mRNA_Ecto-sp13_S_contig12748.2277.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: D8LKD0_ECTSI (SsrA-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD0_ECTSI) HSP 1 Score: 219 bits (557), Expect = 1.270e-71 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
Query: 16 LHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 339
LHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR
Sbjct: 2 LHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 109
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A7S4FCI8_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FCI8_CHRCT) HSP 1 Score: 130 bits (327), Expect = 3.230e-36 Identity = 63/113 (55.75%), Postives = 87/113 (76.99%), Query Frame = 1
Query: 1 ARTSTLHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 339
AR TL+R+AR+NYE+LE++ AGI LVG+EVKSCR KIN+ +G+ Q K G+C+L +HIA S F+QH+ R RRLLL+KREI+KL+ V QKG+T+VP+K +F+ +NR
Sbjct: 33 ARDVTLNRQARQNYELLEEYEAGISLVGTEVKSCRAGKINLRDGYCQIKDGECWLRNVHIARHQFSGTFFQHDETRSRRLLLNKREIRKLDAAVQQKGLTIVPVKAYFNCDNR 145
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A7S3EVW1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EVW1_9EUKA) HSP 1 Score: 127 bits (320), Expect = 5.810e-35 Identity = 58/108 (53.70%), Postives = 85/108 (78.70%), Query Frame = 1
Query: 16 LHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 339
++R ARRNYEIL+ F AGI L+G+EVKSCR +++ + +G+ + K G+C+L +HIA+ G + F+QHE RPRRLLLHKREI+KLE + Q+G+T+VPL+ +F++ NR
Sbjct: 50 VNRLARRNYEILDDFEAGISLLGTEVKSCRANQMQLRDGYCRIKDGECWLMNVHIAKHGTTGAFFQHEETRPRRLLLHKREIRKLEKESEQRGLTIVPLRCYFNEQNR 157
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A835YRQ5_9STRA (Small protein B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRQ5_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.430e-34 Identity = 62/106 (58.49%), Postives = 81/106 (76.42%), Query Frame = 1
Query: 19 HRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNN 336
+++A RNYEILE F AGIEL+G+EVKS R + ++DEG+A AK+G+C LHG+HIA SN + QHE +RPRRLLLHKREIK+LED + G T VPL ++F+ N
Sbjct: 26 NKQAYRNYEILETFEAGIELLGTEVKSARGGRCSIDEGYAAAKRGECVLHGVHIAPYATSNAYDQHEAKRPRRLLLHKREIKRLEDMTTRAGYTAVPLTLYFNHKN 131
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A845X7C8_9CYAN (SsrA-binding protein n=1 Tax=Spirulina sp. SIO3F2 TaxID=2607816 RepID=A0A845X7C8_9CYAN) HSP 1 Score: 118 bits (296), Expect = 8.800e-32 Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 1
Query: 4 RTSTLHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFF 324
RT + +RKAR YEILE F AG+ LVG+EVKS R K+NM +GF Q + G+ +LH +HI+ S ++ HEPRR R+LLLHK+EI KL K+ +KG+T+VPLK++F
Sbjct: 10 RTISDNRKARFRYEILETFEAGLVLVGTEVKSIRAGKVNMGDGFGQIRNGEAWLHNVHISPYQASGEYFNHEPRRIRKLLLHKKEITKLIGKLEEKGLTLVPLKMYF 116
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A7S2S2L9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2L9_9STRA) HSP 1 Score: 118 bits (295), Expect = 1.180e-31 Identity = 56/112 (50.00%), Postives = 82/112 (73.21%), Query Frame = 1
Query: 4 RTSTLHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 339
R +++++ARRNYE LE+ AGI LVG+EVK+ R +I+M +GFAQ KKG+C+L +HI S F+QHE RR R+LLLHK +I+K +V K +T+VP+K +F+++NR
Sbjct: 3 RVFSVNKQARRNYEFLEELEAGISLVGTEVKAIRDGRIDMTDGFAQVKKGECWLKNVHIGPDKSSGPFFQHEARRERKLLLHKNQIRKFNQEVRMKQLTIVPVKAYFNEDNR 114
