mRNA_Ecto-sp13_S_contig12740.2272.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12740.2272.1
Unique NamemRNA_Ecto-sp13_S_contig12740.2272.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12740.2272.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE)

HSP 1 Score: 344 bits (882), Expect = 3.770e-106
Identity = 180/186 (96.77%), Postives = 184/186 (98.92%), Query Frame = 1 
Query:    1 KVLANLVGPRNVRPLTEARRAYVKAHPRPELPPPPSQEQLLLDRQLMEMYNVISQKRVEREENDPRWESGRVKPDDGMRDLGELFEEAPSEDSYPEYHAKVKNIMDLNTIKTKVLDREYTSVEGLLSDVALMYSNAQVIRHEQATKDGKQLLDLAQTTVERLRRERKEGTPRKDRLREQQSASGSE 558
            KVLANLVGPRNVRPLTEARRAYVKAHPRPELPPPPSQEQLLLDRQLMEMYNVISQKRVEREENDPRWESGRVKPDDGMRDLGELFEEAPSEDSYPEYHAKVKNIMDLNTI+TKVLDREY+SVEGLLSDVALMYSNAQVIRHEQATKDGKQLL LAQ TVERLRRER+EGTPRKDRLR+QQSASGSE
Sbjct: 2091 KVLANLVGPRNVRPLTEARRAYVKAHPRPELPPPPSQEQLLLDRQLMEMYNVISQKRVEREENDPRWESGRVKPDDGMRDLGELFEEAPSEDSYPEYHAKVKNIMDLNTIRTKVLDREYSSVEGLLSDVALMYSNAQVIRHEQATKDGKQLLALAQATVERLRRERQEGTPRKDRLRQQQSASGSE 2276
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BLAST of mRNA_Ecto-sp13_S_contig12740.2272.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 6.130e-73
Identity = 128/135 (94.81%), Postives = 133/135 (98.52%), Query Frame = 1 
Query:  172 VEREENDPRWESGRVKPDDGMRDLGELFEEAPSEDSYPEYHAKVKNIMDLNTIKTKVLDREYTSVEGLLSDVALMYSNAQVIRHEQATKDGKQLLDLAQTTVERLRRERKEGTPRKDRLREQQSASGSEVSPLRR 576
            VEREENDPRWESGRVKPDDGMRDLGELFEEAPSEDSYPEYHAKVKNIMDLNT++TKVLDREY+SVEGLLSDVALMYSNAQVIRHEQATKDGKQLLDLAQTTVERLRRERKEGTPRKDRLR+QQSASGSE + LRR
Sbjct: 1694 VEREENDPRWESGRVKPDDGMRDLGELFEEAPSEDSYPEYHAKVKNIMDLNTVRTKVLDREYSSVEGLLSDVALMYSNAQVIRHEQATKDGKQLLDLAQTTVERLRRERKEGTPRKDRLRQQQSASGSECTKLRR 1828
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BLAST of mRNA_Ecto-sp13_S_contig12740.2272.1 vs. uniprot
Match: A0A1S3IY77_LINUN (protein polybromo-1-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IY77_LINUN)

HSP 1 Score: 60.8 bits (146), Expect = 1.990e-7
Identity = 26/64 (40.62%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:  235 RDLGELFEEAPSEDSYPEYHAKVKNIMDLNTIKTKVLDREYTSVEGLLSDVALMYSNAQVIRHE 426
            R L ++F E PS+  YP+Y+  +   +D+NTIKTK+++ +YT+ + L++D+ LM+SNA+    E
Sbjct:  262 RSLIDIFIELPSKKEYPDYYQVISEPIDMNTIKTKIMEEKYTTEQALIADLKLMFSNARHYNEE 325
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BLAST of mRNA_Ecto-sp13_S_contig12740.2272.1 vs. uniprot
Match: A0A1S3KHJ7_LINUN (protein polybromo-1 isoform X1 n=6 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KHJ7_LINUN)

HSP 1 Score: 60.8 bits (146), Expect = 2.050e-7
