mRNA_Ecto-sp13_S_contig12750.2281.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: A0A6H5K3X3_9PHAE (Lactamase_B domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3X3_9PHAE) HSP 1 Score: 171 bits (434), Expect = 8.980e-48 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1
Query: 10 QIQKSSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
QIQKSSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP
Sbjct: 750 QIQKSSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 832
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: A0A7S2EW98_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EW98_TRICV) HSP 1 Score: 108 bits (269), Expect = 1.610e-28 Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 1
Query: 10 QIQKS-SLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRR-------VEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
QIQ++ S++P +ITKIF+THAHGDHSFGLPGLLCLMG++F+ A+ V+IYGP GLR +LR AV+++ S+ V PY VHEL D+P
Sbjct: 7 QIQRTGSVRPGKITKIFLTHAHGDHSFGLPGLLCLMGSSFNYAESNENGQQPPVVDIYGPEGLRMWLRVAVRYSVSRIVPPYRVHELMDIP 97
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: K0TJD6_THAOC (Lactamase_B domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJD6_THAOC) HSP 1 Score: 112 bits (281), Expect = 3.900e-27 Identity = 54/79 (68.35%), Postives = 66/79 (83.54%), Query Frame = 1
Query: 22 SSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
SS+KP +I+KIFITH+HGDHSFGLPGLLCLMGT+ DR+D VEIYGP GLR +LR A++++ S+ V PY VHEL DVP
Sbjct: 418 SSIKPGKISKIFITHSHGDHSFGLPGLLCLMGTDRDRSDPP-VEIYGPEGLRMWLRVAIRYSVSRVVPPYRVHELMDVP 495
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: A0A6U3WB42_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3WB42_9STRA) HSP 1 Score: 112 bits (279), Expect = 6.270e-27 Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = 1
Query: 22 SSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
SS+KP +I+KIFITH HGDHSFGLPGLLCLMGT+ DR D VEIYGP GLR +LR A++++ S+ V PY VHEL DVP
Sbjct: 223 SSIKPGKISKIFITHCHGDHSFGLPGLLCLMGTDRDR-DAPPVEIYGPEGLRMWLRVAIRYSVSRVVPPYRVHELMDVP 300
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: A0A7S2WH66_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WH66_9STRA) HSP 1 Score: 111 bits (277), Expect = 9.370e-27 Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 1
Query: 10 QIQKS-SLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
QIQK+ S+KP +I+KIFITHAHGDHSFGLPGLLCLMG + DR D VEIYGP GLR +LR A++++ S+ V PY VHE+ D+P
Sbjct: 149 QIQKTGSIKPGKISKIFITHAHGDHSFGLPGLLCLMGQDRDR-DAPPVEIYGPEGLRMWLRVAIRYSVSRIVPPYRVHEIMDIP 231
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: A0A7S2BLW7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BLW7_9STRA) HSP 1 Score: 105 bits (262), Expect = 1.620e-26 Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = 1
Query: 13 IQKSSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
IQ+S+++P RITKIF+THAHGDH+FGL G+LCLMG ++DR G VEI+G G RAYLRA+ ++T S+ + P+ VHEL DVP
Sbjct: 80 IQRSTVRPGRITKIFLTHAHGDHTFGLMGILCLMGQDWDRT-GEPVEIFGLQGTRAYLRASARYTISRVLPPHRVHELHDVP 160
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: B8CGC5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CGC5_THAPS) HSP 1 Score: 110 bits (276), Expect = 1.750e-26 Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 1
Query: 1 FARQIQK-SSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
F IQ+ SS+KP +++KIFITH HGDHSFGLPGLLCLMGT+ DR D ++IYGP GLR +LR A++++ S+ V PY VHEL DVP
Sbjct: 269 FKLSIQRTSSIKPGKVSKIFITHCHGDHSFGLPGLLCLMGTDRDR-DAPPIDIYGPEGLRMWLRVAIRYSVSRVVPPYRVHELMDVP 354
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: A0A7S3L0B8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L0B8_9STRA) HSP 1 Score: 109 bits (272), Expect = 2.290e-26 Identity = 54/88 (61.36%), Postives = 72/88 (81.82%), Query Frame = 1
Query: 10 QIQKS-SLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDR-ADGRR---VEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
Q+Q++ S++P++ITKIF+THAHGDHSFGLPGLLCLMG ++DR ADG V+IYGP GLR +LR A++++ S+ V PY VHEL D+P
Sbjct: 114 QVQRTASVRPSKITKIFLTHAHGDHSFGLPGLLCLMGQDYDRGADGDVRPVVDIYGPEGLRMWLRVAIRYSVSRIVPPYRVHELMDLP 201
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: A0A7S4I6E0_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I6E0_9STRA) HSP 1 Score: 110 bits (274), Expect = 3.270e-26 Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 1
Query: 25 SLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNF---DRADGRR--------VEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
S+KP++ITKIFITH+HGDHSFGLPGLLCLMG++F D ADG R V+IYGP GLR +LR A++++ S+ V PY VHEL DVP
Sbjct: 251 SVKPSKITKIFITHSHGDHSFGLPGLLCLMGSSFNYADNADGGRLSGGSMPVVDIYGPEGLRMWLRVAIRYSVSRIVPPYRVHELMDVP 339
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Match: A0A7S4E198_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4E198_9EUKA) HSP 1 Score: 103 bits (257), Expect = 1.590e-25 Identity = 48/86 (55.81%), Postives = 69/86 (80.23%), Query Frame = 1
Query: 10 QIQKSS-LKPTRITKIFITHAHGDHSFGLPGLLCLMG--TNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVP 258
QIQKS+ ++ ++++KIFITH HGDH FGL G+LCLMG TN D+ + + +EIYGP G RAYLR++++ TYS+ V P+VVHE+ ++P
Sbjct: 128 QIQKSTYIRTSKVSKIFITHLHGDHCFGLAGVLCLMGAQTNQDKKNSQVIEIYGPEGTRAYLRSSLRMTYSRVVPPHVVHEIKNIP 213 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12750.2281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12750.2281.1 >prot_Ecto-sp13_S_contig12750.2281.1 ID=prot_Ecto-sp13_S_contig12750.2281.1|Name=mRNA_Ecto-sp13_S_contig12750.2281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp FARQIQKSSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVback to top mRNA from alignment at Ecto-sp13_S_contig12750:4038..4831- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12750.2281.1 ID=mRNA_Ecto-sp13_S_contig12750.2281.1|Name=mRNA_Ecto-sp13_S_contig12750.2281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=794bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12750:4038..4831- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12750:4038..4831- >mRNA_Ecto-sp13_S_contig12750.2281.1 ID=mRNA_Ecto-sp13_S_contig12750.2281.1|Name=mRNA_Ecto-sp13_S_contig12750.2281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12750:4038..4831- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |