIQK+ S+KP +I+KIFITHAHGDHSFGLPGLLCLMG + DR D   VEIYGP GLR +LR A++++ S+ V PY VHE+ D+P
Sbjct:  149 QIQKTGSIKPGKISKIFITHAHGDHSFGLPGLLCLMGQDRDR-DAPPVEIYGPEGLRMWLRVAIRYSVSRIVPPYRVHEIMDIP 231          
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: A0A7S2BLW7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BLW7_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.620e-26
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = 1
Query:   13 IQKSSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
            IQ+S+++P RITKIF+THAHGDH+FGL G+LCLMG ++DR  G  VEI+G  G RAYLRA+ ++T S+ + P+ VHEL DVP
Sbjct:   80 IQRSTVRPGRITKIFLTHAHGDHTFGLMGILCLMGQDWDRT-GEPVEIFGLQGTRAYLRASARYTISRVLPPHRVHELHDVP 160          
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: B8CGC5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CGC5_THAPS)

HSP 1 Score: 110 bits (276), Expect = 1.750e-26
Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    1 FARQIQK-SSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
            F   IQ+ SS+KP +++KIFITH HGDHSFGLPGLLCLMGT+ DR D   ++IYGP GLR +LR A++++ S+ V PY VHEL DVP
Sbjct:  269 FKLSIQRTSSIKPGKVSKIFITHCHGDHSFGLPGLLCLMGTDRDR-DAPPIDIYGPEGLRMWLRVAIRYSVSRVVPPYRVHELMDVP 354          
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: A0A7S3L0B8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L0B8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.290e-26
Identity = 54/88 (61.36%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   10 QIQKS-SLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDR-ADGRR---VEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
            Q+Q++ S++P++ITKIF+THAHGDHSFGLPGLLCLMG ++DR ADG     V+IYGP GLR +LR A++++ S+ V PY VHEL D+P
Sbjct:  114 QVQRTASVRPSKITKIFLTHAHGDHSFGLPGLLCLMGQDYDRGADGDVRPVVDIYGPEGLRMWLRVAIRYSVSRIVPPYRVHELMDLP 201          
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: A0A7S4I6E0_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I6E0_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.270e-26
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 1
Query:   25 SLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNF---DRADGRR--------VEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
            S+KP++ITKIFITH+HGDHSFGLPGLLCLMG++F   D ADG R        V+IYGP GLR +LR A++++ S+ V PY VHEL DVP
Sbjct:  251 SVKPSKITKIFITHSHGDHSFGLPGLLCLMGSSFNYADNADGGRLSGGSMPVVDIYGPEGLRMWLRVAIRYSVSRIVPPYRVHELMDVP 339          
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: A0A7S4E198_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4E198_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 1.590e-25
Identity = 48/86 (55.81%), Postives = 69/86 (80.23%), Query Frame = 1
Query:   10 QIQKSS-LKPTRITKIFITHAHGDHSFGLPGLLCLMG--TNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
            QIQKS+ ++ ++++KIFITH HGDH FGL G+LCLMG  TN D+ + + +EIYGP G RAYLR++++ TYS+ V P+VVHE+ ++P
Sbjct:  128 QIQKSTYIRTSKVSKIFITHLHGDHCFGLAGVLCLMGAQTNQDKKNSQVIEIYGPEGTRAYLRSSLRMTYSRVVPPHVVHEIKNIP 213          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3X3_9PHAE8.980e-48100.00Lactamase_B domain-containing protein n=2 Tax=Ecto... [more]
A0A7S2EW98_TRICV1.610e-2858.24Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
K0TJD6_THAOC3.900e-2768.35Lactamase_B domain-containing protein (Fragment) n... [more]
A0A6U3WB42_9STRA6.270e-2768.35Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2WH66_9STRA9.370e-2765.48Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2BLW7_9STRA1.620e-2660.98Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
B8CGC5_THAPS1.750e-2662.07Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S3L0B8_9STRA2.290e-2661.36Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S4I6E0_9STRA3.270e-2661.80Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S4E198_9EUKA1.590e-2555.81Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12750contigEcto-sp13_S_contig12750:4038..4831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score113.6
Seed ortholog evalue4.5e-23
Seed eggNOG ortholog159749.K0TJD6
Model size258
KEGG koko:K00784
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Beta-lactamase superfamily domain
EggNOG OGs2XAT5@2836,COG1234@1,KOG2121@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_004335.1
EC3.1.26.11
Cds size258
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462682.234232-CDS-Ecto-sp13_S_contig12750:4037..41271681462682.234232-CDS-Ecto-sp13_S_contig12750:4037..4127Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12750 4038..4127 -
1681462682.2441807-CDS-Ecto-sp13_S_contig12750:4663..48311681462682.2441807-CDS-Ecto-sp13_S_contig12750:4663..4831Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12750 4664..4831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12750.2281.1prot_Ecto-sp13_S_contig12750.2281.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12750 4038..4831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12750.2281.1