Identity = 26/64 (40.62%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:  235 RDLGELFEEAPSEDSYPEYHAKVKNIMDLNTIKTKVLDREYTSVEGLLSDVALMYSNAQVIRHE 426
            R L ++F E PS+  YP+Y+  +   +D+NTIKTK+++ +YT+ + L++D+ LM+SNA+    E
Sbjct:  657 RSLIDIFIELPSKKEYPDYYQVISEPIDMNTIKTKIMEEKYTTEQALIADLKLMFSNARHYNEE 720
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12740.2272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5LHH7_9PHAE3.770e-10696.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV42_ECTSI6.130e-7394.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1S3IY77_LINUN1.990e-740.63protein polybromo-1-like n=1 Tax=Lingula unguis Ta... [more]
A0A1S3KHJ7_LINUN2.050e-740.63protein polybromo-1 isoform X1 n=6 Tax=Lingula ung... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12740contigEcto-sp13_S_contig12740:1787..4605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score250.8
Seed ortholog evalue5.3e-64
Seed eggNOG ortholog2880.D7FV42
Preferred namePHF14
Model size579
KEGG koko:K02606,ko:K11380,ko:K22156,ko:K22184
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0007154,GO:0007267,GO:0007275,GO:0008150,GO:0008285,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010464,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010640,GO:0010642,GO:0010646,GO:0010648,GO:0019219,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030323,GO:0030324,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0035295,GO:0042127,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045165,GO:0045168,GO:0045892,GO:0045934,GO:0046331,GO:0048286,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0060255,GO:0060541,GO:0065007,GO:0072201,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000026,GO:2000112,GO:2000113,GO:2000583,GO:2000584,GO:2000790,GO:2000791,GO:2001141
Exons4
EggNOG free text desc.negative regulation of platelet-derived growth factor receptor-alpha signaling pathway
EggNOG OGsCOG5141@1,KOG0954@2759,KOG0955@2759,KOG0957@2759
Cds size579
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462681.709453-CDS-Ecto-sp13_S_contig12740:1786..19561681462681.709453-CDS-Ecto-sp13_S_contig12740:1786..1956Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12740 1787..1956 +
1681462681.7216275-CDS-Ecto-sp13_S_contig12740:2596..27651681462681.7216275-CDS-Ecto-sp13_S_contig12740:2596..2765Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12740 2597..2765 +
1681462681.7326634-CDS-Ecto-sp13_S_contig12740:3442..35321681462681.7326634-CDS-Ecto-sp13_S_contig12740:3442..3532Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12740 3443..3532 +
