mRNA_Ecto-sp13_S_contig12748.2277.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12748.2277.1
Unique NamemRNA_Ecto-sp13_S_contig12748.2277.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: D8LKD0_ECTSI (SsrA-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD0_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 1.270e-71
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
Query:   16 LHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 339
            LHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR
Sbjct:    2 LHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 109          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A7S4FCI8_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FCI8_CHRCT)

HSP 1 Score: 130 bits (327), Expect = 3.230e-36
Identity = 63/113 (55.75%), Postives = 87/113 (76.99%), Query Frame = 1
Query:    1 ARTSTLHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 339
            AR  TL+R+AR+NYE+LE++ AGI LVG+EVKSCR  KIN+ +G+ Q K G+C+L  +HIA    S  F+QH+  R RRLLL+KREI+KL+  V QKG+T+VP+K +F+ +NR
Sbjct:   33 ARDVTLNRQARQNYELLEEYEAGISLVGTEVKSCRAGKINLRDGYCQIKDGECWLRNVHIARHQFSGTFFQHDETRSRRLLLNKREIRKLDAAVQQKGLTIVPVKAYFNCDNR 145          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A7S3EVW1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EVW1_9EUKA)

HSP 1 Score: 127 bits (320), Expect = 5.810e-35
Identity = 58/108 (53.70%), Postives = 85/108 (78.70%), Query Frame = 1
Query:   16 LHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 339
            ++R ARRNYEIL+ F AGI L+G+EVKSCR +++ + +G+ + K G+C+L  +HIA+ G +  F+QHE  RPRRLLLHKREI+KLE +  Q+G+T+VPL+ +F++ NR
Sbjct:   50 VNRLARRNYEILDDFEAGISLLGTEVKSCRANQMQLRDGYCRIKDGECWLMNVHIAKHGTTGAFFQHEETRPRRLLLHKREIRKLEKESEQRGLTIVPLRCYFNEQNR 157          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A835YRQ5_9STRA (Small protein B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRQ5_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.430e-34
Identity = 62/106 (58.49%), Postives = 81/106 (76.42%), Query Frame = 1
Query:   19 HRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNN 336
            +++A RNYEILE F AGIEL+G+EVKS R  + ++DEG+A AK+G+C LHG+HIA    SN + QHE +RPRRLLLHKREIK+LED   + G T VPL ++F+  N
Sbjct:   26 NKQAYRNYEILETFEAGIELLGTEVKSARGGRCSIDEGYAAAKRGECVLHGVHIAPYATSNAYDQHEAKRPRRLLLHKREIKRLEDMTTRAGYTAVPLTLYFNHKN 131          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A845X7C8_9CYAN (SsrA-binding protein n=1 Tax=Spirulina sp. SIO3F2 TaxID=2607816 RepID=A0A845X7C8_9CYAN)

HSP 1 Score: 118 bits (296), Expect = 8.800e-32
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    4 RTSTLHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFF 324
            RT + +RKAR  YEILE F AG+ LVG+EVKS R  K+NM +GF Q + G+ +LH +HI+    S  ++ HEPRR R+LLLHK+EI KL  K+ +KG+T+VPLK++F
Sbjct:   10 RTISDNRKARFRYEILETFEAGLVLVGTEVKSIRAGKVNMGDGFGQIRNGEAWLHNVHISPYQASGEYFNHEPRRIRKLLLHKKEITKLIGKLEEKGLTLVPLKMYF 116          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A7S2S2L9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2L9_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.180e-31
Identity = 56/112 (50.00%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    4 RTSTLHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 339
            R  +++++ARRNYE LE+  AGI LVG+EVK+ R  +I+M +GFAQ KKG+C+L  +HI     S  F+QHE RR R+LLLHK +I+K   +V  K +T+VP+K +F+++NR
Sbjct:    3 RVFSVNKQARRNYEFLEELEAGISLVGTEVKAIRDGRIDMTDGFAQVKKGECWLKNVHIGPDKSSGPFFQHEARRERKLLLHKNQIRKFNQEVRMKQLTIVPVKAYFNEDNR 114          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A7T5E3S4_9CYAN (SsrA-binding protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A7T5E3S4_9CYAN)

HSP 1 Score: 117 bits (292), Expect = 3.550e-31
Identity = 57/102 (55.88%), Postives = 78/102 (76.47%), Query Frame = 1
Query:   19 HRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFF 324
            +R+AR  YEILE + AGIEL+GSEVKS R  K+N+ +GFAQ K G+ +L  IHI+   ++N+ Y HE +RPRRLL+H+ EI+KL  KV QKG+T+VPLK++ 
Sbjct:   14 NRQARHEYEILETYEAGIELLGSEVKSIRQGKVNLRDGFAQLKDGELWLQNIHISPHTMTNKAYNHEAKRPRRLLMHRDEIRKLIGKVEQKGLTLVPLKMYL 115          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A6H2NLS0_9CYAN (SsrA-binding protein n=1 Tax=Leptolyngbya sp. LCM1.Bin17 TaxID=2480211 RepID=A0A6H2NLS0_9CYAN)