>prot_Ecto-sp13_S_contig12750.2281.1 ID=prot_Ecto-sp13_S_contig12750.2281.1|Name=mRNA_Ecto-sp13_S_contig12750.2281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
FARQIQKSSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRV
EIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP
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mRNA from alignment at Ecto-sp13_S_contig12750:4038..4831-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12750.2281.1 ID=mRNA_Ecto-sp13_S_contig12750.2281.1|Name=mRNA_Ecto-sp13_S_contig12750.2281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=794bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12750:4038..4831- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGCACGGCAGATTCAGAAGAGCAGCCTAAAACCCACGAGGATCACCAA GATCTTCATCACGCACGCCCACGGAGACCATAGCTTTGGCCTTCCCGGCC TGCTGTGCCTCATGGGAACAAATTTCGATCGGGCAGATGGAAGACGGGTT GAAATATATGGCCCGACGGTGAGTGGTCGTTTGGCCATTGACCACGCGTG CTCGAGCGGACGGAGCATTGTTCCCACGGGACCGATTACCGATGAGTTGT CAATCGTTCCTTCCTACTTCGCCGAATGTTTTGGGTGTGCGCTCATTGGC TGGTGAAGTGCCTTCCGATGAGATAGGCACATGGTTGGGTGTTGAGGTGG GTGTGATTGACACGAGAACGTGTGGCGGACTTCGCGGTATCTTCTTTTTC TTGTTGGGGGATATTTTGATTACGTATCCGAACTGTCGGGTTTATGTACC AGAGAGCCACTTGTGCCGGCGGCATTTTTTGTTGCCGCTGACGGAGTCGC ACCCACGGACTTGCTGACGTCCGTACCGATACCATCCCATGACCGAACCA TGAGTCTTGCTTCCCCCCTAGTCTCTCACGCGACTTGCTTGCTCCGGGCT TTCTTTGTGTTCCTGCTGCGCCCATGCCATGCATATACCACGGTGCCACT TTGTTCTTCAACGACGGGGCCCCTCCCCTCTCTCTCCCCCCCCCCTTTCC CCAGGGACTACGCGCGTACCTCCGCGCAGCGGTGCAGTTCACGTACTCGA AGGCCGTCGTTCCCTACGTGGTGCACGAACTGACGGACGTTCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12750:4038..4831-

>mRNA_Ecto-sp13_S_contig12750.2281.1 ID=mRNA_Ecto-sp13_S_contig12750.2281.1|Name=mRNA_Ecto-sp13_S_contig12750.2281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12750:4038..4831- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGCACGGCAGATTCAGAAGAGCAGCCTAAAACCCACGAGGATCACCAA
GATCTTCATCACGCACGCCCACGGAGACCATAGCTTTGGCCTTCCCGGCC
TGCTGTGCCTCATGGGAACAAATTTCGATCGGGCAGATGGAAGACGGGTT
GAAATATATGGCCCGACGGGACTACGCGCGTACCTCCGCGCAGCGGTGCA
GTTCACGTACTCGAAGGCCGTCGTTCCCTACGTGGTGCACGAACTGACGG
ACGTTCCC
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