1681462681.7487974-CDS-Ecto-sp13_S_contig12740:4455..46051681462681.7487974-CDS-Ecto-sp13_S_contig12740:4455..4605Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12740 4456..4605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12740.2272.1prot_Ecto-sp13_S_contig12740.2272.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12740 1787..4605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12740.2272.1

>prot_Ecto-sp13_S_contig12740.2272.1 ID=prot_Ecto-sp13_S_contig12740.2272.1|Name=mRNA_Ecto-sp13_S_contig12740.2272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp
KVLANLVGPRNVRPLTEARRAYVKAHPRPELPPPPSQEQLLLDRQLMEMY
NVISQKRVEREENDPRWESGRVKPDDGMRDLGELFEEAPSEDSYPEYHAK
VKNIMDLNTIKTKVLDREYTSVEGLLSDVALMYSNAQVIRHEQATKDGKQ
LLDLAQTTVERLRRERKEGTPRKDRLREQQSASGSEVSPLRR*
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mRNA from alignment at Ecto-sp13_S_contig12740:1787..4605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12740.2272.1 ID=mRNA_Ecto-sp13_S_contig12740.2272.1|Name=mRNA_Ecto-sp13_S_contig12740.2272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2819bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12740:1787..4605+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAGTCTTGGCCAACCTGGTGGGACCGCGTAACGTCCGACCCCTCACGGA
GGCGAGAAGGGCGTACGTCAAGGCTCACCCCCGCCCGGAGCTTCCGCCCC
CCCCGTCTCAAGAGCAGCTCTTGCTAGACCGACAGCTGATGGAAATGTAC
AACGTGATCTCCCAGAAGCGGTGCGTTCTTGTTTTGGAGAGGAGATTGCC
ATTGCCTCTGCTTGGTCCTGGGTTCTTCTCATTGTTGCTTTTTTTCTTGT
ACAGCTAGTGAAGTGGCTGTTTGTCACGGACGCTCGAGCATGTATGCTGT
TCGCATGGTCCCCATCTGTAGTGGTGGGTGTTAGCAAGGCGAAGATCACG
AGGGACGTTTGATGCCAGGCAACAAGTGTCGCCGATTCAGAAGACGATTA
TGATGGTGATGACGACGATAGCATACATAGCACGGCATAACATAGCGTAG
CATTGCAGGCACAACACAAGAAAAGGACGCGGGTTTATCTCGTCTGTGAA
GATTGGGATGTGGATTGGGATGTGGATTGGGATGTAGCACCCGCACAGCA
GCCCATGCTTCCCCTCGTATCGAGGTACAGCAGACCAGGGAGAGAACGCA
CTGCAGGCATTCGACGCGGGGCTTGATGTTGTCGTTAGAACGTCCCTCAC
ACACCAGCGCTTCGAAACGCACCGCTCTCTTTCCTTTTTTTTGATTTTTT
GTCTCCATCATCGTGTTGTTTCATCACGTGCGTGCATGCCTTTCCACATT
CCTTGGTTCCTCAACCCTCGACCCAACACCTGAACTCAAACCGACGACCG
ACTCACGCAGGGTGGAGAGGGAAGAGAACGACCCTAGGTGGGAGAGCGGC
AGGGTTAAGCCGGACGACGGGATGCGAGACCTTGGCGAGCTGTTCGAGGA
GGCCCCCTCTGAGGACAGCTACCCGGAGTACCACGCCAAGGTCAAGAACA
TCATGGACCTCAACACCATTAAGACAAAGGTTTGTATGTTGAGTGTGTGT
GTGTGTGTGTTTTCTGTTCTAACACAGCGAATCCAGCTATGTAGGTGTTT
GTTTACGTGTTTGTTTGAATTTTTATCATCGGCCGCGCTACTTGCTATAA
GGCGGCTGACCGGAGAACAGTTCGGTCTGATACACAGCGGGATAATGTGA
TGCAAACATGCCTTCTACTCAAAAGAGTGCTACCGACCTGTCTCCTGTTC
GTGTGATGCTTGGCATGATTGGTGCAGCGCCCATACCGTCGACAGTCGCG
CACACCAAAGATCAGGGTCAGAAATCAAGGTGTACTGCGTACTCTTGTGG
CTCTTGGGACCCTGATCCCTGTGCCGTTGGCGTGCGTGTGTGTGTTGATG
AAAATTTCTTCAACGCCAGATTTTTTCGTAACGTCCTCTGCCGTAGCAGA
GTGCGCTTCTTTTTCTGCCCGTTCGGTTTCGCTTGCCGTTTTCTTTTCTC
TTTTTTGGTTCCTTTGTTCCTTGGCATGAGAAGCACACGCTTCTTCATTT
GAGCGCGATACATAATATATTCAGGGCACACGACACATTTATTTTTTCTC
TTGTGATCGCTCGGGTGTGTTCGTTGCATCCGTGTGGCATCTCTCGGTTT
GATGTGCATAAAACCTGAAAACAAGTCCTCTGTCCATCTGTCGCGTCCGT
GGGCAGGTCCTGGACCGGGAGTACACTTCTGTGGAAGGGCTGCTGTCCGA
CGTGGCTCTCATGTACTCTAACGCTCAGGTCATCAGACACGAACAGGTAG
GCGAGAAAAAAGGGGGAATGTTTTATGAGAACAGTAGTAAGAGAGGAGCT
TAGGGCGGGGGAGAGAGAGGGACGGGGGGGAGGGAAGAGGGCAGGCGAGA
GGTGGGGGGAGACGAGGGTGGAGGGAAAGACGCACCCACTGTTCCGGCTT
GCCCTCCTTGCTACCTTACCCCGCCGTCTCAGGGTGACGCAACACTTCTA
CCCACCTATATCGAGCAAGCCGCATCAGATTCCTATTCGAACCTACCCAT
GCGTTTCCCCTGGACGAATTCACAAACCGATGGACTCTAGATAAGGGGCG
CGGTGCGAAGCGCCACGCTCGATTTCTACCTGCTTGCTACCTAGTGGGTA
TGCCACACGAAGTTCAGGCACACACAAGTACCGTATGTGACGGGCGGGCG
AACGGTGGCACCATGTATCGCACGCACGCGCTTGCACCGTAGGCGCAAAC
GGTTGCTTGCCCAGCGAGAGGCCACTGAAGTCAGGCGGGCTTTTTTTGTT
GTTGGCAAGTTTTTTTCCTTCTTTGTCGGCGTAGTGCCATACCCGCCCGT
GTCTTGGTGGTGAGATATCGCCTTTATTTTTGGTAAGCGTTGGCGATCTC
TTGCTGCACGACACATGGTGTCCCCAAAACTCAACATTGAAGTTGAATGT
ACATGGTTCAAAGCAAAGCAAACACATGATTGCTGTCGCACATACCCCTG
AAGAGACTGGGAAACCCGGGATTTTGTGATTTGGTTGCAATGCCACCATG
TATACTTCACGTCCAACCATCTTCTTCACAAAGCAAAGCAAACACATGAT
TGCTGTCGCACATACCCCTGAAGAGACTGGGAAACCCGGGATTTTGTGAT
TTGGTTGCAATGCCACCATGTATACTTCACGTCCAACCATCTTCTTCATC
ATGTCATGATTACGCGTAGGCTACCAAGGACGGGAAGCAGCTGCTCGACC
TGGCTCAGACGACGGTCGAGCGTCTCCGAAGAGAGAGGAAGGAGGGGACG
CCTCGCAAGGACAGGCTCAGGGAGCAACAGAGCGCGTCCGGCTCTGAGGT
AAGTCCTTTGAGGAGATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12740:1787..4605+

>mRNA_Ecto-sp13_S_contig12740.2272.1 ID=mRNA_Ecto-sp13_S_contig12740.2272.1|Name=mRNA_Ecto-sp13_S_contig12740.2272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12740:1787..4605+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAGTCTTGGCCAACCTGGTGGGACCGCGTAACGTCCGACCCCTCACGGA
GGCGAGAAGGGCGTACGTCAAGGCTCACCCCCGCCCGGAGCTTCCGCCCC
CCCCGTCTCAAGAGCAGCTCTTGCTAGACCGACAGCTGATGGAAATGTAC
AACGTGATCTCCCAGAAGCGGGTGGAGAGGGAAGAGAACGACCCTAGGTG
GGAGAGCGGCAGGGTTAAGCCGGACGACGGGATGCGAGACCTTGGCGAGC
TGTTCGAGGAGGCCCCCTCTGAGGACAGCTACCCGGAGTACCACGCCAAG
GTCAAGAACATCATGGACCTCAACACCATTAAGACAAAGGTCCTGGACCG
GGAGTACACTTCTGTGGAAGGGCTGCTGTCCGACGTGGCTCTCATGTACT
CTAACGCTCAGGTCATCAGACACGAACAGGCTACCAAGGACGGGAAGCAG
CTGCTCGACCTGGCTCAGACGACGGTCGAGCGTCTCCGAAGAGAGAGGAA
GGAGGGGACGCCTCGCAAGGACAGGCTCAGGGAGCAACAGAGCGCGTCCG
GCTCTGAGGTAAGTCCTTTGAGGAGATAA
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