HSP 1 Score: 116 bits (291), Expect = 5.030e-31
Identity = 54/102 (52.94%), Postives = 78/102 (76.47%), Query Frame = 1
Query:   19 HRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFF 324
            +R+AR  YEILE + AGIEL+GSEVKS R  K+N+ +G+AQ K G+ +LH +H++   ++N+ Y HE +R R+LLLH+ EI+KL  KV QKG+T+VPLK++ 
Sbjct:   14 NRQARHQYEILETYEAGIELLGSEVKSIRQGKVNLRDGYAQIKNGELWLHNVHVSPHSMTNKVYNHEAKRTRKLLLHRDEIRKLIGKVEQKGLTLVPLKLYL 115          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: K9FEP1_9CYAN (SsrA-binding protein n=8 Tax=Leptolyngbyaceae TaxID=1890438 RepID=K9FEP1_9CYAN)

HSP 1 Score: 116 bits (290), Expect = 8.210e-31
Identity = 56/102 (54.90%), Postives = 78/102 (76.47%), Query Frame = 1
Query:   19 HRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFF 324
            +R+AR  YEIL+ + AGIEL G+EVKS R  K+N+ +G+AQ K G+ +L  +HI+   ++N+ Y HEPRRPRRLLLHK EI+KL  KV +KG+T+VPLK++ 
Sbjct:   20 NRQARFTYEILDSYEAGIELKGTEVKSIRAGKVNLRDGYAQVKNGEVWLLNVHISPHDMTNQAYNHEPRRPRRLLLHKAEIRKLIGKVEEKGLTLVPLKLYL 121          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A7S2S2R4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2R4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 9.410e-31
Identity = 56/112 (50.00%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    4 RTSTLHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 339
            R  +++++ARRNYE LE+  AGI LVG+EVK+ R  +I+M +GFAQ KKG+C+L  +HI     S  F+QHE RR R+LLLHK +I+K   +V  K +T+VP+K +F+++NR
Sbjct:   81 RVVSVNKQARRNYEFLEELEAGISLVGTEVKAIRDGRIDMTDGFAQVKKGECWLKNVHIGPDKSSGPFFQHEARRERKLLLHKNQIRKFNQEVRMKQLTIVPVKAYFNEDNR 192          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKD0_ECTSI1.270e-71100.00SsrA-binding protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A7S4FCI8_CHRCT3.230e-3655.75Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A7S3EVW1_9EUKA5.810e-3553.70Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A835YRQ5_9STRA1.430e-3458.49Small protein B n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A845X7C8_9CYAN8.800e-3254.21SsrA-binding protein n=1 Tax=Spirulina sp. SIO3F2 ... [more]
A0A7S2S2L9_9STRA1.180e-3150.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7T5E3S4_9CYAN3.550e-3155.88SsrA-binding protein n=2 Tax=Cyanobacteria TaxID=1... [more]
A0A6H2NLS0_9CYAN5.030e-3152.94SsrA-binding protein n=1 Tax=Leptolyngbya sp. LCM1... [more]
K9FEP1_9CYAN8.210e-3154.90SsrA-binding protein n=8 Tax=Leptolyngbyaceae TaxI... [more]
A0A7S2S2R4_9STRA9.410e-3150.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12748contigEcto-sp13_S_contig12748:534..2169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score220.7
Seed ortholog evalue3.5e-55
Seed eggNOG ortholog2880.D8LKD0
Model size342
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.SmpB protein
EggNOG OGs2S5AD@2759,COG0691@1
Cds size342
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462682.023729-CDS-Ecto-sp13_S_contig12748:533..6231681462682.023729-CDS-Ecto-sp13_S_contig12748:533..623Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12748 534..623 -
1681462682.0329635-CDS-Ecto-sp13_S_contig12748:1114..12251681462682.0329635-CDS-Ecto-sp13_S_contig12748:1114..1225Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12748 1115..1225 -
1681462682.0408792-CDS-Ecto-sp13_S_contig12748:2028..21691681462682.0408792-CDS-Ecto-sp13_S_contig12748:2028..2169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12748 2029..2169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12748.2277.1prot_Ecto-sp13_S_contig12748.2277.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12748 534..2169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12748.2277.1

>prot_Ecto-sp13_S_contig12748.2277.1 ID=prot_Ecto-sp13_S_contig12748.2277.1|Name=mRNA_Ecto-sp13_S_contig12748.2277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
ARTSTLHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKK
GQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMT
VVPLKIFFDDNNR*
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mRNA from alignment at Ecto-sp13_S_contig12748:534..2169-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12748.2277.1 ID=mRNA_Ecto-sp13_S_contig12748.2277.1|Name=mRNA_Ecto-sp13_S_contig12748.2277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12748:534..2169- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCGAACCTCAACGCTTCACAGGAAAGCAAGGCGCAACTACGAGATACT GGAGAAGTTTGTGGCGGGGATTGAGCTTGTGGGATCGGAGGTCAAGTCTT GCCGCATGTCCAAGATCAACATGGATGAAGGCTTCGCACAAGTGGGTACA AAAATCACGGCAACGGTAGCGACCCCGAGCAACCCAAACGTTACCGAATC ACCCAGCCGTGATACACAAGGCTACAGCAGTGCCGACAAGGGTGGGTTGG GAAACATCTCGTCGAGAGTCGATGGTGTCTATCTCACCCTCTTGGTTGGA ACTTTTGGACGGAGCAATCGATCTTAAAGAAAACATCACACACCCGTACG ATCTCGCCTGCACGTCTACCTTTCTTGGTCAAGCTTCATCCTGCTTGGTT CTGTCATTGGATCGTGTTCAACACGCCGATTCGACACGTACGTCTACACG CCCACTAGCCTCTCCTTTCAGAGGCACCCGTGGGCCGGAACGCTACGTTT GTTGCCACTCAGGCTGGTCATCTTGAACGGCCAGCCAGCTAGCGCGGGTG GTGCTAGTTGTCGCAGCCAATAAGCACACATTGCTATTGACCCCTTTGAG ACTACTCGAGTGAAGCTGCTGCATGTGGCTCCACGTGCATCCCCCTAAGA ACCTATGTTGGCTGCTCGAGTGAAGCTGTAGCTCCACACGCATGCACCCC ACTCAGAGGCCTGAAAGGGATATTGTAGCAATGAGTATGTTTGGCGCAGA CGCTTTGTCGCAAGCAGCAGAGTGTGGATGTCTTCCACCAATTTTGATGG AAATGACACCGGCATGAACACCCATCCCCTCTTACTTGGCTTCACTGAAT CACAAACGTCCCTTCCTAAAGTCTGAAGGCTAAATCCATGCCTCTACTGT TACCTTCCCTGCTGTTTCCGTATGGAACTTGTCTACCTTCCAAGGCTAAG AAGGGGCAGTGCTTCTTGCATGGAATTCACATCGCTGAGTGCGGCGTGTC CAACCGCTTCTACCAGCACGAGCCCCGGAGACCGAGACGACTCCTCCTGC ACAAGGTGAGATGAACACAGCAGTCAGGAGAATTCCAAGAAAAAATCACA TCATCTAGAGATTTATCAGGAAAAAATCTCTACATCATTAGCATGGTCTT TTTTATCGACTTGTTGACCTTCTCTCAAGAGTGTTATGACTCTAAAAGCA TTGTTCAAGATAATTCTTAGGTCGCTATCTACTCTCTATGAAGCACAACA CTGTCCATGGGGTTGCCTGTGCTGCCTTCGTCATTATATTCGAAGATTTC TTCACTCCTGATTGGTCAGTTGGCTTCCGGTGTTATTACGTTACTTTTTT TACGAGACTCTGGTCTTGCACACAACCTCCAACTAAGAGATGACCTCGAG CTTACCCTTGACTACGGAGCGCTCTAGGGTTAAAGGTGGCCTTGCTCCCA CGGGACCGTCAGCGCTTGGCCCTTCACTTCCGGTCCTTTTTTTTCGTTCG CCGTCACGATGTTTGTATTTTGGCTTTCGATCTATCGGAATCTCAGCGTG AGATTAAGAAGCTCGAAGACAAGGTGGCGCAGAAGGGCATGACCGTCGTT CCTCTCAAGATCTTCTTCGACGATAACAACAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12748:534..2169-

>mRNA_Ecto-sp13_S_contig12748.2277.1 ID=mRNA_Ecto-sp13_S_contig12748.2277.1|Name=mRNA_Ecto-sp13_S_contig12748.2277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12748:534..2169- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCGAACCTCAACGCTTCACAGGAAAGCAAGGCGCAACTACGAGATACT
GGAGAAGTTTGTGGCGGGGATTGAGCTTGTGGGATCGGAGGTCAAGTCTT
GCCGCATGTCCAAGATCAACATGGATGAAGGCTTCGCACAAGCTAAGAAG
GGGCAGTGCTTCTTGCATGGAATTCACATCGCTGAGTGCGGCGTGTCCAA
CCGCTTCTACCAGCACGAGCCCCGGAGACCGAGACGACTCCTCCTGCACA
AGCGTGAGATTAAGAAGCTCGAAGACAAGGTGGCGCAGAAGGGCATGACC
GTCGTTCCTCTCAAGATCTTCTTCGACGATAACAACAGGTGA
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