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A7T5E3S4_9CYAN (SsrA-binding protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A7T5E3S4_9CYAN) HSP 1 Score: 117 bits (292), Expect = 3.550e-31 Identity = 57/102 (55.88%), Postives = 78/102 (76.47%), Query Frame = 1
Query: 19 HRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFF 324
+R+AR YEILE + AGIEL+GSEVKS R K+N+ +GFAQ K G+ +L IHI+ ++N+ Y HE +RPRRLL+H+ EI+KL KV QKG+T+VPLK++
Sbjct: 14 NRQARHEYEILETYEAGIELLGSEVKSIRQGKVNLRDGFAQLKDGELWLQNIHISPHTMTNKAYNHEAKRPRRLLMHRDEIRKLIGKVEQKGLTLVPLKMYL 115
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A6H2NLS0_9CYAN (SsrA-binding protein n=1 Tax=Leptolyngbya sp. LCM1.Bin17 TaxID=2480211 RepID=A0A6H2NLS0_9CYAN) HSP 1 Score: 116 bits (291), Expect = 5.030e-31 Identity = 54/102 (52.94%), Postives = 78/102 (76.47%), Query Frame = 1
Query: 19 HRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFF 324
+R+AR YEILE + AGIEL+GSEVKS R K+N+ +G+AQ K G+ +LH +H++ ++N+ Y HE +R R+LLLH+ EI+KL KV QKG+T+VPLK++
Sbjct: 14 NRQARHQYEILETYEAGIELLGSEVKSIRQGKVNLRDGYAQIKNGELWLHNVHVSPHSMTNKVYNHEAKRTRKLLLHRDEIRKLIGKVEQKGLTLVPLKLYL 115
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: K9FEP1_9CYAN (SsrA-binding protein n=8 Tax=Leptolyngbyaceae TaxID=1890438 RepID=K9FEP1_9CYAN) HSP 1 Score: 116 bits (290), Expect = 8.210e-31 Identity = 56/102 (54.90%), Postives = 78/102 (76.47%), Query Frame = 1
Query: 19 HRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFF 324
+R+AR YEIL+ + AGIEL G+EVKS R K+N+ +G+AQ K G+ +L +HI+ ++N+ Y HEPRRPRRLLLHK EI+KL KV +KG+T+VPLK++
Sbjct: 20 NRQARFTYEILDSYEAGIELKGTEVKSIRAGKVNLRDGYAQVKNGEVWLLNVHISPHDMTNQAYNHEPRRPRRLLLHKAEIRKLIGKVEEKGLTLVPLKLYL 121
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A7S2S2R4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2R4_9STRA) HSP 1 Score: 118 bits (295), Expect = 9.410e-31 Identity = 56/112 (50.00%), Postives = 82/112 (73.21%), Query Frame = 1
Query: 4 RTSTLHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 339
R +++++ARRNYE LE+ AGI LVG+EVK+ R +I+M +GFAQ KKG+C+L +HI S F+QHE RR R+LLLHK +I+K +V K +T+VP+K +F+++NR
Sbjct: 81 RVVSVNKQARRNYEFLEELEAGISLVGTEVKAIRDGRIDMTDGFAQVKKGECWLKNVHIGPDKSSGPFFQHEARRERKLLLHKNQIRKFNQEVRMKQLTIVPVKAYFNEDNR 192 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12748.2277.1 >prot_Ecto-sp13_S_contig12748.2277.1 ID=prot_Ecto-sp13_S_contig12748.2277.1|Name=mRNA_Ecto-sp13_S_contig12748.2277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp ARTSTLHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKback to top mRNA from alignment at Ecto-sp13_S_contig12748:534..2169- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12748.2277.1 ID=mRNA_Ecto-sp13_S_contig12748.2277.1|Name=mRNA_Ecto-sp13_S_contig12748.2277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12748:534..2169- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12748:534..2169- >mRNA_Ecto-sp13_S_contig12748.2277.1 ID=mRNA_Ecto-sp13_S_contig12748.2277.1|Name=mRNA_Ecto-sp13_S_contig12748.2277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12748:534..2169- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |